ENH: ensure adios_config information reflects installation and is moveable

makeADIOS

@@ -53,6 +53,7 @@ usage() {
 
 usage: ${0##*/} [OPTION] [adios-VERSION]
 options:
+  -cmake PATH       With cmake from the path given
   -gcc              Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
   -help
 
@@ -80,7 +81,12 @@ do
         export CC=gcc    # use gcc/g++
         export CXX=g++
         ;;
-    ADIOS-[1-9]* | adios-[1-9]* | ADIOS-git | adios-git)
+    -cmake)
+        [ "$#" -ge 2 ] || die "'$1' option requires an argument"
+        CMAKE_PATH="${2%%/}"
+        shift
+        ;;
+    ADIOS-[1-9]* | adios-[1-9]* | ADIOS-git* | adios-git*)
         adiosPACKAGE="${1%%/}"
         ;;
     *)
@@ -119,6 +125,115 @@ echo ========================================
 echo "Build adios library $adiosPACKAGE for $FOAM_MPI"
 echo
 
+
+#
+# Manual adjustments to adios config
+#
+adjustADIOS()
+{
+    # Rename libraries according to FOAM_MPI
+    (
+        cd $ADIOS_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH || exit 1
+
+        if [ "$FOAM_MPI" != dummy ]
+        then
+            \mv -f libadios.a       libadios_$FOAM_MPI.a
+            \mv -f libadiosread.a   libadiosread_$FOAM_MPI.a
+        fi
+        \mv -f libadios_nompi.a     libadios_dummy.a
+        \mv -f libadiosread_nompi.a libadiosread_dummy.a
+
+        echo
+        echo "ADIOS library renamed to libadios_$FOAM_MPI"
+        echo
+    )
+
+    # We don't need/use XML things
+    \rm -f $ADIOS_ARCH_PATH/bin/adios_lint
+
+    # Replace resolved paths with variables
+    echo "Adjust prefix for ADIOS"
+    for i in \
+        $ADIOS_ARCH_PATH/bin/adios_config \
+        $ADIOS_ARCH_PATH/etc/adios_config.flags \
+    ;
+    do
+        [ -f "$i" ] || {
+            echo "    no such file - '$i'"
+            continue
+        }
+        if sed -i -e 's|'"$WM_THIRD_PARTY_DIR"'|$WM_THIRD_PARTY_DIR|g' $i
+        then
+            echo "    '$i'"
+        else
+            echo "    problems with '$i'"
+        fi
+    done
+
+    # Adjust the config flags file:
+    # * Remove references to Fortran libraries (disabled in configure)
+    # * Remove references to deprecated version 1 API
+    # * Cleanup excessive whitespace
+    # * Handle renamed libraries:
+    #   - libadios       -> libadios_$FOAM_MPI
+    #   - libadios_nompi -> libadios_dummy
+    #
+    echo "Adjust library names for ADIOS"
+    for i in \
+        $ADIOS_ARCH_PATH/etc/adios_config.flags \
+    ;
+    do
+        [ -f "$i" ] || {
+            echo "    no such file - '$i'"
+            continue
+        }
+
+        if sed -i \
+            -e '/_FLIB=/d' \
+            -e '/_V1_INC=/d' \
+            -e 's|  *| |g' \
+            -e 's|\(-ladios[a-z]*_\)nompi |\1dummy |g' \
+            $i
+        then
+            echo "    '$i'"
+        else
+            echo "    problems with '$i'"
+        fi
+
+        if [ "$FOAM_MPI" != dummy ]
+        then
+            sed -i -e 's|\(-ladios[a-z]*\) |\1_'"$FOAM_MPI |g" $i || \
+            echo "    problems with '$i'"
+        fi
+    done
+}
+
+#
+# List ADIOS methods/configuration
+#
+listMethods()
+{
+    [ -f $ADIOS_ARCH_PATH/bin/adios_config ] || {
+        echo "Warning: no adios_config"
+        return 1
+    }
+
+    echo "==============="
+
+    # May have problems listing parallel methods (eg, transport key missing)
+    if $ADIOS_ARCH_PATH/bin/adios_config -m >/dev/null 2>&1
+    then
+        $ADIOS_ARCH_PATH/bin/adios_config -m 2>/dev/null
+    else
+        echo "Warning: could not list parallel methods"
+        # Fallback to serial methods
+        $ADIOS_ARCH_PATH/bin/adios_config -s -m 2>/dev/null
+    fi || echo "Warning: could not list configured methods"
+    echo "==============="
+
+}
+
+
 # Needs future adjustment
 # - for shared library
 # - for mpi-specific library locations
@@ -128,15 +243,18 @@ then
     echo "    ADIOS header in $ADIOS_ARCH_PATH/include"
     ### echo "    ADIOS libs   in $FOAM_EXT_LIBBIN"           # dynamic
     echo "    ADIOS libs   in $ADIOS_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH" # static
+    listMethods
+elif [ -z "$CMAKE_PATH" ]
+then
+    echo "Starting build: $adiosPACKAGE (using configure)"
     echo
-else
+    (
-(
         # configuration options:
         unset configOpt
 
