Commit Graph

27 Commits

Author SHA1 Message Date
f8b5d71e25 Function1: Preferentially construct from separate unit conversion arguments 2024-05-21 12:43:16 +01:00
476bb42b04 unitConversion: Unit conversions on all input parameters
The majority of input parameters now support automatic unit conversion.
Units are specified within square brackets, either before or after the
value. Primitive parameters (e.g., scalars, vectors, tensors, ...),
dimensioned types, fields, Function1-s and Function2-s all support unit
conversion in this way.

Unit conversion occurs on input only. OpenFOAM writes out all fields and
parameters in standard units. It is recommended to use '.orig' files in
the 0 directory to preserve user-readable input if those files are being
modified by pre-processing applications (e.g., setFields).

For example, to specify a volumetric flow rate inlet boundary in litres
per second [l/s], rather than metres-cubed per second [m^3/s], in 0/U:

    boundaryField
    {
        inlet
        {
            type            flowRateInletVelocity;
            volumetricFlowRate 0.1 [l/s];
            value           $internalField;
        }

        ...
    }

Or, to specify the pressure field in bar, in 0/p:

    internalField   uniform 1 [bar];

Or, to convert the parameters of an Arrhenius reaction rate from a
cm-mol-kcal unit system, in constant/chemistryProperties:

    reactions
    {
        methaneReaction
        {
            type    irreversibleArrhenius;
            reaction "CH4^0.2 + 2O2^1.3 = CO2 + 2H2O";
            A       6.7e12 [(mol/cm^3)^-0.5/s];
            beta    0;
            Ea      48.4 [kcal/mol];
        }
    }

Or, to define a time-varying outlet pressure using a CSV file in which
the pressure column is in mega-pascals [MPa], in 0/p:

    boundaryField
    {
        outlet
        {
            type            uniformFixedValue;
            value
            {
                type            table;
                format          csv;
                nHeaderLine     1;
                units           ([s] [MPa]); // <-- new units entry
                columns         (0 1);
                mergeSeparators no;
                file            "data/pressure.csv";
                outOfBounds     clamp;
                interpolationScheme linear;
            }
        }

        ...
    }

(Note also that a new 'columns' entry replaces the old 'refColumn' and
'componentColumns'. This is is considered to be more intuitive, and has
a consistent syntax with the new 'units' entry. 'columns' and
'componentColumns' have been retained for backwards compatibility and
will continue to work for the time being.)

Unit definitions can be added in the global or case controlDict files.
See UnitConversions in $WM_PROJECT_DIR/etc/controlDict for examples.
Currently available units include:

    Standard: kg m s K kmol A Cd

     Derived: Hz N Pa J W g um mm cm km l ml us ms min hr mol
              rpm bar atm kPa MPa cal kcal cSt cP % rad rot deg

A user-time unit is also provided if user-time is in operation. This
allows it to be specified locally whether a parameter relates to
real-time or to user-time. For example, to define a mass source that
ramps up from a given engine-time (in crank-angle-degrees [CAD]) over a
duration in real-time, in constant/fvModels:

    massSource1
    {
        type        massSource;
        points      ((1 2 3));
        massFlowRate
        {
            type        scale;
            scale       linearRamp;
            start       20 [CAD];
            duration    50 [ms];
            value       0.1 [g/s];
        }
    }

Specified units will be checked against the parameter's dimensions where
possible, and an error generated if they are not consistent. For the
dimensions to be available for this check, the code requires
modification, and work propagating this change across OpenFOAM is
ongoing. Unit conversions are still possible without these changes, but
the validity of such conversions will not be checked.

Units are no longer permitted in 'dimensions' entries in field files.
These 'dimensions' entries can now, instead, take the names of
dimensions. The names of the available dimensions are:

    Standard: mass length time temperature
              moles current luminousIntensity

     Derived: area volume rate velocity momentum acceleration density
              force energy power pressure kinematicPressure
              compressibility gasConstant specificHeatCapacity
              kinematicViscosity dynamicViscosity thermalConductivity
              volumetricFlux massFlux

So, for example, a 0/epsilon file might specify the dimensions as
follows:

    dimensions      [energy/mass/time];

And a 0/alphat file might have:

    dimensions      [thermalConductivity/specificHeatCapacity];

*** Development Notes ***

A unit conversion can construct trivially from a dimension set,
resulting in a "standard" unit with a conversion factor of one. This
means the functions which perform unit conversion on read can be
provided dimension sets or unit conversion objects interchangeably.

A basic `dict.lookup<vector>("Umean")` call will do unit conversion, but
it does not know the parameter's dimensions, so it cannot check the
validity of the supplied units. A corresponding lookup function has been
added in which the dimensions or units can be provided; in this case the
corresponding call would be `dict.lookup<vector>("Umean", dimVelocity)`.
This function enables additional checking and should be used wherever
possible.

Function1-s and Function2-s have had their constructors and selectors
changed so that dimensions/units must be specified by calling code. In
the case of Function1, two unit arguments must be given; one for the
x-axis and one for the value-axis. For Function2-s, three must be
provided.

