Scripts in bin: removed redundant job management scripts
This commit is contained in:
Chris Greenshields
@ -1,396 +0,0 @@
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#!/bin/sh
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#------------------------------------------------------------------------------
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# ========= |
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# \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
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# \\ / O peration |
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# \\ / A nd | Copyright (C) 2011 OpenFOAM Foundation
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# \\/ M anipulation |
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#-------------------------------------------------------------------------------
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# License
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# This file is part of OpenFOAM.
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#
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# OpenFOAM is free software: you can redistribute it and/or modify it
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# under the terms of the GNU General Public License as published by
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# the Free Software Foundation, either version 3 of the License, or
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# (at your option) any later version.
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#
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# OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
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# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
|
||||
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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# for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
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#
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# Script
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# foamCheckJobs
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#
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# Description
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# Uses runningJobs/, finishedJobs/ and foamProcessInfo to create stateFile.
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# stateFile contains per pid information on state of process. Format:
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# pid state command
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#
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# where state is one of 'RUNN', 'SUSP', 'OTHR', 'FINI', 'ABRT' ('PEND')
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# (first three are from foamProcessInfo, others from jobInfo files)
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# (PEND is special state from when user has submitted but no jobInfo
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# file yet. Not supported by this script yet)
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#
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#------------------------------------------------------------------------------
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Script=${0##*/}
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#-------------------------------------------------------------------------------
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#- User settings
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#- Number of days for files to be considered old
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NDAYSLIMIT=7
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#-------------------------------------------------------------------------------
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#- work file
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TMPFILE=/tmp/${Script}$$.tmp
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#- work dir. Needs to be accessible for all machines
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MACHDIR=$HOME/.OpenFOAM/${Script}
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DEFSTATEFILE=$HOME/.OpenFOAM/foamCheckJobs.out
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if [ `uname -s` = Linux ]
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then
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ECHO='echo -e'
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else
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ECHO='echo'
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fi
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usage() {
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cat<<USAGE
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Usage: $Script [stateFile]
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This program checks all the locks in the FOAM_JOB_DIR directory to see if
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their processes are still running. Processes will not release their
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lock if they exit abnormally. This program will try to obtain process
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information on the machine the process ran on and release the lock
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if the program is no longer running.
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Note: all machines have to be reachable using ssh.
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The output from checking all running jobs is collected in an optional
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file.
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FILES:
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\$FOAM_JOB_DIR/runningJobs locks for running processes
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/finishedJobs locks for finished processes
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USAGE
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exit 1
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}
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#-------------------------------------------------------------------------------
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#
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# Functions
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#
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#-------------------------------------------------------------------------------
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# getRawEntry dictionary entry
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# Prints value of dictionary entry
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getRawEntry() {
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grep -v '^//' $1 | grep "^[ \t]*$2 " | sed -e "s/^[ \t]*$2 [ ]*//"
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}
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# getEntry dictionary entry
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# Like getRawEntry but strips " and ending ';'
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getEntry() {
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getRawEntry $1 $2 | sed -e 's/^"//' -e 's/;$//' -e 's/"$//'
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}
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# notEmpty directory
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# Returns 0 if directory contains files/directories
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notEmpty() {
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if [ "`ls $1`" ]
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then
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return 0
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else
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return 1
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fi
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}
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# dayDiff <date string 1> <date string 2>
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# Prints number of days between the two
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# Eg. dayDiff "Jan 10 2002" "Dec 28 1999"
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# ==> 13
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dayDiff() {
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date -d "$1" > /dev/null 2>&1
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if [ $? -ne 0 ]
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then
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#- option '-d' on date not supported. Give up.
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echo "0"
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else
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year1=`echo "$1" | awk '{print $3}'`
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year2=`echo "$2" | awk '{print $3}'`
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day1=`date -d "$1" "+%j"`
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day2=`date -d "$2" "+%j"`
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nYears=`expr $year1 - $year2`
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tmp1=`expr $nYears \* 365`
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tmp2=`expr $day1 - $day2`
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expr $tmp1 + $tmp2
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fi
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}
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#dayDiff "`date '+%b %d %Y'`" "Dec 28 2001"
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# getAllJobs jobInfoDirectory
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# Prints list of all jobs in directory (e.g. runningJobs/)
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# Also handles 'slaves' entries in jobInfo:
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# slaves 1 ( penfold.23766 );
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getAllJobs() {
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if notEmpty $1
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then
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jobs=$1/*
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for f in $jobs
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do
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line=`grep '^[ ]*slaves' $f 2>/dev/null`
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if [ $? -eq 0 ]
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then
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slaveJobs=`echo "$line" | sed -e 's/.*(\(.*\)).*/\1/'`
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jobs="$jobs $slaveJobs"
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fi
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done
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else
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jobs=''
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fi
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echo "$jobs"
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}
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# releaseLock jobId lockFile
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# Releases lock on jobId
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releaseLock () {
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if [ -f $2 ]
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then
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#- move lock to finishedJobs
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mv $2 $FOAM_JOB_DIR/finishedJobs/
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fi
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echo "Lock on job $1 released."