         # Add InfiniBand support
         ibDir=/usr/local/ofed
-    if [ -d "$ibDir" ]
+        if [ -d "$ibDir" -a "$FOAM_MPI" != dummy ]
         then
             configOpt="$configOpt --with-infiniband=$ibDir"
         fi
@@ -144,18 +262,18 @@ else
         # Transport layers
         if [ -f "/usr/include/bzlib.h" ]
         then
-        configOpt="$configOpt --with-bzip2=/usr"
+            configOpt="$configOpt --with-bzip2"
         fi
 
         if [ -f "/usr/include/zlib.h" ]
         then
-        configOpt="$configOpt --with-zlib=/usr"
+            configOpt="$configOpt --with-zlib"
         fi
 
         # Other types of support
         ## $configOpt="$configOpt --with-hdf5=..."
         ## $configOpt="$configOpt --with-lustre=..."
-    configOpt="$configOpt --enable-research-transports"
+        ## configOpt="$configOpt --enable-research-transports"
 
         # end of configuration options
         # ----------------------------
@@ -196,30 +314,51 @@ else
         && make -j $WM_NCOMPPROCS all \
         && make install \
         && echo "Built: $adiosPACKAGE" \
-    && cd $ADIOS_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH && \
+        && adjustADIOS \
-    {
+        && listMethods
-        # Rename according to FOAM_MPI
+    ) || {
-        if [ "$FOAM_MPI" != dummy ]
-        then
-            \mv -f libadios.a       libadios_$FOAM_MPI.a
-            \mv -f libadiosread.a   libadiosread_$FOAM_MPI.a
-        fi
-        \mv -f libadios_nompi.a     libadios_dummy.a
-        \mv -f libadiosread_nompi.a libadiosread_dummy.a
-
-        echo
-        echo "ADIOS library renamed to libadios_$FOAM_MPI"
-        echo
-    } && cd $ADIOS_ARCH_PATH/bin && \
-    {
-        # We don't need/use XML things
-        \rm -f adios_lint
-        $ADIOS_ARCH_PATH/bin/adios_config -m 2>/dev/null || \
-            echo "Warning: Problems running adios_config"
-    }
-) || {
         echo "Error building: $adiosPACKAGE"
-}
+    }
+else
+    # CMake options often lag the configure ones
+    echo "Starting build: $adiosPACKAGE (using cmake)"
+    echo
+    (
+        buildDIR=$buildBASE/$adiosPACKAGE
+        cd $ADIOS_SOURCE_DIR || exit 1
+
+        export GIT_DIR=$ADIOS_SOURCE_DIR/.git
+
+        # Remove any existing build folder and recreate
+        rm -rf $ADIOS_ARCH_DIR
+        rm -rf $buildDIR 2>/dev/null
+        mkdir -p $buildDIR
+
+        # May not work properly with FOAM_MPI = dummy
+        if [ "$FOAM_MPI" = dummy ]
+        then
+            configOpt="$configOpt --without-mpi"
+        else
+            CC=mpicc
+            CXX=mpicxx
+        fi
+
+        cmake=$(findCMake)
+
+        # Install into lib64/
+        cd $buildDIR && $cmake \
+            -DCMAKE_INSTALL_PREFIX=$ADIOS_ARCH_PATH \
+            -DCMAKE_BUILD_TYPE=Release \
+            -DBUILD_FORTRAN:BOOL=FALSE \
+            $ADIOS_SOURCE_DIR \
+        && make -j $WM_NCOMPPROCS all \
+        && make install \
+        && echo "Built: $adiosPACKAGE" \
+        && adjustADIOS \
+        && listMethods
+    ) || {
+        echo "Error building: $adiosPACKAGE"
+    }
 fi
 
 # ----------------------------------------------------------------- end-of-file