In some cases, it is desirable (or at least established practice), that
a given non-standard unit be used in the absence of specific
user-defined units. Commonly this includes reading angles in degrees
(rather than radians) and reading times in user-time (rather than
real-time). The primitive lookup functions and Function1 and Function2
selectors both support specifying a non-standard default unit. For
example, `theta_ = dict.lookup<scalar>("theta", unitDegrees)` will read
an angle in degrees by default. If this is done within a model which
also supports writing then the write call must be modified accordingly
so that the data is also written out in degrees. Overloads of writeEntry
have been created for this purpose. In this case, the angle theta should
be written out with `writeEntry(os, "theta", unitDegrees, theta_)`.
Function1-s and Function2-s behave similarly, but with greater numbers
of dimensions/units arguments as before.

The non-standard user-time unit can be accessed by a `userUnits()`
method that has been added to Time. Use of this user-time unit in the
construction of Function1-s should prevent the need for explicit
user-time conversion in boundary conditions and sub-models and similar.

Some models might contain non-typed stream-based lookups of the form
`dict.lookup("p0") >> p0_` (e.g., in a re-read method), or
`Umean_(dict.lookup("Umean"))` (e.g., in an initialiser list). These
calls cannot facilitate unit conversion and are therefore discouraged.
They should be replaced with
`p0_ = dict.lookup<scalar>("p0", dimPressure)` and
`Umean_(dict.lookup<vector>("Umean", dimVelocity))` and similar whenever
they are found.
2024-05-16 09:01:46 +01:00
04dd989911 Time: Removed graphFormat
setFormat no longer defaults to the value of graphFormat optionally set in
controlDict and must be set in the functionObject dictionary.

boundaryFoam, financialFoam and pdfPlot still require a graphFormat entry in
controlDict but this is now read directly rather than by Time.
2023-06-16 14:51:30 +01:00
618d9d33b2 controlDict: the optional graphFormat entry is now used as the default for all setFormat entries
Foam::graph superseded by the more general Foam::setWriter reducing code
maintenance overhead, simplifying usage and further development.
2023-06-12 17:14:37 +01:00
c63c1a90c2 systemDict: Consistent handling of the -dict option
The -dict option is now handled correctly and consistently across all
applications with -dict options. The logic associated with doing so has
been centralised.

If a relative path is given to the -dict option, then it is assumed to
be relative to the case directory. If an absolute path is given, then it
is used without reference to the case directory. In both cases, if the
path is found to be a directory, then the standard dictionary name is
appended to the path.

Resolves bug report http://bugs.openfoam.org/view.php?id=3692
2021-07-02 15:11:06 +01:00
4e183e33d4 Function1::Table: simplified and rationalised
TableBase, TableFile and Table now combined into a single simpler Table class
which handle both the reading of embedded and file data using the generalised
TableReader.  The new EmbeddedTableReader handles the embedded data reading
providing the functionality of the original Table class within the same
structure that can read the data from separate files.

The input format defaults to 'embedded' unless the 'file' entry is present and
the Table class is added to the run-time selection table under the name 'table'
and 'tableFile' which provides complete backward comparability.  However it is
advisable to migrate cases to use the new 'table' entry and all tutorial cases
have been updated.
2020-11-16 23:48:47 +00:00
37ebdfe36e Function1::TableReader: Added EmbeddedTableReader so that TableFile can read embedded table data 2020-11-16 21:01:41 +00:00
c1820f19d3 postProcessing::noise: Improved robustness of the uniform time-step check 2019-10-31 14:48:31 +00:00
7ab73932cf Function1: Generalisation and removal of unused code
Function1 has been generalised in order to provide functionality
previously provided by some near-duplicate pieces of code.

The interpolationTable and tableReader classes have been removed and
their usage cases replaced by Function1. The interfaces to Function1,
Table and TableFile has been improved for the purpose of using it
internally; i.e., without user input.

Some boundary conditions, fvOptions and function objects which
previously used interpolationTable or other low-level interpolation
classes directly have been changed to use Function1 instead. These
changes may not be backwards compatible. See header documentation for
details.

In addition, the timeVaryingUniformFixedValue boundary condition has
been removed as its functionality is duplicated entirely by
uniformFixedValuePointPatchField.
2019-10-23 13:13:53 +01:00
bf54ab67e1 Updated OpenFOAM Foundation web-link in headers 2018-07-06 21:42:54 +01:00
567fc90492 Corrected "fileName" -> "file" in header documentation
Patch contributed by Bruno Santos
Resolves bug-report https://bugs.openfoam.org/view.php?id=2951
2018-05-22 22:30:46 +01:00
fc2b2d0c05 OpenFOAM: Rationalized the naming of scalar limits
In early versions of OpenFOAM the scalar limits were simple macro replacements and the
names were capitalized to indicate this.  The scalar limits are now static
constants which is a huge improvement on the use of macros and for consistency
the names have been changed to camel-case to indicate this and improve
readability of the code:

    GREAT -> great
    ROOTGREAT -> rootGreat
    VGREAT -> vGreat
    ROOTVGREAT -> rootVGreat
    SMALL -> small
    ROOTSMALL -> rootSmall
    VSMALL -> vSmall
    ROOTVSMALL -> rootVSmall

The original capitalized are still currently supported but their use is
deprecated.
2018-01-25 09:46:37 +00:00
c88507b3eb Function1: Optimized field evaluations 2017-08-08 10:16:08 +01:00
7c301dbff4 Parallel IO: New collated file format
When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor.  Processor directories are named 'processorN',
where N is the processor number.