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}
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#-------------------------------------------------------------------------------
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#
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# Main
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#
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#-------------------------------------------------------------------------------
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if [ $# -eq 1 ]
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then
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if [ "$1" = "-h" -o "$1" = "-help" ]
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then
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usage
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fi
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STATEFILE="$1"
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elif [ $# -eq 0 ]
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then
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STATEFILE=${STATEFILE:-$DEFSTATEFILE}
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else
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usage
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fi
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#- Check a few things
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if [ ! "$FOAM_JOB_DIR" ]
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then
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echo "$Script : FOAM_JOB_DIR environment variable not set."
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echo
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exit 1
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fi
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if [ ! -d "$FOAM_JOB_DIR" ]
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then
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echo "$Script : directory does not exist."
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echo " FOAM_JOB_DIR=$FOAM_JOB_DIR"
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echo
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exit 1
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fi
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if [ ! -d "$FOAM_JOB_DIR/runningJobs" -o ! -d "$FOAM_JOB_DIR/finishedJobs" ]
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then
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echo "$Script : invalid directory."
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echo " FOAM_JOB_DIR=$FOAM_JOB_DIR"
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echo
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exit 1
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fi
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#- obtain rsh method
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RSH='ssh'
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echo "Using remote shell type : $RSH"
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echo ""
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echo "Collecting information on jobs in"
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echo " $FOAM_JOB_DIR"
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echo ""
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#- Collect machine names into $TMPFILE
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# Also handles 'slaves' entry in jobInfo:
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rm -f $TMPFILE; touch $TMPFILE
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RUNJOBS=`getAllJobs $FOAM_JOB_DIR/runningJobs`
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for f in $RUNJOBS
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do
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machinePid=`basename $f | sed -e 's/^"//' -e 's/"$//'`
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machine=`echo "$machinePid" | sed -e 's/\.[0-9][0-9]*$//'`
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pid=`echo "$machinePid" | sed -e 's/.*\.\([0-9][0-9]*\)$/\1/'`
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fgrep "$machine" $TMPFILE >/dev/null 2>&1
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if [ $? -ne 0 ]
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then
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echo "$machine" >> $TMPFILE
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fi
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done
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echo "Found machines:"
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cat $TMPFILE
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echo ""
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#- Collect process info on all machines, one file per machine
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mkdir -p $MACHDIR
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cnt=1
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while true
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do
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machine=`sed -n -e "${cnt}p" $TMPFILE`
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if [ ! "$machine" ]
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then
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break
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fi
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machFile=$MACHDIR/$machine
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rm -f $machFile
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echo "Contacting $machine to collect process information:"
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if [ $machine = `hostname` ]
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then
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echo " foamProcessInfo $machFile"
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foamProcessInfo $machFile >/dev/null 2>&1
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else
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echo " $RSH $machine foamProcessInfo $machFile"
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$RSH $machine foamProcessInfo $machFile >/dev/null 2>&1
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fi
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if [ $? -ne 0 -o ! -s $machFile ]
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then
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echo "** Failed collecting process information on $machine."
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echo "Check $machFile and run foamProcessInfo by hand"
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rm -f $machFile
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else
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echo "Succesfully collected information in $machFile ..."
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fi
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cnt=`expr $cnt + 1`
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done
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echo ""
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#- Construct state for runningJobs; move non runnning jobs to finishedJobs
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releaseAll=''
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rm -f $STATEFILE
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for f in $RUNJOBS
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do
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machinePid=`basename $f`
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machine=`echo $machinePid | sed -e 's/\.[0-9][0-9]*$//'`
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pid=`echo $machinePid | sed -e 's/.*\.\([0-9][0-9]*\)$/\1/'`
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machFile=$MACHDIR/$machine
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if [ -r $machFile ]
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then
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entry=`grep "^$pid " $machFile 2>/dev/null`
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if [ $? -ne 0 -o ! "$entry" ]
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then
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if [ "$releaseAll" ]
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then
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releaseLock $machinePid $f
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else
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echo "Job $machinePid seems to be no longer running. Release lock? (y/a)\c"
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read answ
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if [ "${answ:-y}" = 'y' ]
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then
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releaseLock $machinePid $f
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elif [ "${answ:-y}" = 'a' ]
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then
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releaseAll='yes'
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releaseLock $machinePid $f
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else
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state='OTHR'
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echo "$machinePid $state" >> $STATEFILE
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fi
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fi
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else
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state=`echo "$entry" | awk '{print $2}'`
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echo "$machinePid $state" >> $STATEFILE
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fi
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fi
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done
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#- Collect old jobs in finishedJobs
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OLDFILES=`find $FOAM_JOB_DIR/finishedJobs -mtime +$NDAYSLIMIT -print`
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#- Construct state for finishedJobs and check on date of files.
