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121 Commits

Author SHA1 Message Date
3980082fe2 Added forward declaration of friend functions 2016-05-29 22:28:37 +01:00
8b672f0f1a postProcessing: Replaced 'foamCalc' and the 'postCalc' utilities
with the more general and flexible 'postProcess' utility and '-postProcess' solver option

Rationale
---------

Both the 'postProcess' utility and '-postProcess' solver option use the
same extensive set of functionObjects available for data-processing
during the run avoiding the substantial code duplication necessary for
the 'foamCalc' and 'postCalc' utilities and simplifying maintenance.
Additionally consistency is guaranteed between solver data processing
and post-processing.

The functionObjects have been substantially re-written and generalized
to simplify development and encourage contribution.

Configuration
-------------

An extensive set of simple functionObject configuration files are
provided in

OpenFOAM-dev/etc/caseDicts/postProcessing

and more will be added in the future.  These can either be copied into
'<case>/system' directory and included into the 'controlDict.functions'
sub-dictionary or included directly from 'etc/caseDicts/postProcessing'
using the '#includeEtc' directive or the new and more convenient
'#includeFunc' directive which searches the
'<etc>/caseDicts/postProcessing' directories for the selected
functionObject, e.g.

functions
{
    #includeFunc Q
    #includeFunc Lambda2
}

'#includeFunc' first searches the '<case>/system' directory in case
there is a local configuration.

Description of #includeFunc
---------------------------

    Specify a functionObject dictionary file to include, expects the
    functionObject name to follow (without quotes).

    Search for functionObject dictionary file in
    user/group/shipped directories.
    The search scheme allows for version-specific and
    version-independent files using the following hierarchy:
    - \b user settings:
      - ~/.OpenFOAM/\<VERSION\>/caseDicts/postProcessing
      - ~/.OpenFOAM/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is set):
      - $WM_PROJECT_SITE/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_SITE/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is not set):
      - $WM_PROJECT_INST_DIR/site/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_INST_DIR/site/caseDicts/postProcessing
    - \b other (shipped) settings:
      - $WM_PROJECT_DIR/etc/caseDicts/postProcessing

    An example of the \c \#includeFunc directive:
    \verbatim
        #includeFunc <funcName>
    \endverbatim

postProcess
-----------

The 'postProcess' utility and '-postProcess' solver option provide the
same set of controls to execute functionObjects after the run either by
reading a specified set of fields to process in the case of
'postProcess' or by reading all fields and models required to start the
run in the case of '-postProcess' for each selected time:

postProcess -help

Usage: postProcess [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

 pimpleFoam -postProcess -help

Usage: pimpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

The functionObjects to execute may be specified on the command-line
using the '-func' option for a single functionObject or '-funcs' for a
list, e.g.

postProcess -func Q
postProcess -funcs '(div(U) div(phi))'

In the case of 'Q' the default field to process is 'U' which is
specified in and read from the configuration file but this may be
overridden thus:

postProcess -func 'Q(Ua)'

as is done in the example above to calculate the two forms of the divergence of
the velocity field.  Additional fields which the functionObjects may depend on
can be specified using the '-field' or '-fields' options.

The 'postProcess' utility can only be used to execute functionObjects which
process fields present in the time directories.  However, functionObjects which
depend on fields obtained from models, e.g. properties derived from turbulence
models can be executed using the '-postProcess' of the appropriate solver, e.g.

pisoFoam -postProcess -func PecletNo

or

sonicFoam -postProcess -func MachNo

In this case all required fields will have already been read so the '-field' or
'-fields' options are not be needed.

Henry G. Weller
CFD Direct Ltd.
2016-05-28 18:58:48 +01:00
c2328cba3c fileName: Added recursive directory search function
//- Recursively search the given directory for the file
    //  returning the path relative to the directory or
    //  fileName::null if not found
    fileName search(const word& file, const fileName& directory);
2016-05-26 21:43:16 +01:00
ae9889697e Scalar: Documented 'posPart' and 'negPart' 2016-05-19 09:39:45 +01:00
4500971827 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
1441f8cab0 Patches contributed by Mattijs Janssens:
splitMeshRegions: handle flipping of faces for surface fields

subsetMesh: subset dimensionedFields

decomposePar: use run-time selection of decomposition constraints. Used to
    keep cells on particular processors. See the decomposeParDict in