This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor.  The files are stored in a single
directory named 'processors'.

The new format produces significantly fewer files - one per field, instead of N
per field.  For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.

The file writing can be threaded allowing the simulation to continue running
while the data is being written to file.  NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".

The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:

OptimisationSwitches
{
    ...

    //- Parallel IO file handler
    //  uncollated (default), collated or masterUncollated
    fileHandler uncollated;

    //- collated: thread buffer size for queued file writes.
    //  If set to 0 or not sufficient for the file size threading is not used.
    //  Default: 2e9
    maxThreadFileBufferSize 2e9;

    //- masterUncollated: non-blocking buffer size.
    //  If the file exceeds this buffer size scheduled transfer is used.
    //  Default: 2e9
    maxMasterFileBufferSize 2e9;
}

When using the collated file handling, memory is allocated for the data in the
thread.  maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated.  If the data exceeds this size, the write does not use threading.

When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer.  If the
data exceeds this size, the system uses scheduled communication.

The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters.  Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.

A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
    mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated

An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling

The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
2017-07-07 11:39:56 +01:00
b14e2af2d4 postProcessing/noise: Updated for changes to Function1 2017-03-16 20:56:09 +00:00
01c758b79a Function1: Rationalized construction to support the simpler sub-dictionary format
e.g.
    ramp
    {
        type     quadratic;
        start    200;
        duration 1.6;
    }

but the old format is supported for backward compatibility:

    ramp linear;
    rampCoeffs
    {
        start    200;
        duration 1.6;
    }
2017-03-16 20:53:08 +00:00
4a301e94c6 functionObjects: Separated writeFile and logFiles (previously writeFiles) from regionFunctionObject
Now the functionality to write single graph files or log files (vs time)
may be used in the creation of any form of functionObject, not just
those relating to a mesh region.
2016-08-07 15:23:55 +01:00
8a5304edf6 Doxygen documentation: Standardized the 'See also' heading 2016-06-17 17:31:34 +01:00
2ca0a6f362 Doxygen documentation: Use the standard 'Usage' rather than the '\heading....' 2016-06-17 17:22:24 +01:00
91aba2db2e functionObjects: rewritten to all be derived from 'functionObject'
- Avoids the need for the 'OutputFilterFunctionObject' wrapper
  - Time-control for execution and writing is now provided by the
    'timeControlFunctionObject' which instantiates the processing
    'functionObject' and controls its operation.
  - Alternative time-control functionObjects can now be written and
    selected at run-time without the need to compile wrapped version of
    EVERY existing functionObject which would have been required in the
    old structure.
  - The separation of 'execute' and 'write' functions is now formalized in the
    'functionObject' base-class and all derived classes implement the
    two functions.
  - Unnecessary implementations of functions with appropriate defaults
    in the 'functionObject' base-class have been removed reducing
    clutter and simplifying implementation of new functionObjects.
  - The 'coded' 'functionObject' has also been updated, simplified and tested.
  - Further simplification is now possible by creating some general
    intermediate classes derived from 'functionObject'.
2016-05-15 16:40:01 +01:00
7155ef61ae functionObjectFile: Separated into functionObjectFile and functionObjectFiles
functionObjectFile provides basic directory, file and formatting functions
functionObjectFiles provides multi-file cache
2016-04-30 09:18:42 +01:00
0b4643922a Rename DataEntry -> Function1
Function1 is an abstract base-class of run-time selectable unary
functions which may be composed of other Function1's allowing the user
to specify complex functions of a single scalar variable, e.g. time.
The implementations need not be a simple or continuous functions;
interpolated tables and polynomials are also supported.  In fact form of
mapping between a single scalar input and a single primitive type output
is supportable.

The primary application of Function1 is in time-varying boundary
conditions, it also used for other functions of time, e.g. injected mass
is spray simulations but is not limited to functions of time.
2016-02-08 16:18:07 +00:00
5b790aa60b Updated header 2016-02-07 13:34:03 +00:00
a162a26de6 DataEntry: Created the DataEntryTypes namespace for all the concrete DataEntry types
to avoid name conflicts with these primitive names in the OpenFOAM namespace
2016-02-07 13:32:38 +00:00
10aea96ae5 applications: Update ...ErrorIn -> ...ErrorInFunction
Avoids the clutter and maintenance effort associated with providing the
function signature string.
2015-11-10 17:53:31 +00:00
2828d82cba utilities/postProcessing/noise: Corrected documentation
Patches provided by Bruno Santos
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1832
2015-08-19 11:37:27 +01:00
446e5777f0 Add the OpenFOAM source tree 2014-12-10 22:40:10 +00:00