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if notEmpty $FOAM_JOB_DIR/finishedJobs
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then
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dateNow=`date '+%b %d %Y'`
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for f in $FOAM_JOB_DIR/finishedJobs/*
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do
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sz=`ls -s $f | awk '{print $1}'`
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if [ "$sz" -gt 0 ]
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then
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machinePid=`basename $f`
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machine=`echo $machinePid | sed -e 's/\.[0-9][0-9]*$//'`
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pid=`echo $machinePid | sed -e 's/.*\.\([0-9][0-9]*\)$/\1/'`
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end=`getEntry $f endDate`
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if [ ! "$end" ]
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then
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state='ABRT'
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else
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nDaysOld=`dayDiff "$dateNow" "$end"`
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if [ "$nDaysOld" -gt $NDAYSLIMIT ]
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then
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OLDFILES="$OLDFILES $f"
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fi
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state='FINI'
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fi
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echo "$machinePid $state" >> $STATEFILE
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fi
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done
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fi
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#- Remove old locks
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nOldFiles=`echo "$OLDFILES" | wc -w`
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if [ "$nOldFiles" -gt 0 ]
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then
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echo "You seem to have $nOldFiles locks older than $NDAYSLIMIT days in finishedJobs/"
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$ECHO "Do you want to remove these? (y)\c"
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read answ
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if [ "${answ:-y}" = 'y' ]
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then
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rm -f $OLDFILES
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fi
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fi
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rm -f $TMPFILE
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rm -r $MACHDIR
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echo ""
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echo "Updated stateFile:"
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echo " $STATEFILE"
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echo ""
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#------------------------------------------------------------------------------
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450
bin/foamEndJob
450
bin/foamEndJob
@ -1,450 +0,0 @@
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#!/bin/sh
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#------------------------------------------------------------------------------
|
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# ========= |
|
||||
# \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
|
||||
# \\ / O peration |
|
||||
# \\ / A nd | Copyright (C) 2011-2014 OpenFOAM Foundation
|
||||
# \\/ M anipulation |
|
||||
#-------------------------------------------------------------------------------
|
||||
# License
|
||||
# This file is part of OpenFOAM.
|
||||
#
|
||||
# OpenFOAM is free software: you can redistribute it and/or modify it
|
||||
# under the terms of the GNU General Public License as published by
|
||||
# the Free Software Foundation, either version 3 of the License, or
|
||||
# (at your option) any later version.
|
||||
#
|
||||
# OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
|
||||
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
|
||||
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
|
||||
# for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU General Public License
|
||||
# along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
|
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#
|
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# Script
|
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# foamEndJob
|
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#
|
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# Description
|
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# Ends running job on current machine. Called with root,case,pid.
|
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# - checks if pid exists
|
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# - modifies controlDict