$FOAM_UTILITIES/parallel/decomposePar:
  - preserveBaffles: keep baffle faces on same processor
  - preserveFaceZones: keep faceZones owner and neighbour on same processor
  - preservePatches: keep owner and neighbour on same processor. Note: not
    suitable for cyclicAMI since these are not coupled on the patch level
  - singleProcessorFaceSets: keep complete faceSet on a single processor
  - refinementHistory: keep cells originating from a single cell on the
    same processor.

decomposePar: clean up decomposition of refinement data from snappyHexMesh

reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)

reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)

redistributePar:
  - corrected mapping surfaceFields
  - adding processor patches in order consistent with decomposePar

argList: check that slaves are running same version as master

fvMeshSubset: move to dynamicMesh library

fvMeshDistribute:
  - support for mapping dimensionedFields
  - corrected mapping of surfaceFields

parallel routines: allow parallel running on single processor

Field: support for
  - distributed mapping
  - mapping with flipping

mapDistribute: support for flipping

AMIInterpolation: avoid constructing localPoints
2016-05-15 16:36:48 +01:00
758dfc2c1f Standardized the naming of functions which control the writing of fields etc.
to have the prefix 'write' rather than 'output'

So outputTime() -> writeTime()

but 'outputTime()' is still supported for backward-compatibility.

Also removed the redundant secondary-writing functionality from Time
which has been superseded by the 'writeRegisteredObject' functionObject.
2016-05-12 17:38:01 +01:00
e1205379eb Doxygen documentation: Use C++-style comments for enumeration elements 2016-05-11 23:10:42 +01:00
b72b9dcf88 primitives/direction: Changed from "char" to "int8_t" and added IO operators
to avoid problems when writing "nComponents"
2016-05-06 17:40:49 +01:00
cb9732204d Replaced StaticAssert with the C++11 equivalent static_assert 2016-04-26 20:44:55 +01:00
6fd4ce6cc3 Revert "src/postProcessing/functionObjects/field/Make/files: Corrected"
This reverts commit 73fe45cd27.
2016-04-26 20:33:45 +01:00
73fe45cd27 src/postProcessing/functionObjects/field/Make/files: Corrected 2016-04-26 20:31:58 +01:00
a8bf4be58a Standardized cell, patch, face and processor loop index names 2016-04-25 12:00:53 +01:00
8c4f6b8fcb Standardized cell, patch and face loop index names 2016-04-25 10:28:32 +01:00
56059e7fb9 Tensor, SymmTensor: Simplified invariantII
Now the calculation of the 2nd-invariant is more efficient and
accumulates less round-off error.
2016-04-21 21:07:39 +01:00
99a987f1d5 src/OpenFOAM/primitives: inherit operator=(const Foam::zero) from base class where appropriate 2016-04-17 21:02:57 +01:00
287603474a vector::zero -> Zero 2016-04-16 18:34:41 +01:00
fc32d53828 quaternion/septernion: Added multi- quaternion/septernion averaging
Using method based on
http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/20070017872.pdf
but simplified for the case where the quaternions are similar.
2016-04-16 15:59:05 +01:00
860a82c0d4 vector::zero -> Zero 2016-04-15 11:32:42 +01:00
6a5d5e903e septernion: Changed definition of the forward transformation for consistency with spatialTransform
inline Foam::vector Foam::septernion::transformPoint(const vector& v) const
{
    return r().transform(v - t());
}

Now there is a 1:1 correspondence between septernion and
spatialTransform and a septernion constructor from spatialTransform
provided.

