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ENH: improve handling of finiteArea mesh with distributed roots
- in makeFaMesh, the serial fields are now only read on the master process and broadcast to the other ranks. The read+distribute is almost identical to that used in redistributePar, except that in this case entire fields are sent and not a zero-sized subset. - improved internal faMesh checking for files so that the TryNew method works with distributed roots.
This commit is contained in:
@ -95,7 +95,8 @@ int main(int argc, char *argv[])
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Info<< "Time = " << runTime.timeName() << nl << endl;
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Info<< "Time = " << runTime.timeName() << nl << endl;
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#include "printMeshSummary.H"
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// Mesh information (verbose)
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faMeshTools::printMeshChecks(aMesh);
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if (args.found("write-vtk"))
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if (args.found("write-vtk"))
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{
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{
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@ -30,44 +30,63 @@ do
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break;
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break;
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}
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}
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reconstructor.writeAddressing();
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reconstructor.writeMesh(); // Writes on master only
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reconstructor.writeAddressing(); // Writes per-proc
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Info<< "Wrote proc-addressing" << nl << endl;
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Info<< "Wrote proc-addressing and serial mesh" << nl << endl;
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// Handle area fields
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// Handle area fields
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// ------------------
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// ------------------
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faFieldDecomposer::fieldsCache areaFieldsCache;
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faFieldDecomposer::fieldsCache areaFieldsCache;
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const faMesh& fullMesh = reconstructor.mesh();
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const faMesh& serialMesh = reconstructor.mesh();
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if (doDecompFields)
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{
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{
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// Use uncollated (or master uncollated) file handler here.
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// The serial finite-area mesh exists and is identical on all
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// - each processor is reading in the identical serial fields.
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// processors, but its fields can only reliably be read on the
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// - nothing should be parallel-coordinated.
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// master (eg, running with distributed roots).
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//
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// - mark mesh fields as readable on master only (haveMeshOnProc)
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// - 'subset' entire serial mesh so that a full copy will be
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// broadcast to other ranks (subsetterPtr)
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// - scan available IOobjects on the master only
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// Similarly, if we write the serial finite-area mesh, this is only
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bitSet haveMeshOnProc;
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// done from one processor!
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std::unique_ptr<faMeshSubset> subsetter;
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IOobjectList objects(0);
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reconstructor.writeMesh();
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const bool oldDistributed = fileHandler().distributed();
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auto oldHandler = fileHandler(fileOperation::NewUncollated());
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fileHandler().distributed(true);
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if (doDecompFields)
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if (Pstream::master())
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{
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{
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const bool oldDistributed = fileHandler().distributed();
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haveMeshOnProc.set(Pstream::myProcNo());
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auto oldHandler = fileHandler(fileOperation::NewUncollated());
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subsetter.reset(new faMeshSubset(serialMesh));
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fileHandler().distributed(true);
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IOobjectList objects(fullMesh.time(), runTime.timeName());
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const bool oldParRun = Pstream::parRun(false);
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areaFieldsCache.readAllFields(fullMesh, objects);
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objects = IOobjectList(serialMesh.time(), runTime.timeName());
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// Restore old settings
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Pstream::parRun(oldParRun);
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if (oldHandler)
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{
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fileHandler(std::move(oldHandler));
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}
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fileHandler().distributed(oldDistributed);
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}
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}
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// Restore old settings
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if (oldHandler)
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{
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fileHandler(std::move(oldHandler));
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}
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fileHandler().distributed(oldDistributed);
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areaFieldsCache.readAllFields
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(
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haveMeshOnProc,
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subsetter.get(),
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serialMesh,
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objects
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);
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}
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}
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const label nAreaFields = areaFieldsCache.size();
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const label nAreaFields = areaFieldsCache.size();
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@ -78,7 +97,7 @@ do
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faFieldDecomposer fieldDecomposer
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faFieldDecomposer fieldDecomposer
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(
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(
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fullMesh,
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serialMesh,
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aMesh,
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aMesh,
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reconstructor.edgeProcAddressing(),
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reconstructor.edgeProcAddressing(),
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reconstructor.faceProcAddressing(),
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reconstructor.faceProcAddressing(),
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@ -6,7 +6,7 @@
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\\/ M anipulation |
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\\/ M anipulation |
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-------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
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Copyright (C) 2016-2017 Wikki Ltd
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Copyright (C) 2016-2017 Wikki Ltd
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Copyright (C) 2021 OpenCFD Ltd.
