Doxyfile: include .L files and exclude .C files which clash with application source files

Resolves bug-report https://bugs.openfoam.org/view.php?id=3070

doc/Doxygen/Doxyfile

@@ -795,7 +795,7 @@ INPUT_ENCODING         = UTF-8
 
 FILE_PATTERNS          = *.H \
                          *.C \
-                         *.dox
+                         *.L
 
 # The RECURSIVE tag can be used to specify whether or not subdirectories should
 # be searched for input files as well.
@@ -810,7 +810,11 @@ RECURSIVE              = YES
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 
-EXCLUDE                = $(WM_PROJECT_DIR)/src/mesh/blockMesh/blockMesh/blockMesh.C
+EXCLUDE                = \
+    $(WM_PROJECT_DIR)/src/mesh/blockMesh/blockMesh/blockMesh.C \
+    $(WM_PROJECT_DIR)/src/dynamicMesh/polyTopoChange/polyTopoChange/removeFaces.C \
+    $(WM_PROJECT_DIR)/src/meshTools/sets/topoSets/topoSet.C \
+    $(WM_PROJECT_DIR)/src/conversion/polyDualMesh/polyDualMesh.C
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded

src/finiteVolume/fields/fvPatchFields/doc/boundaryConditions.dox

@@ -1,97 +0,0 @@
-/*---------------------------------------------------------------------------*\
-  =========                 |
-  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
-   \\    /   O peration     | Website:  https://openfoam.org
-    \\  /    A nd           | Copyright (C) 2012-2018 OpenFOAM Foundation
-     \\/     M anipulation  |
--------------------------------------------------------------------------------
-License
-    This file is part of OpenFOAM.
-
-    OpenFOAM is free software: you can redistribute it and/or modify it
-    under the terms of the GNU General Public License as published by
-    the Free Software Foundation, either version 3 of the License, or
-    (at your option) any later version.
-
-    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-    for more details.
-
-    You should have received a copy of the GNU General Public License
-    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-\page pageBoundaryConditions Boundary Conditions
-\ref grpBoundaryConditions are required to 'close' the simulation problem.
-Careful attention should be applied to their selection so as to create a
-well-posed system of equations, which can be solved numerically.
-
-\section secBoundaryConditionsOverview Overview
-The set of available \ref grpBoundaryConditions comprise of basic, turbulent and
-thermophysical types.
-
-\subsection secBC1 Basic boundary conditions
-    - \ref grpConstraintBoundaryConditions
-    - \ref grpInletBoundaryConditions
-    - \ref grpOutletBoundaryConditions
-    - \ref grpGenericBoundaryConditions
-    - \ref grpCoupledBoundaryConditions
-    - \ref grpWallBoundaryConditions
-
-\subsection secBC2 Turbulent flow boundary conditions
-    - \ref grpRASBoundaryConditions
-
-\subsection secBC3 Thermophysical boundary conditions
-    - \ref grpThermoBoundaryConditions
-
-
-\section secWallFunctions Wall-functions
-Wall-functions in OpenFOAM are modelled as boundary conditions, applied to
-the viscosity for momentum, and thermal diffusivity for energy.
-
-Wall-functions
-    - \ref grpWallFunctions
-
-Thermal wall-functions for incompressible flow
-    - \ref grpIcoWallFunctions
-
-Thermal wall-functions for compressible flow
-    - \ref grpCmpWallFunctions
-
-
-\section secBoundaryConditions Typical usage for pressure-velocity systems
-The choice as to the most appropriate set of boundary conditions is dictated by
-the type of flow problem.  In many cases, multiple possible selections exist;
-the following tables offer suggestions for subsonic flow.
-
-subsonic inlet (flow specified):
-\table
-    Variable             | Symbol | Type
-    pressure             | p      | \link Foam::zeroGradientFvPatchField zeroGradient\endlink
-    velocity             | U      | \link Foam::fixedValueFvPatchField fixedValue\endlink
-    transported property | -      | \link Foam::fixedValueFvPatchField fixedValue\endlink
-    derived property     | -      | \link Foam::calculatedFvPatchField calculated\endlink or \link Foam::zeroGradientFvPatchField zeroGradient\endlink
-\endtable
-
-subsonic outlet:
-\table
-    Variable             | Symbol | Type
-    pressure             | p      | \link Foam::fixedValueFvPatchField fixedValue\endlink
-    velocity             | U      | \link Foam::inletOutletFvPatchField inletOutlet\endlink or \link Foam::pressureInletOutletVelocityFvPatchVectorField pressureInletOutletVelocity\endlink
-    transported property | -      | \link Foam::inletOutletFvPatchField inletOutlet\endlink
-    derived property     | -      | \link Foam::calculatedFvPatchField calculated\endlink or \link Foam::zeroGradientFvPatchField zeroGradient\endlink
-\endtable
-
-wall (impermeable, non-slip):
-\table
-    Variable             | Symbol | Type
-    pressure             | p      | \link Foam::zeroGradientFvPatchField zeroGradient\endlink
-    velocity             | U      | \link Foam::fixedValueFvPatchField fixedValue\endlink
-    transported property | -      | \link Foam::fixedValueFvPatchField fixedValue\endlink
-    derived property     | -      | \link Foam::calculatedFvPatchField calculated\endlink or \link Foam::zeroGradientFvPatchField zeroGradient\endlink
-\endtable
-
-
-\*---------------------------------------------------------------------------*/