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CONFIG: support inplace petsc installations

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This commit is contained in:
Mark Olesen
2020-06-18 13:43:09 +02:00
parent b9ace75da8
commit 348b8cd4f4
3 changed files with 107 additions and 85 deletions
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5
BUILD.md
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@ -420,6 +420,7 @@ you may have additional hurdles to using the newest versions of clang.
| [CGAL][page CGAL] | [download][link CGAL]
| [FFTW][page FFTW] | [download][link FFTW]
| [PETSC][page PETSC] | [download][link PETSC]
| [HYPRE][page HYPRE] | [repo][repo HYPRE] or [download][link HYPRE]
| [ADF/CGNS][page CGNS], ccm | [link ccmio][link ccmio]
| gperftools | [repo][repo gperftools] or [download][link gperftools]
@ -565,6 +566,10 @@ easier to use `grep` and find the relevant pages and links.
[page petsc]: https://www.mcs.anl.gov/petsc/
[link petsc]: http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.13.2.tar.gz
[page hypre]: https://computing.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods/
[repo hypre]: https://github.com/hypre-space/hypre/
[link hypre]: https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz
[page cgns]: http://cgns.github.io/
[link ccmio]: http://portal.nersc.gov/project/visit/third_party/libccmio-2.6.1.tar.gz (check usage conditions)
[altlink ccmio]: http://portal.nersc.gov/svn/visit/trunk/third_party/libccmio-2.6.1.tar.gz (check usage conditions)

61
makeHYPRE
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@ -20,35 +20,7 @@
# ----------------------------------------------
# NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
#------------------------------------------------------------------------------
# Dynamic library ending (default is .so)
[ "$(uname -s)" = Darwin ] && EXT_SO=.dylib || EXT_SO=.so
# Short-circuit test for an installation
if [ "$1" = "-test" ]
then
[ "$#" -eq 2 ] || { echo "${0##*/} -test : needs 1 argument"; exit 1; }
dir="${2%/}" # <- HYPRE_ARCH_PATH
if [ -d "$dir/include" ]
then
for lib in \
$FOAM_EXT_LIBBIN/libhypre$EXT_SO \
$dir/lib/libhypre.a \
$dir/lib/libhypre$EXT_SO \
$dir/lib$WM_COMPILER_LIB_ARCH/libhypre.a \
$dir/lib$WM_COMPILER_LIB_ARCH/libhypre$EXT_SO \
;
do
if [ -r "$lib" ]
then
echo " hypre include: $dir/include"
echo " hypre library: ${lib%/*}"
exit 0
fi
done
fi
exit 2
fi
#------------------------------------------------------------------------------
# Run from third-party directory only
cd "${0%/*}" || exit
wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
@ -56,16 +28,11 @@ wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
echo " Check your OpenFOAM environment and installation"
exit 1
}
[ -n "$FOAM_EXT_LIBBIN" ] || {
echo "Error (${0##*/}) : \$FOAM_EXT_LIBBIN not set"
echo " Check your OpenFOAM environment and installation"
exit 1
}
. etc/tools/ThirdPartyFunctions
#------------------------------------------------------------------------------
_foamConfig hypre
hyprePACKAGE=${hypre_version:-hypre-system}
hyprePACKAGE="${hypre_version:-hypre-system}"
targetType=libso
#------------------------------------------------------------------------------
@ -74,7 +41,7 @@ usage() {
while [ "$#" -ge 1 ]; do echo "$1"; shift; done
cat<<USAGE
usage: ${0##*/} [OPTION] [lib|libso] [HYPRE-VERSION]
usage: ${0##*/} [OPTION] [lib|libso] [HYPRE-VERSION] [-- configure-options]
options:
-gcc Force use of gcc/g++
-help
@ -83,6 +50,7 @@ options:
