postProcessing: Replaced 'foamCalc' and the 'postCalc' utilities

with the more general and flexible 'postProcess' utility and '-postProcess' solver option

Rationale
---------

Both the 'postProcess' utility and '-postProcess' solver option use the
same extensive set of functionObjects available for data-processing
during the run avoiding the substantial code duplication necessary for
the 'foamCalc' and 'postCalc' utilities and simplifying maintenance.
Additionally consistency is guaranteed between solver data processing
and post-processing.

The functionObjects have been substantially re-written and generalized
to simplify development and encourage contribution.

Configuration
-------------

An extensive set of simple functionObject configuration files are
provided in

OpenFOAM-dev/etc/caseDicts/postProcessing

and more will be added in the future.  These can either be copied into
'<case>/system' directory and included into the 'controlDict.functions'
sub-dictionary or included directly from 'etc/caseDicts/postProcessing'
using the '#includeEtc' directive or the new and more convenient
'#includeFunc' directive which searches the
'<etc>/caseDicts/postProcessing' directories for the selected
functionObject, e.g.

functions
{
    #includeFunc Q
    #includeFunc Lambda2
}

'#includeFunc' first searches the '<case>/system' directory in case
there is a local configuration.

Description of #includeFunc
---------------------------

    Specify a functionObject dictionary file to include, expects the
    functionObject name to follow (without quotes).

    Search for functionObject dictionary file in
    user/group/shipped directories.
    The search scheme allows for version-specific and
    version-independent files using the following hierarchy:
    - \b user settings:
      - ~/.OpenFOAM/\<VERSION\>/caseDicts/postProcessing
      - ~/.OpenFOAM/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is set):
      - $WM_PROJECT_SITE/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_SITE/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is not set):
      - $WM_PROJECT_INST_DIR/site/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_INST_DIR/site/caseDicts/postProcessing
    - \b other (shipped) settings:
      - $WM_PROJECT_DIR/etc/caseDicts/postProcessing

    An example of the \c \#includeFunc directive:
    \verbatim
        #includeFunc <funcName>
    \endverbatim

postProcess
-----------

The 'postProcess' utility and '-postProcess' solver option provide the
same set of controls to execute functionObjects after the run either by
reading a specified set of fields to process in the case of
'postProcess' or by reading all fields and models required to start the
run in the case of '-postProcess' for each selected time:

postProcess -help

Usage: postProcess [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

 pimpleFoam -postProcess -help

Usage: pimpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

The functionObjects to execute may be specified on the command-line
using the '-func' option for a single functionObject or '-funcs' for a
list, e.g.

postProcess -func Q
postProcess -funcs '(div(U) div(phi))'

In the case of 'Q' the default field to process is 'U' which is
specified in and read from the configuration file but this may be
overridden thus:

postProcess -func 'Q(Ua)'

as is done in the example above to calculate the two forms of the divergence of
the velocity field.  Additional fields which the functionObjects may depend on
can be specified using the '-field' or '-fields' options.

The 'postProcess' utility can only be used to execute functionObjects which
process fields present in the time directories.  However, functionObjects which
depend on fields obtained from models, e.g. properties derived from turbulence
models can be executed using the '-postProcess' of the appropriate solver, e.g.

pisoFoam -postProcess -func PecletNo

or

sonicFoam -postProcess -func MachNo

In this case all required fields will have already been read so the '-field' or
'-fields' options are not be needed.

Henry G. Weller
CFD Direct Ltd.
This commit is contained in:
Henry Weller
2016-05-28 18:58:48 +01:00
parent 7a3f939aae
commit 8b672f0f1a
394 changed files with 1450 additions and 5384 deletions