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# - waits until
|
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# - pid disappeared
|
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# - controlDict modified
|
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# to restore controlDict
|
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#
|
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#-------------------------------------------------------------------------------
|
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Script=${0##*/}
|
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|
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usage() {
|
||||
exec 1>&2
|
||||
while [ "$#" -ge 1 ]; do echo "$1"; shift; done
|
||||
cat<<USAGE
|
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Usage: $Script [OPTION] <pid>
|
||||
Usage: $Script [OPTION] -c
|
||||
|
||||
options:
|
||||
-clear clear any outstanding $Script for the case
|
||||
-case <dir> specify alternative case directory, default is the cwd
|
||||
-now stop at next time step
|
||||
-help print the usage
|
||||
|
||||
Tries to end running OpenFOAM application at next write (or optionally
|
||||
at the next time step). It needs runTimeModifiable switched on in the
|
||||
controlDict. It changes stopAt in the controlDict and waits for the
|
||||
job to finish. Restores original controlDict if
|
||||
|
||||
- job has finished
|
||||
- controlDict gets modified (by user)
|
||||
- $Script gets killed.
|
||||
|
||||
The -clear option clears any outstanding $Script for the case.
|
||||
|
||||
USAGE
|
||||
exit 1
|
||||
}
|
||||
|
||||
unset clearOpt stopOpt
|
||||
|
||||
# parse options
|
||||
while [ "$#" -gt 0 ]
|
||||
do
|
||||
case "$1" in
|
||||
-h | -help)
|
||||
usage
|
||||
;;
|
||||
-case)
|
||||
[ "$#" -ge 2 ] || usage "'$1' option requires an argument"
|
||||
cd "$2" 2>/dev/null || usage "directory does not exist: '$2'"
|
||||
shift 2
|
||||
;;
|
||||
-c | -clear)
|
||||
clearOpt=true
|
||||
shift
|
||||
;;
|
||||
-n | -now)
|
||||
stopOpt=now
|
||||
shift
|
||||
;;
|
||||
-*)
|
||||
usage "unknown option: '$*'"
|
||||
;;
|
||||
*)
|
||||
break
|
||||
;;
|
||||
esac
|
||||
done
|
||||
|
||||
|
||||
# parent directory for normal or parallel
|
||||
case "$PWD" in
|
||||
processor*) caseDir=".." ;;
|
||||
*) caseDir="." ;;
|
||||
esac
|
||||
|
||||
# check that case directory is writeable
|
||||
[ -w $caseDir ] || {
|
||||
echo "$Script : $caseDir is not writeable"
|
||||
exit 1
|
||||
}
|
||||
|
||||
# check that controlDict is writeable
|
||||
controlDict=$caseDir/system/controlDict
|
||||
[ -w $controlDict ] || {
|
||||
echo "$Script : $controlDict is not writeable"
|
||||
exit 1
|
||||
}
|
||||
|
||||
# need a pid unless with the -clear option
|
||||
if [ "$clearOpt" = true ]
|
||||
then
|
||||
[ $# -eq 0 ] || usage
|
||||
else
|
||||
[ $# -eq 1 ] || usage
|
||||
PID=$1
|
||||
fi
|
||||
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
#
|
||||
# Functions
|
||||
#
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
# getNumberedLine dictionary entry
|
||||
# Prints dictionary entry line + lineno
|
||||
getNumberedLine() {
|
||||
grep -n "^[ \t]*$2[ \t]" $1 | grep -v '^//' | head -1
|
||||
}
|
||||
|
||||
# getLine dictionary entry
|
||||
# Prints dictionary entry line (without lineno)
|
||||
getLine() {
|
||||
getNumberedLine $1 "$2" | sed -e 's/^[^:]*://'
|
||||
}
|
||||
|
||||
# getRawEntry dictionary entry
|
||||
# Prints value of dictionary entry
|
||||
getRawEntry() {
|
||||
getLine $1 "$2" | sed -e "s/^[ \t]*$2[ \t][ \t]*//"
|
||||
}
|
||||
|
||||
# getEntry dictionary entry
|
||||
# Like getRawEntry but strips " and ending ';'
|
||||
getEntry() {
|
||||
getRawEntry $1 "$2" | sed -e 's/^"//' -e 's/;$//' -e 's/"$//'
|
||||
}
|
||||
|
||||
# getKey entryLine
|
||||
# Prints first item on line
|
||||
getKey() {
|
||||
echo "$1" | sed -e 's/[ \t]*\(.*\)[ \t].*/\1/'
|
||||
}
|
||||
|
||||
|
||||
# setRawEntry dictionary entry newValue
|
||||
# Replaces value of entry
|
||||
setRawEntry() {
|
||||
oldNumLine=`getNumberedLine $1 "$2"`
|
||||
lineNo=`echo "$oldNumLine" | sed -e 's/:.*//'`
|
||||
oldLine=`echo "$oldNumLine" | sed -e 's/^[^:]*://'`
|
||||
oldKey=`getKey "$oldLine"`
|
||||
oldVal=`getRawEntry $1 "$2"`
|
||||
|
||||
if [ ! "$oldKey" -o ! "$oldVal" -o ! "$oldLine" ]
|
||||
then
|
||||
echo "setRawStringEntry: entry $2 not found in $1"
|
||||
echo "oldKey=$oldKey"
|
||||
echo "lineNo=$lineNo"
|
||||
echo "oldLine=$oldLine"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
#echo "oldKey=$oldKey"
|
||||
#echo "lineNo=$lineNo"
|
||||
#echo "oldLine=$oldLine"
|
||||
#echo "oldVal=$oldVal"
|
||||
mv $1 ${1}_tmp
|
||||
sed -e "${lineNo}s/ ${oldVal}/ $3;/" ${1}_tmp > $1
|
||||
rm -f ${1}_tmp
|
||||
}
|
||||
|
||||
|
||||
|
||||
# like getEntry but returns true if boolean is logical true
|
||||
getBoolEntry()
|
||||
{
|
||||
val=`getEntry $1 $2`
|
||||
case "$val" in
|
||||
y | yes | true | on | 1)
|
||||
return 0
|
||||
;;
|
||||
n | no | false | off | 0)
|
||||
return 123
|
||||
;;
|
||||
*)
|
||||
echo "$Script : getBoolEntry : Illegal boolean value $val in dictionary $1"
|
||||
exit 1
|
||||
;;
|
||||
esac
|
||||
}
|
||||
|
||||
# processExists pid
|
||||
# Returns true if pid exists.
|
||||
processExists() {