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Copyright (C) 2021-2022 OpenCFD Ltd.
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-------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
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License
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License
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This file is part of OpenFOAM.
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This file is part of OpenFOAM.
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@ -42,13 +42,14 @@ Original Authors
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#include "argList.H"
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#include "argList.H"
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#include "OSspecific.H"
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#include "OSspecific.H"
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#include "faMesh.H"
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#include "faMesh.H"
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#include "faMeshTools.H"
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#include "IOdictionary.H"
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#include "IOdictionary.H"
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#include "IOobjectList.H"
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#include "IOobjectList.H"
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#include "areaFields.H"
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#include "areaFields.H"
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#include "edgeFields.H"
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#include "edgeFields.H"
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#include "faFieldDecomposer.H"
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#include "faFieldDecomposer.H"
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#include "faMeshReconstructor.H"
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#include "faMeshReconstructor.H"
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#include "faMeshSubset.H"
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#include "PtrListOps.H"
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#include "PtrListOps.H"
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#include "foamVtkIndPatchWriter.H"
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#include "foamVtkIndPatchWriter.H"
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#include "OBJstream.H"
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#include "OBJstream.H"
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@ -131,8 +132,8 @@ int main(int argc, char *argv[])
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// Create
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// Create
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faMesh aMesh(mesh, meshDefDict);
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faMesh aMesh(mesh, meshDefDict);
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// Mesh information
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// Mesh information (less verbose)
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#include "printMeshSummary.H"
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faMeshTools::printMeshChecks(aMesh, 0);
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if (args.found("write-edges-obj"))
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if (args.found("write-edges-obj"))
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{
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{
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@ -1,104 +0,0 @@
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/*---------------------------------------------------------------------------*\
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========= |
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\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
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\\ / O peration |
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\\ / A nd | www.openfoam.com
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\\/ M anipulation |
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-------------------------------------------------------------------------------
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Copyright (C) 2021-2022 OpenCFD Ltd.
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-------------------------------------------------------------------------------
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License
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This file is part of OpenFOAM, distributed under GPL-3.0-or-later.
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Description
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Summary of faMesh information
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\*---------------------------------------------------------------------------*/
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{
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const faBoundaryMesh& patches = aMesh.boundary();
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const label nNonProcessor = patches.nNonProcessor();
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const label nPatches = patches.size();
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Info<< "----------------" << nl
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<< "Mesh Information" << nl
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<< "----------------" << nl
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<< " " << "boundingBox: " << boundBox(aMesh.points()) << nl
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<< " " << "nFaces: " << returnReduce(aMesh.nFaces(), sumOp<label>())
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<< nl;
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Info<< "----------------" << nl
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<< "Patches" << nl
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<< "----------------" << nl;
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for (label patchi = 0; patchi < nNonProcessor; ++patchi)
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{
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const faPatch& p = patches[patchi];
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// Report physical size (nEdges) not virtual size
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Info<< " " << "patch " << p.index()
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<< " (size: " << returnReduce(p.nEdges(), sumOp<label>())
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<< ") name: " << p.name()
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<< nl;
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}
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Info<< "----------------" << nl
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<< "Used polyPatches: " << flatOutput(aMesh.whichPolyPatches()) << nl;
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// Geometry information
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Info<< nl;
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{
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scalarMinMax limit(gMinMax(aMesh.S().field()));
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Info<< "Face area:" << nl
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<< " min = " << limit.min() << " max = " << limit.max() << nl;
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}
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{
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scalarMinMax limit(minMax(aMesh.magLe().primitiveField()));
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// Include processor boundaries into 'internal' edges
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if (Pstream::parRun())
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{
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for (label patchi = nNonProcessor; patchi < nPatches; ++patchi)
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{
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limit.add(minMax(aMesh.magLe().boundaryField()[patchi]));