${hyprePACKAGE:-'unspecified hypre version'}
USAGE
showDownloadHint HYPRE
exit 1
}
#------------------------------------------------------------------------------
@ -100,7 +68,7 @@ do
targetType="$1"
;;
hypre-[0-9]*)
hypre-[0-9]* | hypre-git)
hyprePACKAGE="${1%%/}"
unset HYPRE_ARCH_PATH # Avoid inconsistency
;;
@ -114,11 +82,11 @@ done
[ -n "$hyprePACKAGE" ] || die "The hypre-VERSION was not specified"
# Nothing to build
if _foamIsNone $hyprePACKAGE
if _foamIsNone "$hyprePACKAGE"
then
echo "Using hypre-none (skip ThirdParty build of HYPRE)"
exit 0
elif _foamIsSystem $hyprePACKAGE
elif _foamIsSystem "$hyprePACKAGE"
then
echo "Using hypre-system"
exit 0
@ -131,12 +99,12 @@ fi
# HYPRE_ARCH_PATH : installation directory
# HYPRE_SOURCE_DIR : location of the original sources
HYPRE_SOURCE_DIR=$sourceBASE/$hyprePACKAGE
HYPRE_SOURCE_DIR="$sourceBASE/$hyprePACKAGE"
: "${HYPRE_ARCH_PATH:=$installBASE$WM_SIZE_OPTIONS/$hyprePACKAGE}"
[ -d "$HYPRE_SOURCE_DIR" ] || {
echo "Missing sources: '$hyprePACKAGE'"
showDownloadHint HYPER
showDownloadHint HYPRE
exit 1
}
@ -148,17 +116,24 @@ CXX="$(whichMpicxx)"
echo "Starting build: $hyprePACKAGE ($targetType)"
echo
(
# Configuration options:
# Configuration options
unset configOpt
# Additional configure options
if [ "$1" = "--" ]
then
shift
configOpt="$configOpt $@"
fi
cd "$HYPRE_SOURCE_DIR/src" || exit
export GIT_DIR="$PWD/.git" # Mask seeing our own git-repo
rm -rf $HYPRE_ARCH_PATH
rm -rf "$HYPRE_ARCH_PATH"
[ -e Makefile ] && make distclean 2>/dev/null
./configure \
--prefix=$HYPRE_ARCH_PATH \
--prefix="$HYPRE_ARCH_PATH" \
--disable-fortran \
--enable-shared \
$configOpt \

126
makePETSC
View File

@ -20,35 +20,7 @@
# ----------------------------------------------
# NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
#------------------------------------------------------------------------------
# Dynamic library ending (default is .so)
[ "$(uname -s)" = Darwin ] && EXT_SO=.dylib || EXT_SO=.so
# Short-circuit test for an installation
if [ "$1" = "-test" ]
then
[ "$#" -eq 2 ] || { echo "${0##*/} -test : needs 1 argument"; exit 1; }
dir="${2%/}" # <- *_ARCH_PATH
if [ -d "$dir/include" ]
then
for lib in \
$FOAM_EXT_LIBBIN/libpetsc$EXT_SO \
$dir/lib/libpetsc.a \
$dir/lib/libpetsc$EXT_SO \
$dir/lib$WM_COMPILER_LIB_ARCH/libpetsc.a \
$dir/lib$WM_COMPILER_LIB_ARCH/libpetsc$EXT_SO \
;
do
if [ -r "$lib" ]
then
echo " petsc include: $dir/include"
echo " petsc library: ${lib%/*}"
exit 0
fi
done
fi
exit 2
fi
#------------------------------------------------------------------------------
# Run from third-party directory only
cd "${0%/*}" || exit
wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
@ -56,38 +28,44 @@ wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
echo " Check your OpenFOAM environment and installation"
exit 1
}
[ -n "$FOAM_EXT_LIBBIN" ] || {
echo "Error (${0##*/}) : \$FOAM_EXT_LIBBIN not set"
echo " Check your OpenFOAM environment and installation"
exit 1
}
. etc/tools/ThirdPartyFunctions
#------------------------------------------------------------------------------
_foamConfig hypre
_foamConfig petsc
petscPACKAGE=${petsc_version:-petsc-system}
hyprePACKAGE="${hypre_version:-hypre-none}"
petscPACKAGE="${petsc_version:-petsc-system}"
targetType=libso
# Should be possible to build with download, but seems to fail
# hypreURL="https://github.com/hypre-space/hypre/archive/v2.14.0.tar.gz"
unset hypreURL
#------------------------------------------------------------------------------
usage() {