Additionally "septernion::transform" has been renamed
"septernion::transformPoint" to clarify that it transforms coordinate
points rather than displacements or other relative vectors.
2016-04-15 11:27:18 +01:00
4197cb075a quaternion: Added static member function to return a unit quaternion constructed from a vector
//- Return the unit quaternion (versor) from the given vector
    //  (w = sqrt(1 - |sqr(v)|))
    static inline quaternion unit(const vector& v);
2016-04-12 21:43:03 +01:00
292543a3a5 spatialTransform: Added the "&&" operator to transform positions 2016-04-10 23:06:35 +01:00
8ffd700ca6 rigidBodyDynamics: Added dictionary-based IO of the rigidBodyModel 2016-04-07 21:47:08 +01:00
d4476c3946 VectorI: Added dummy innerProduct for scalar
to allow the construction of vtables for virtual member functions
involving the inner-products of fields for which a "NotImplemented"
specialization for scalar is provided.
2016-04-06 14:22:33 +01:00
569b915d5d Updated headers 2016-04-06 14:22:24 +01:00
1ae1b9f1d8 geometricOneField: Enhanced to provide better correspondence to GeometricField 2016-04-06 14:21:04 +01:00
64c08b084e spatialTransformI.H: Corrected doc 2016-04-01 14:53:23 +01:00
84dad12014 spatialTransform: Include spatialTensor.H 2016-03-30 18:17:27 +01:00
c0a1646401 MatrixSpace: Add support for block conversion into VectorSpace 2016-03-30 18:16:47 +01:00
9e5013bcb5 MatrixSpace: Corrected typo 2016-03-30 18:16:20 +01:00
709526bc3a Identity: Make cast-to-primitive operators explicit
to avoid operator resolution ambiguities when compiling single-precision
2016-03-24 23:04:53 +00:00
019bf94006 Matrices: Rename private member 'nRows_' -> 'mRows_' for consistency with access member function 'm()' 2016-03-23 12:49:03 +00:00
44c73bfbe1 Made all template declarations consistent using 'class' rather than 'typename' 2016-03-22 15:02:55 +00:00
feada18b40 Identity: Added conversion to label 2016-03-22 14:12:53 +00:00
da347abc51 Updated header 2016-03-22 14:08:01 +00:00
050ee51ad8 zero: Return Zero rather than zero() 2016-03-22 14:07:38 +00:00
89fa292968 VectorSpaces, MatrixSpaces: Allow automatic conversion from zero 2016-03-22 10:38:59 +00:00
ffe2c2ac46 src/OpenFOAM: Use Zero rather than pTraits<Type> 2016-03-22 10:38:30 +00:00
983b3e2ca4 VectorSpaces, MatrixSpaces: Allow automatic conversion from zero 2016-03-22 10:35:57 +00:00
b49a71a402 zero: Added support for initializing bool 2016-03-22 10:35:13 +00:00
c55d554050 VectorSpaces and MatrixSpaces: Added construction from and assignment to zero 2016-03-22 08:25:50 +00:00
bf6f2b3ed1 zero: Added cast to float and double for consistent scalar and floatScalar initialization and assignment to 0
Zero: New global instance of zero for simple and efficient initialization and assigment of primitives to 0
2016-03-22 08:23:09 +00:00
ec045baafe Identity: Added cast to scalar 2016-03-22 08:22:21 +00:00
767ffc3c7b Matrix: Replace the row-start pointer array with computed offsets
The row-start pointer array provided performance benefits on old
computers but now that computation is often cache-miss limited the
benefit of avoiding a integer multiply is more than offset by the
addition memory access into a separately allocated array.

With the new addressing scheme LUsolve is 15% faster.
2016-03-20 15:00:36 +00:00
e809171540 SpatialVector: Added cross-product and dual cross-product operators
SpatialTensor: Added SpatialVector cross-product and dual cross-product -> SpatialTensor operators
2016-03-18 21:52:27 +00:00
e3bbe40748 SphericalTensor/Identity: Added dual form 2016-03-18 21:52:00 +00:00
0a0e282090 Update header 2016-03-18 11:47:59 +00:00
4ab535bdda Identity: special type derived from SphericalTensor to provide the concept of identity (I)
Allows efficient operators to be defined for the interaction between
types and the equivalent identity.
2016-03-18 11:45:45 +00:00
f528f844db SpatialVector: Added component access member functions
wx(), wy(), wz(), lx(), ly() and lz()
2016-03-17 22:12:48 +00:00
4cc909f1ed spatialTransform: Compact representation of the Plücker spatial transformation tensor
in terms of the rotation tensor \c E and translation vector \c r .

  See Chapter 2 and Appendix A in reference:
     Featherstone, R. (2008).
     Rigid body dynamics algorithms.
     Springer.

    This work is sponsored by Carnegie Wave Energy Ltd

Henry G. Weller
CFD Direct
2016-03-17 20:31:36 +00:00