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}
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reduce(limit, minMaxOp<scalar>());
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}
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Info<< "Edge length (internal):" << nl
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<< " min = " << limit.min() << " max = " << limit.max() << nl;
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// Include (non-processor) boundaries
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for (label patchi = 0; patchi < nNonProcessor; ++patchi)
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{
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limit.add(minMax(aMesh.magLe().boundaryField()[patchi]));
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}
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if (Pstream::parRun())
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{
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reduce(limit, minMaxOp<scalar>());
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}
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Info<< "Edge length:" << nl
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<< " min = " << limit.min()
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<< " max = " << limit.max() << nl;
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}
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// Not particularly meaningful
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#if 0
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{
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MinMax<vector> limit(gMinMax(aMesh.faceAreaNormals().field()));
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Info<< "Face area normals:" << nl
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<< " min = " << limit.min() << " max = " << limit.max() << nl;
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}
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#endif
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}
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// ************************************************************************* //
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@ -38,6 +38,7 @@ SourceFiles
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#define Foam_fieldsDistributor_H
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#define Foam_fieldsDistributor_H
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#include "IOobjectList.H"
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#include "IOobjectList.H"
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#include "bitSet.H"
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#include "boolList.H"
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#include "boolList.H"
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#include "PtrList.H"
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#include "PtrList.H"
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#include "GeometricField.H"
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#include "GeometricField.H"
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@ -53,6 +54,22 @@ namespace Foam
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class fieldsDistributor
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class fieldsDistributor
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{
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{
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// Private Methods
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//- Read volume/surface/point/area fields that may or may not exist
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//- on all processors
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template<class BoolListType, class GeoField, class MeshSubsetter>
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static void readFieldsImpl
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(
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const BoolListType& haveMeshOnProc,
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const MeshSubsetter* subsetter,
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const typename GeoField::Mesh& mesh,
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IOobjectList& allObjects,
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PtrList<GeoField>& fields,
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const bool deregister
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);
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public:
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public:
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// Reading helpers
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// Reading helpers
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@ -103,6 +120,32 @@ public:
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);
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);
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//- Read volume/surface/point/area fields that may or may not exist
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//- on all processors
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template<class GeoField, class MeshSubsetter>
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static void readFields
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(
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const bitSet& haveMeshOnProc,
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const MeshSubsetter* subsetter,
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const typename GeoField::Mesh& mesh,
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IOobjectList& allObjects,
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PtrList<GeoField>& fields,
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const bool deregister = false
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);
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//- Read volume/surface/point/area fields that may or may not exist
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//- on all processors
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template<class GeoField, class MeshSubsetter>
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static void readFields
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(
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const boolList& haveMeshOnProc,
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const MeshSubsetter* subsetter,
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const typename GeoField::Mesh& mesh,
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IOobjectList& allObjects,
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PtrList<GeoField>& fields,
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const bool deregister = false
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);
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//- Read volume/surface/point/area fields that may or may not exist
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//- Read volume/surface/point/area fields that may or may not exist
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//- on all processors
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//- on all processors
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template<class GeoField, class MeshSubsetter>
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template<class GeoField, class MeshSubsetter>
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@ -110,7 +153,7 @@ public:
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(
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(
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const boolList& haveMeshOnProc,
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const boolList& haveMeshOnProc,
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const typename GeoField::Mesh& mesh,
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const typename GeoField::Mesh& mesh,
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const autoPtr<MeshSubsetter>& subsetterPtr,
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const autoPtr<MeshSubsetter>& subsetter,