exec 1>&2
while [ "$#" -ge 1 ]; do echo "$1"; shift; done
cat<<USAGE
usage: ${0##*/} [OPTION] [lib|libso] [PETSC-VERSION]
usage: ${0##*/} [OPTION] [lib|libso] [HYPRE-VERSION] [PETSC-VERSION] [-- configure-options]
options:
-gcc Force use of gcc/g++
-inplace Build/install inplace (expert option)
-no-hype Disable automatic hypre detection
-help
* build PETSC with
${petscPACKAGE:-'unspecified petsc version'}
USAGE
showDownloadHint PETSC
exit 1
}
#------------------------------------------------------------------------------
exportCompiler # Compiler info for CMake/configure
unset optInplace
# Parse options
while [ "$#" -gt 0 ]
do
@ -96,10 +74,24 @@ do
-h | -help) usage ;;
-gcc) useGcc ;;
-inplace)
optInplace=true
;;
lib|libso)
targetType="$1"
;;
-no-hypre)
unset hyprePACKAGE hypreURL
unset HYPRE_ARCH_PATH
;;
hypre-[0-9]* | hypre-git)
hyprePACKAGE="${1%%/}"
unset hypreURL
unset HYPRE_ARCH_PATH # Avoid inconsistency
;;
petsc-[0-9]* | petsc-git)
petscPACKAGE="${1%%/}"
unset PETSC_ARCH_PATH # Avoid inconsistency
@ -124,6 +116,20 @@ then
exit 0
fi
#------------------------------------------------------------------------------
# Integrations
# No hypre
if _foamIsNone "$hyprePACKAGE"
then
:
elif [ -n "$hyprePACKAGE" ]
then
# Clunky
: "${HYPRE_ARCH_PATH:=$installBASE$WM_SIZE_OPTIONS/$hyprePACKAGE}"
fi
#------------------------------------------------------------------------------
#
# Build PETSC
@ -141,15 +147,47 @@ PETSC_SOURCE_DIR="$sourceBASE/$petscPACKAGE"
}
# PETSC arch - same root as WM_OPTIONS (eg, DPInt32)
archOpt="$WM_SIZE_OPTIONS"
if [ -n "$optInplace" ]
then
unset installPrefix
# No install stage requires
makeInstall() { true; }
else
# Regular installation location
installPrefix="$PETSC_ARCH_PATH"
makeInstall() {
make PETSC_DIR="$PETSC_SOURCE_DIR" PETSC_ARCH="$archOpt" install
}
fi
echo "Starting build: $petscPACKAGE ($targetType)"
echo
(
# PETSC arch - same root as WM_OPTIONS (eg, DPInt32)
archOpt="$WM_SIZE_OPTIONS"
# Configuration options
configOpt="--with-cc=$(whichMpicc) --with-cxx=$(whichMpicxx)"
# Normally want hypre but this is really clunky
if [ -f "$HYPRE_ARCH_PATH/include/HYPRE.h" ]
then
echo "Has installed hypre: $hyprePACKAGE"
configOpt="$configOpt --with-hypre-dir=$HYPRE_ARCH_PATH"
elif [ -n "$urlHypre" ]
then
configOpt="$configOpt --download-hypre=$urlHypre"
fi
# Additional configure options
if [ "$1" = "--" ]
then
shift
configOpt="$configOpt $@"
fi
if [ "$targetType" = libso ]
then
configOpt="$configOpt --with-shared-libraries"
@ -179,25 +217,29 @@ echo
export GIT_DIR="$PWD/.git" # Mask seeing our own git-repo
rm -rf "$PETSC_ARCH_PATH"
# No clean here, if we have multiple arch in the same directory
## without tests? --testdir=..
## configOpt="$configOpt --download-f2cblaslapack=1"
set -x
./configure \
--prefix="$PETSC_ARCH_PATH" \
${installPrefix:+--prefix="$installPrefix"} \
--PETSC_DIR="$PETSC_SOURCE_DIR" \
--with-petsc-arch="$archOpt" \
--with-clanguage=C \
--with-fc=0 \
--with-scalapack=0 \
--with-superlu_dist=0 \
--with-suitesparse=0 \
--download-f2cblaslapack=1 \
--with-x=0 \
$configOpt \
&& set +x \
&& echo "Configured: petsc" \
&& make PETSC_DIR="$PETSC_SOURCE_DIR" PETSC_ARCH="$archOpt" all \
&& make ${WM_NCOMPPROCS:+-j $WM_NCOMPPROCS} \
PETSC_DIR="$PETSC_SOURCE_DIR" PETSC_ARCH="$archOpt" all \
&& echo "Built: petsc" \
&& make PETSC_DIR="$PETSC_SOURCE_DIR" PETSC_ARCH="$archOpt" install \
&& makeInstall \
&& echo "Installed: petsc - may require etc/pkgconfigPrefix to relocate"
) || {
echo "Error building: petsc"