|
||||
ps -u $LOGNAME -o pid | fgrep $1 >/dev/null
|
||||
}
|
||||
|
||||
# Restore controlDict and clean up
|
||||
restoreDict() {
|
||||
trap QUIT TERM INT
|
||||
|
||||
echo "$Script : Restoring controlDict from controlDict_bak"
|
||||
if [ -r ${controlDict}_bak ]
|
||||
then
|
||||
cp ${controlDict}_bak $controlDict
|
||||
fi
|
||||
|
||||
rm -f $pidFile
|
||||
|
||||
echo "$Script : Exiting"
|
||||
exit 0
|
||||
}
|
||||
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
#
|
||||
# Main
|
||||
#
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
#-- Force standards behaving ps
|
||||
# Get info on all $USER processes
|
||||
case `uname -s` in
|
||||
HP-UX*)
|
||||
UNIX95=a
|
||||
export UNIX95
|
||||
;;
|
||||
IRIX*)
|
||||
_XPG=1
|
||||
export _XPG
|
||||
;;
|
||||
esac
|
||||
|
||||
|
||||
# Pid actually running
|
||||
if [ "$clearOpt" != true ]
|
||||
then
|
||||
processExists $PID
|
||||
if [ $? -ne 0 ]
|
||||
then
|
||||
echo "$Script : process $PID not running"
|
||||
exit 1
|
||||
fi
|
||||
fi
|
||||
|
||||
#- runTimeModifiable
|
||||
getBoolEntry $controlDict runTimeModifiable || {
|
||||
echo "$Script : runTimeModifiable not true in dictionary $controlDict"
|
||||
exit 1
|
||||
}
|
||||
|
||||
#
|
||||
#- Check if another foamEndJob running
|
||||
#
|
||||
if [ "$clear" = true ]
|
||||
then
|
||||
pidFiles=`ls $caseDir/.foamEndJob* 2>/dev/null`
|
||||
for pidFile in $pidFiles
|
||||
do
|
||||
pid=`cat $pidFile`
|
||||
if [ "$pid" ]
|
||||
then
|
||||
echo "$Script : found $Script (pid $pid) for OpenFOAM process"
|
||||
echo " case: $PWD/$caseDir"
|
||||
echo "$Script : Killing $Script (pid $pid)"
|
||||
kill $pid
|
||||
rm -f $pidFile
|
||||
fi
|
||||
done
|
||||
exit 0
|
||||
fi
|
||||
|
||||
pidFile=$caseDir/.foamEndJob$PID
|
||||
if [ -f $pidFile ]
|
||||
then
|
||||
pid=`cat $pidFile`
|
||||
if [ "$pid" ]
|
||||
then
|
||||
processExists $pid
|
||||
if [ $? -eq 0 ]
|
||||
then
|
||||
echo "$Script : found running $Script (pid $pid) for OpenFOAM process"
|
||||
echo " case: $PWD/$caseDir"
|
||||
echo " pid : $PID"
|
||||
echo " lock: $pidFile"
|
||||
echo "Remove the lock if this is not the case"
|
||||
exit 1
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
|
||||
# Mark with my pid
|
||||
echo $$ > $pidFile
|
||||
|
||||
#
|
||||
#- Get controlDict entries
|
||||
#
|
||||
|
||||
|
||||
#- startTime
|
||||
startTime=`getEntry $controlDict startTime`
|
||||
[ "$startTime" ] || {
|
||||
echo "$Script : startTime not set in dictionary $controlDict"
|
||||
exit 1
|
||||
}
|
||||
|
||||
#- Write interval
|
||||
writeInterval=`getEntry $controlDict writeInterval`
|
||||
[ "$writeInterval" ] || {
|
||||
echo "$Script : writeInterval not set in dictionary $controlDict"
|
||||
exit 1
|
||||
}
|
||||
|
||||
#- stopAt
|
||||
stopAt=`getEntry $controlDict stopAt`
|
||||
[ "$stopAt" ] || {
|
||||
echo "$Script : stopAt not set in dictionary $controlDict"
|
||||
exit 1
|
||||
}
|
||||
|
||||
#- endTime
|
||||
endTime=`getEntry $controlDict endTime`
|
||||
[ "$endTime" ] || {
|
||||
echo "$Script : endTime not set in dictionary $controlDict"
|
||||
exit 1
|
||||
}
|
||||
|
||||
|
||||
echo "$Script : Read from controlDict:"
|
||||
echo " controlDict : $controlDict"
|
||||
echo " writeInterval : $writeInterval"
|
||||
#echo " startTime : $startTime"
|
||||
echo " stopAt : $stopAt"
|
||||
#echo " endTime : $endTime"
|
||||
|
||||
echo "$Script : Making backup of controlDict to controlDict_bak"
|
||||
cp $controlDict ${controlDict}_bak
|
||||
|
||||
#- Set up handler to restore controlDict
|
||||
trap restoreDict QUIT TERM INT
|
||||
|
||||
if [ "$stopOpt" = now ]
|
||||
then
|
||||
setRawEntry $controlDict stopAt nextWrite
|
||||
setRawEntry $controlDict writeControl timeStep
|
||||
setRawEntry $controlDict writeInterval 1
|
||||
|
||||
echo "$Script : Changed in controlDict:"
|
||||
echo " `getLine $controlDict stopAt`"
|
||||
echo " `getLine $controlDict writeControl`"
|
||||
echo " `getLine $controlDict writeInterval`"
|
||||
else
|
||||
setRawEntry $controlDict stopAt nextWrite
|
||||
|
||||
echo "$Script : Changed in controlDict:"
|
||||
echo " `getLine $controlDict stopAt`"
|
||||
fi
|
||||
|
||||
|
||||
|
||||
#- Just to make sure time has changed
|
||||
touch ${controlDict}
|
||||
|
||||
sleep 5
|
||||
|
||||
#- Give bak a later date
|
||||
touch ${controlDict}_bak
|
||||
|
||||
#- Loop a while to give NFS time to update
|
||||
if [ ${controlDict} -nt ${controlDict}_bak ]
|
||||
then
|
||||
echo "$Script : controlDict newer than controlDict_bak"
|
||||
echo "$Script : Waiting for file dates to get updated"
|
||||
|
||||
iter=0
|
||||
while [ ${controlDict} -nt ${controlDict}_bak ]
|
||||
do
|
||||
if [ $iter -ge 120 ]
|
||||
then
|
||||
#- 120*5 sec = 10 mins passed. Give up
|
||||
echo "$Script : File date not yet ok after 10 mins ... giving up"
|
||||
break
|
||||
fi
|
||||
#- Give _bak a later time
|
||||
touch ${controlDict}_bak
|
||||
|
||||
#- Give NFS a chance to update time on controlDict.
|
||||
sleep 5
|
||||
|
||||
iter=`expr $iter + 1`
|
||||
done
|
||||
fi
|
||||
|
||||
#
|
||||
#- Start waiting until:
|
||||
# - pid finished. Restore controlDict.
|
||||
# - controlDict modified. No restore.
|
||||
# - controlDict_bak removed. No restore.
|
||||
|
||||
echo "$Script : Waiting for OpenFOAM job $PID to finish ..."
