All function objects now re-read as a result of run-time modifications
to the system/controlDict.
Function objects that write log files (via the logFiles class) will now
generate a new postProcessing/<funcName>/<time> directory as a result of
either restart or run-time modification. Log files will therefore never
be overwritten by restart or run-time modification, except for when a
case is restarted at the same time as a previous execution (e.g.,
repeated runs at the start time).
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