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IOobjectList& allObjects,
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IOobjectList& allObjects,
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PtrList<GeoField>& fields,
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PtrList<GeoField>& fields,
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const bool deregister = false
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const bool deregister = false
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@ -101,12 +101,12 @@ void Foam::fieldsDistributor::readFields
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}
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}
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template<class GeoField, class MeshSubsetter>
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template<class BoolListType, class GeoField, class MeshSubsetter>
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void Foam::fieldsDistributor::readFields
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void Foam::fieldsDistributor::readFieldsImpl
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(
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(
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const boolList& haveMeshOnProc,
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const BoolListType& haveMeshOnProc,
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const MeshSubsetter* subsetter,
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const typename GeoField::Mesh& mesh,
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const typename GeoField::Mesh& mesh,
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const autoPtr<MeshSubsetter>& subsetterPtr,
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IOobjectList& allObjects,
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IOobjectList& allObjects,
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PtrList<GeoField>& fields,
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PtrList<GeoField>& fields,
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const bool deregister
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const bool deregister
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@ -122,7 +122,7 @@ void Foam::fieldsDistributor::readFields
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wordList masterNames(objectNames);
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wordList masterNames(objectNames);
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Pstream::broadcast(masterNames);
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Pstream::broadcast(masterNames);
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if (haveMeshOnProc[Pstream::myProcNo()] && objectNames != masterNames)
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if (haveMeshOnProc.test(Pstream::myProcNo()) && objectNames != masterNames)
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{
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{
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FatalErrorInFunction
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FatalErrorInFunction
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<< "Objects not synchronised across processors." << nl
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<< "Objects not synchronised across processors." << nl
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@ -173,9 +173,10 @@ void Foam::fieldsDistributor::readFields
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bool decompose = true;
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bool decompose = true;
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for (const int proci : Pstream::subProcs())
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for (const int proci : Pstream::subProcs())
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{
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{
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if (haveMeshOnProc[proci])
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if (haveMeshOnProc.test(proci))
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{
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{
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decompose = false;
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decompose = false;
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break;
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}
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}
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}
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}
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@ -197,7 +198,7 @@ void Foam::fieldsDistributor::readFields
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|
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Pstream::parRun(oldParRun); // Restore any changes
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Pstream::parRun(oldParRun); // Restore any changes
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}
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}
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else if (haveMeshOnProc[Pstream::myProcNo()])
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else if (haveMeshOnProc.test(Pstream::myProcNo()))
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{
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{
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// Have mesh so just try to load
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// Have mesh so just try to load
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forAll(masterNames, i)
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forAll(masterNames, i)
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@ -226,20 +227,18 @@ void Foam::fieldsDistributor::readFields
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OPBstream toProcs(UPstream::masterNo()); // worldComm
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OPBstream toProcs(UPstream::masterNo()); // worldComm
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const label nDicts = (subsetterPtr ? fields.size() : label(0));
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const label nDicts = (subsetter ? fields.size() : label(0));
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toProcs << nDicts << token::BEGIN_LIST; // Begin list
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toProcs << nDicts << token::BEGIN_LIST; // Begin list
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|
|
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if (nDicts)
|
if (nDicts && subsetter)
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{
|
{
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// Disable communication for interpolate() method
|
// Disable communication for interpolate() method
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const bool oldParRun = Pstream::parRun(false);
|
const bool oldParRun = Pstream::parRun(false);
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|
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const auto& subsetter = subsetterPtr();
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for (const auto& fld : fields)
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||||||
|
|
||||||
forAll(fields, i)
|
|
||||||
{
|
{
|
||||||
tmp<GeoField> tsubfld = subsetter.interpolate(fields[i]);
|
tmp<GeoField> tsubfld = subsetter->interpolate(fld);
|
||||||
|
|
||||||
// Surround each with {} as dictionary entry
|
// Surround each with {} as dictionary entry
|
||||||
toProcs.beginBlock();
|
toProcs.beginBlock();
|
||||||
@ -258,15 +257,14 @@ void Foam::fieldsDistributor::readFields
|
|||||||
IPBstream fromMaster(UPstream::masterNo()); // worldComm
|
IPBstream fromMaster(UPstream::masterNo()); // worldComm
|
||||||
|
|
||||||
// But only consume where needed...
|
// But only consume where needed...
|
||||||
if (!haveMeshOnProc[Pstream::myProcNo()])
|
if (!haveMeshOnProc.test(Pstream::myProcNo()))
|
||||||
{
|
{
|
||||||
fromMaster >> fieldDicts;
|
fromMaster >> fieldDicts;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
// Use the received dictionaries to create fields
|
// Use the received dictionaries (if any) to create missing fields.