|
||||
|
||||
while true
|
||||
do
|
||||
sleep 5
|
||||
|
||||
[ -r ${controlDict}_bak ] || {
|
||||
echo "$Script : ${controlDict}_bak disappeared. Exiting without restore"
|
||||
exit 1
|
||||
}
|
||||
|
||||
if [ ${controlDict} -nt ${controlDict}_bak ]
|
||||
then
|
||||
echo "$Script : ${controlDict} modified externally. Exiting without restore"
|
||||
exit 0
|
||||
fi
|
||||
|
||||
processExists $PID
|
||||
if [ $? -ne 0 ]
|
||||
then
|
||||
#- Job finished
|
||||
break
|
||||
fi
|
||||
# echo "OpenFOAM job $PID still running ..."
|
||||
done
|
||||
|
||||
#- Dictionary restore
|
||||
restoreDict
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
@ -1,284 +0,0 @@
|
||||
#!/bin/sh
|
||||
#------------------------------------------------------------------------------
|
||||
# ========= |
|
||||
# \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
|
||||
# \\ / O peration |
|
||||
# \\ / A nd | Copyright (C) 2011 OpenFOAM Foundation
|
||||
# \\/ M anipulation |
|
||||
#-------------------------------------------------------------------------------
|
||||
# License
|
||||
# This file is part of OpenFOAM.
|
||||
#
|
||||
# OpenFOAM is free software: you can redistribute it and/or modify it
|
||||
# under the terms of the GNU General Public License as published by
|
||||
# the Free Software Foundation, either version 3 of the License, or
|
||||
# (at your option) any later version.
|
||||
#
|
||||
# OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
|
||||
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
|
||||
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
|
||||
# for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU General Public License
|
||||
# along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
|
||||
#
|
||||
# Script
|
||||
# foamPrintJobs
|
||||
#
|
||||
# Description
|
||||
# Uses finishedJobs/ and runningJobs/ and stateFile to print job info
|
||||
#
|
||||
#------------------------------------------------------------------------------
|
||||
Script=${0##*/}
|
||||
|
||||
JOBSTRING='%4s %8s %20s %10s %8s %4s %12s %12s %20s\n'
|
||||
DEFSTATEFILE=$HOME/.OpenFOAM/foamCheckJobs.out
|
||||
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
#
|
||||
# Functions
|
||||
#
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
usage() {
|
||||
cat<<USAGE
|
||||
Usage: $Script [stateFile]
|
||||
|
||||
This program prints a table of all running and finished jobs.
|
||||
|
||||
It is normally used in conjunction with foamCheckJobs which outputs
|
||||
a "stateFile" containing the actual process status of all jobs.
|
||||
|
||||
If stateFile is not supplied, the default is used:
|
||||
$DEFSTATEFILE
|
||||
USAGE
|
||||
exit 1
|
||||
}
|
||||
|
||||
|
||||
# printJob stat user case machine pid ncpus start end code
|
||||
printJob() {
|
||||
printf "$JOBSTRING" "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8" "$9"
|
||||
}
|
||||
|
||||
|
||||
# getRawEntry dictionary entry
|
||||
# Prints value of dictionary entry
|
||||
getRawEntry() {
|
||||
grep -v '^//' $1 | grep "^[ \t]*$2 " | sed -e "s/^[ \t]*$2 [ ]*//"
|
||||
}
|
||||
|
||||
# getEntry dictionary entry
|
||||
# Like getRawEntry but strips " and ending ';'
|
||||
getEntry() {
|
||||
getRawEntry $1 $2 | sed -e 's/^"//' -e 's/;$//' -e 's/"$//'
|
||||
}
|
||||
|
||||
|
||||
# notEmpty directory
|
||||
# Returns 0 if directory contains files/directories
|
||||
notEmpty() {
|
||||
if [ "`ls $1`" ]
|
||||
then
|
||||
return 0
|
||||
else
|
||||
return 1
|
||||
fi
|
||||
}
|
||||
|
||||
# rightStr nChars string
|
||||
# Prints rightmost nChars of string
|
||||
rightStr() {
|
||||
echo "$2" | sed -e "s/.*\(.\{$1\}\)\$/\1/"
|
||||
}
|
||||
|
||||
leftStr() {
|
||||
echo "$2" | sed -e "s/\(.\{$1\}\).*/\1/"
|
||||
}
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
#
|
||||
# Main
|
||||
#
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
if [ $# -eq 1 ]
|
||||
then
|
||||
if [ "$1" = "-h" -o "$1" = "-help" ]
|
||||
then
|
||||
usage
|
||||
else
|
||||
STATEFILE="$1"
|
||||
fi
|
||||
elif [ $# -eq 0 ]
|
||||
then
|
||||
STATEFILE=${STATEFILE:-$DEFSTATEFILE}
|
||||
else
|
||||
usage
|
||||
fi
|
||||
|
||||
#- Check a few things
|
||||
|
||||
if [ ! "$FOAM_JOB_DIR" ]
|
||||
then
|
||||
echo "$Script : FOAM_JOB_DIR environment variable not set."
|
||||
echo
|
||||
exit 1
|
||||
fi
|
||||
if [ ! -d "$FOAM_JOB_DIR" ]
|
||||
then
|
||||
echo "$Script : directory does not exist."