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/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2016 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
\*---------------------------------------------------------------------------*/
#include "abort.H"
#include "dictionary.H"
#include "error.H"
#include "Time.H"
#include "OSspecific.H"
#include "PstreamReduceOps.H"
#include "addToRunTimeSelectionTable.H"
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
namespace Foam
{
namespace functionObjects
{
defineTypeNameAndDebug(abort, 0);
addToRunTimeSelectionTable
(
functionObject,
abort,
dictionary
);
}
}
template<>
const char* Foam::NamedEnum
<
Foam::functionObjects::abort::actionType,
3
>::names[] =
{
"noWriteNow",
"writeNow",
"nextWrite"
};
const Foam::NamedEnum
<
Foam::functionObjects::abort::actionType,
3
> Foam::functionObjects::abort::actionTypeNames_;
// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
void Foam::functionObjects::abort::removeFile() const
{
bool hasAbort = isFile(abortFile_);
reduce(hasAbort, orOp<bool>());
if (hasAbort && Pstream::master())
{
// Cleanup ABORT file (on master only)
rm(abortFile_);
}
}
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
Foam::functionObjects::abort::abort
(
const word& name,
const Time& runTime,
const dictionary& dict
)
:
functionObject(name),
time_(runTime),
abortFile_("$FOAM_CASE/" + name),
action_(nextWrite)
{
abortFile_.expand();
read(dict);
// Remove any old files from previous runs
removeFile();
}
// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
Foam::functionObjects::abort::~abort()
{}
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
bool Foam::functionObjects::abort::read(const dictionary& dict)
{
if (dict.found("action"))
{
action_ = actionTypeNames_.read(dict.lookup("action"));
}
else
{
action_ = nextWrite;
}
if (dict.readIfPresent("fileName", abortFile_))
{
abortFile_.expand();
}
return true;
}
bool Foam::functionObjects::abort::execute(const bool postProcess)
{
bool hasAbort = isFile(abortFile_);
reduce(hasAbort, orOp<bool>());
if (hasAbort)
{
switch (action_)
{
case noWriteNow :
{
if (time_.stopAt(Time::saNoWriteNow))
{
Info<< "USER REQUESTED ABORT (timeIndex="
<< time_.timeIndex()
<< "): stop without writing data"
<< endl;
}
break;
}
case writeNow :
{
if (time_.stopAt(Time::saWriteNow))
{
Info<< "USER REQUESTED ABORT (timeIndex="
<< time_.timeIndex()
<< "): stop+write data"
<< endl;
}
break;
}
case nextWrite :
{
if (time_.stopAt(Time::saNextWrite))
{
Info<< "USER REQUESTED ABORT (timeIndex="
<< time_.timeIndex()
<< "): stop after next data write"
<< endl;
}
break;
}
}
}
return true;
}
bool Foam::functionObjects::abort::write(const bool postProcess)
{
return true;
}
bool Foam::functionObjects::abort::end()
{
removeFile();
return true;
}
// ************************************************************************* //

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@ -0,0 +1,152 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2016 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
Class
Foam::functionObjects::abort
Group
grpUtilitiesFunctionObjects
Description
Watches for presence of the named file in the $FOAM_CASE directory
and aborts the calculation if it is present.
Currently the following action types are supported:
- noWriteNow
- writeNow
- nextWrite
SourceFiles
abort.C
\*---------------------------------------------------------------------------*/
#ifndef functionObjects_abort_H
#define functionObjects_abort_H
#include "functionObject.H"
#include "NamedEnum.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
namespace Foam
{
namespace functionObjects
{
/*---------------------------------------------------------------------------*\
Class abort Declaration
\*---------------------------------------------------------------------------*/
class abort
:
public functionObject
{
public:
// Public data
//- Enumeration defining the type of action
enum actionType
{
noWriteNow, //!< stop immediately without writing data
writeNow, //!< write data and stop immediately
nextWrite //!< stop the next time data are written
};
private:
// Private data
//- Reference to the Time
const Time& time_;
//- The fully-qualified name of the abort file
fileName abortFile_;
//- Action type names
static const NamedEnum<actionType, 3> actionTypeNames_;
//- The type of action
actionType action_;
// Private Member Functions
//- Remove abort file.
void removeFile() const;
//- Disallow default bitwise copy construct
abort(const abort&);
//- Disallow default bitwise assignment
void operator=(const abort&);
public:
//- Runtime type information
TypeName("abort");
// Constructors
//- Construct from Time and dictionary
abort
(
const word& name,
const Time& runTime,
const dictionary&
);
//- Destructor
virtual ~abort();
// Member Functions
//- Read the dictionary settings
virtual bool read(const dictionary&);
//- Execute, check existence of abort file and take action
virtual bool execute(const bool postProcess = false);
//- Execute, check existence of abort file and take action
virtual bool write(const bool postProcess = false);
//- Execute at the final time-loop, used for cleanup
virtual bool end();
};
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
} // End namespace functionObjects
} // End namespace Foam
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#endif
// ************************************************************************* //