|
||||
echo " FOAM_JOB_DIR=$FOAM_JOB_DIR"
|
||||
echo
|
||||
exit 1
|
||||
fi
|
||||
if [ ! -d "$FOAM_JOB_DIR/runningJobs" -o ! -d "$FOAM_JOB_DIR/finishedJobs" ]
|
||||
then
|
||||
echo "$Script : invalid directory."
|
||||
echo " FOAM_JOB_DIR=$FOAM_JOB_DIR"
|
||||
echo
|
||||
exit 1
|
||||
fi
|
||||
|
||||
|
||||
if [ -f "$STATEFILE" ]
|
||||
then
|
||||
echo ""
|
||||
echo "Using process information from"
|
||||
echo " $STATEFILE"
|
||||
echo "on jobs in"
|
||||
echo " $FOAM_JOB_DIR"
|
||||
echo ""
|
||||
else
|
||||
echo ""
|
||||
echo "Cannot read $STATEFILE."
|
||||
echo ""
|
||||
STATEFILE=''
|
||||
fi
|
||||
|
||||
|
||||
#-- print header
|
||||
printJob 'stat' 'user' 'case' 'machine' 'pid' 'ncpu' 'start' 'end' 'code'
|
||||
printJob '----' '----' '----' '-------' '---' '----' '-----' '---' '----'
|
||||
|
||||
|
||||
|
||||
#-- print submitted
|
||||
|
||||
|
||||
#-- print running
|
||||
echo "Running:"
|
||||
if notEmpty $FOAM_JOB_DIR/runningJobs
|
||||
then
|
||||
for f in `ls -t $FOAM_JOB_DIR/runningJobs/*`
|
||||
do
|
||||
machinePid=`basename $f`
|
||||
|
||||
machine=`echo $machinePid | sed -e 's/\..*$//'`
|
||||
machine=`rightStr 10 "$machine"`
|
||||
|
||||
pid=`echo $machinePid | sed -e 's/.*\.\([0-9][0-9]*\)$/\1/'`
|
||||
|
||||
if [ "$STATEFILE" ]
|
||||
then
|
||||
stat=`getEntry $STATEFILE $machinePid`
|
||||
fi
|
||||
stat=${stat:-'UNKN'}
|
||||
|
||||
case=`getEntry $f 'case'`
|
||||
case=${case:-'---'}
|
||||
case=`echo $case | sed -e 's!/.*!!'` # strip processorXXX ending
|
||||
case=`rightStr 20 "$case"`
|
||||
|
||||
start=`getEntry $f 'startDate'`
|
||||
start=${start:-'---'}
|
||||
start=`leftStr 12 "$start"`
|
||||
|
||||
end='---'
|
||||
|
||||
code=`getEntry $f 'code'`
|
||||
if [ "$code" ]
|
||||
then
|
||||
code=`basename $code`
|
||||
else
|
||||
code='---'
|
||||
fi
|
||||
code=`rightStr 20 "$code"`
|
||||
|
||||
nProcs=`getEntry $f 'nProcs'`
|
||||
nProcs=${nProcs:-'1'}
|
||||
if [ $nProcs -eq 1 ]
|
||||
then
|
||||
nProcs='---'
|
||||
fi
|
||||
nProcs=`rightStr 3 "$nProcs"`
|
||||
|
||||
user=`getEntry $f 'userName'`
|
||||
user=${user:-'---'}
|
||||
user=`leftStr 8 "$user"`
|
||||
|
||||
printJob "$stat" "$user" "$case" "$machine" "$pid" "$nProcs" "$start" "$end" "$code"
|
||||
done
|
||||
fi
|
||||
|
||||
|
||||
#-- print finished
|
||||
echo ""
|
||||
echo "Finished:"
|
||||
if notEmpty $FOAM_JOB_DIR/finishedJobs
|
||||
then
|
||||
for f in `ls -t $FOAM_JOB_DIR/finishedJobs/*`
|
||||
do
|
||||
machinePid=`basename $f`
|
||||
|
||||
machine=`echo $machinePid | sed -e 's/\..*$//'`
|
||||
machine=`rightStr 10 "$machine"`
|
||||
|
||||
pid=`echo $machinePid | sed -e 's/.*\.\([0-9][0-9]*\)$/\1/'`
|
||||
|
||||
end=`getEntry $f endDate`
|
||||
end=${end:-'---'}
|
||||
end=`leftStr 12 "$end"`
|
||||
|
||||
if [ "$STATEFILE" ]
|
||||
then
|
||||
stat=`getEntry $STATEFILE $machinePid`
|
||||
fi
|
||||
stat=${stat:-'UNKN'}
|
||||
|
||||
case=`getEntry $f case`
|
||||
case=`echo $case | sed -e 's!/.*!!'` # strip processorXXX ending
|
||||
case=${case:-'---'}
|
||||
case=`rightStr 20 "$case"`
|
||||
|
||||
start=`getEntry $f startDate`
|
||||
start=${start:-'---'}
|
||||
start=`leftStr 12 "$start"`
|
||||
|
||||
code=`getEntry $f code`
|
||||
if [ "$code" ]
|
||||
then
|
||||
code=`basename $code`
|
||||
else
|
||||
code='---'
|
||||
fi
|
||||
code=`rightStr 20 "$code"`
|
||||
|
||||
nProcs=`getEntry $f 'nProcs'`
|
||||
nProcs=${nProcs:-'1'}
|
||||
if [ $nProcs -eq 1 ]
|
||||
then
|
||||
nProcs='---'
|
||||
fi
|
||||
nProcs=`rightStr 3 "$nProcs"`
|
||||
|
||||
user=`getEntry $f 'userName'`
|
||||
user=${user:-'---'}
|
||||
user=`leftStr 8 "$user"`
|
||||
|
||||
printJob "$stat" "$user" "$case" "$machine" "$pid" "$nProcs" "$start" "$end" "$code"
|
||||
done
|
||||
fi
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
@ -1,117 +0,0 @@
|
||||
#!/bin/sh
|
||||
#------------------------------------------------------------------------------
|
||||
# ========= |
|
||||
# \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
|
||||
# \\ / O peration |
|
||||
# \\ / A nd | Copyright (C) 2011 OpenFOAM Foundation
|
||||
# \\/ M anipulation |
|
||||
#-------------------------------------------------------------------------------
|
||||
# License
|
||||
# This file is part of OpenFOAM.
|
||||
#
|
||||
# OpenFOAM is free software: you can redistribute it and/or modify it
|
||||
# under the terms of the GNU General Public License as published by
|
||||
# the Free Software Foundation, either version 3 of the License, or
|
||||
# (at your option) any later version.
|
||||
#
|
||||
# OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
|
||||
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
|
||||
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
|
||||
# for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU General Public License
|
||||
# along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
|
||||
#
|
||||
# Script
|
||||
# foamProcessInfo
|
||||
#
|
||||
# Description
|
||||
# Collects user's process status information into file. File contains one
|
||||
# line per process:
|
||||
#
|
||||
# pid state command
|
||||
#
|
||||
# state is one of 'RUNN' 'SUSP' 'OTHR',
|
||||
# command is the argv[0]
|
||||
#
|
||||
# Tested on Linux,IRIX,SunOS
|
||||
#
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
PROGNAME=`basename $0`
|
||||
TMPFILE=/tmp/${PROGNAME}$$.tmp
|
||||
AWKFILE=/tmp/${PROGNAME}$$.awk
|
||||
|
||||
if [ `uname -s` = Linux ]
|
||||
then
|
||||
ECHO='echo -e'
|
||||
else
|
||||
ECHO='echo'
|
||||
fi
|
||||
|
||||
|
||||
if [ $# -ne 1 ]
|
||||
then
|
||||
echo "Error : $PROGNAME : insufficient arguments" 1>&2
|
||||
exit 1
|
||||
fi
|
||||
|
||||
|
||||
outputFile=$1
|
||||
rm -f $outputFile
|
||||
|
||||
|
||||
ARCH=`uname`
|
||||
|
||||
#-- Force standards behaving ps
|
||||
# Get info on all $USER processes
|
||||
case $ARCH in
|
||||
HP-UX*)
|
||||
UNIX95=a; export UNIX95
|
||||
;;
|
||||
IRIX*)
|
||||
_XPG=1; export _XPG
|
||||
;;
|
||||
esac
|
||||
|
||||
case $ARCH in
|
||||
SunOS*)
|
||||
ps -e -o 'pid,f,s,comm' > $TMPFILE
|
||||
;;
|
||||
HP-UX*)
|
||||
ps -e -o 'pid,flags,state,comm' > $TMPFILE
|
||||
;;
|
||||
*)
|
||||
ps -e -o 'pid,flag,state,comm' > $TMPFILE
|
||||
esac
|
||||
|
||||
|
||||
rm -f $AWKFILE; touch $AWKFILE
|
||||
case $ARCH in
|
||||
IRIX*)
|
||||
echo '($2 == 40) || ($3 == "T") {print $1 " SUSP // " $4; next}' >> $AWKFILE
|
||||
echo '($3 == "R") || ($3 == "S") || ($3 == "D") {print $1 " RUNN // " $4; next}' >> $AWKFILE
|
||||
echo '{print $1 " OTHR // " $4}' >> $AWKFILE
|
||||
;;
|
||||
Linux*)
|
||||
echo '($3 == "T") {print $1 " SUSP // " $4; next}' >> $AWKFILE
|
||||
echo '($3 == "R") || ($3 == "S") || ($3 == "D") {print $1 " RUNN // " $4; next}' >> $AWKFILE
|
||||
echo '{print $1 " OTHR // " $4}' >> $AWKFILE
|
||||
;;
|
||||
SunOS*)
|
||||
echo '($3 == "T") {print $1 " SUSP // " $4; next}' >> $AWKFILE
|
||||
echo '($3 == "O") || ($3 == "S") || ($3 == "R") {print $1 " RUNN // " $4; next}' >> $AWKFILE
|
||||
echo '{print $1 " OTHR // " $4}' >> $AWKFILE
|
||||
;;
|
||||
*)
|
||||
echo "Error : $PROGNAME : unsupported achitecture $ARCH"
|
||||
;;
|
||||
esac
|
||||
|
||||
$ECHO "(" > $outputFile
|
||||
tail +2 $TMPFILE | awk -f $AWKFILE >> $outputFile
|
||||
$ECHO ")" >> $outputFile
|
||||
|
||||
rm -f $TMPFILE $AWKFILE
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
Reference in New Issue
Block a user