|
||||||
// (will be empty if we didn't require them)
|
|
||||||
|
|
||||||
// Disable communication when constructing from dictionary
|
// Disable communication when constructing from dictionary
|
||||||
const bool oldParRun = Pstream::parRun(false);
|
const bool oldParRun = Pstream::parRun(false);
|
||||||
@ -327,4 +325,76 @@ void Foam::fieldsDistributor::readFields
|
|||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
|
template<class GeoField, class MeshSubsetter>
|
||||||
|
void Foam::fieldsDistributor::readFields
|
||||||
|
(
|
||||||
|
const bitSet& haveMeshOnProc,
|
||||||
|
const MeshSubsetter* subsetter,
|
||||||
|
const typename GeoField::Mesh& mesh,
|
||||||
|
IOobjectList& allObjects,
|
||||||
|
PtrList<GeoField>& fields,
|
||||||
|
const bool deregister
|
||||||
|
)
|
||||||
|
{
|
||||||
|
readFieldsImpl
|
||||||
|
(
|
||||||
|
haveMeshOnProc,
|
||||||
|
subsetter,
|
||||||
|
|
||||||
|
mesh,
|
||||||
|
allObjects,
|
||||||
|
fields,
|
||||||
|
deregister
|
||||||
|
);
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
template<class GeoField, class MeshSubsetter>
|
||||||
|
void Foam::fieldsDistributor::readFields
|
||||||
|
(
|
||||||
|
const boolList& haveMeshOnProc,
|
||||||
|
const MeshSubsetter* subsetter,
|
||||||
|
const typename GeoField::Mesh& mesh,
|
||||||
|
IOobjectList& allObjects,
|
||||||
|
PtrList<GeoField>& fields,
|
||||||
|
const bool deregister
|
||||||
|
)
|
||||||
|
{
|
||||||
|
readFieldsImpl
|
||||||
|
(
|
||||||
|
haveMeshOnProc,
|
||||||
|
subsetter,
|
||||||
|
|
||||||
|
mesh,
|
||||||
|
allObjects,
|
||||||
|
fields,
|
||||||
|
deregister
|
||||||
|
);
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
template<class GeoField, class MeshSubsetter>
|
||||||
|
void Foam::fieldsDistributor::readFields
|
||||||
|
(
|
||||||
|
const boolList& haveMeshOnProc,
|
||||||
|
const typename GeoField::Mesh& mesh,
|
||||||
|
const autoPtr<MeshSubsetter>& subsetter,
|
||||||
|
IOobjectList& allObjects,
|
||||||
|
PtrList<GeoField>& fields,
|
||||||
|
const bool deregister
|
||||||
|
)
|
||||||
|
{
|
||||||
|
readFieldsImpl
|
||||||
|
(
|
||||||
|
haveMeshOnProc,
|
||||||
|
subsetter.get(),
|
||||||
|
|
||||||
|
mesh,
|
||||||
|
allObjects,
|
||||||
|
fields,
|
||||||
|
deregister
|
||||||
|
);
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
// ************************************************************************* //
|
// ************************************************************************* //
|
||||||
|
|||||||
@ -11,6 +11,7 @@ faMesh/faBoundaryMesh/faBoundaryMeshEntries.C
|
|||||||
|
|
||||||
faMesh/faMeshSubset/faMeshSubset.C
|
faMesh/faMeshSubset/faMeshSubset.C
|
||||||
faMesh/faMeshTools/faMeshTools.C
|
faMesh/faMeshTools/faMeshTools.C
|
||||||
|
faMesh/faMeshTools/faMeshToolsChecks.C
|
||||||
faMesh/faMeshTools/faMeshToolsProcAddr.C
|
faMesh/faMeshTools/faMeshToolsProcAddr.C
|
||||||
|
|
||||||
faPatches = faMesh/faPatches
|
faPatches = faMesh/faPatches
|
||||||
|
|||||||
@ -978,7 +978,7 @@ bool Foam::faMesh::movePoints()
|
|||||||
mesh(),
|
mesh(),
|
||||||
IOobject::NO_READ,
|
IOobject::NO_READ,
|
||||||
IOobject::NO_WRITE,
|
IOobject::NO_WRITE,
|
||||||
false
|
IOobject::NO_REGISTER
|
||||||
),
|
),
|
||||||
S()
|
S()
|
||||||
);
|
);
|
||||||
|
|||||||
@ -64,7 +64,7 @@ bool Foam::faMesh::hasSystemFiles(const polyMesh& pMesh)
|
|||||||
pMesh,
|
pMesh,
|
||||||
IOobject::MUST_READ,
|
IOobject::MUST_READ,
|
||||||
IOobject::NO_WRITE,
|
IOobject::NO_WRITE,
|
||||||
false
|
IOobject::NO_REGISTER
|
||||||
),
|
),
|
||||||
expect // typeName (ununsed?)
|
expect // typeName (ununsed?)
|
||||||
)
|
)
|
||||||
@ -76,6 +76,7 @@ bool Foam::faMesh::hasSystemFiles(const polyMesh& pMesh)
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
// Only needed on master
|
||||||
Pstream::broadcast(looksValid);
|
Pstream::broadcast(looksValid);
|
||||||
|
|
||||||
return looksValid;
|
return looksValid;
|
||||||
@ -87,8 +88,8 @@ bool Foam::faMesh::hasFiles(const polyMesh& pMesh)
|
|||||||
// As well as system/{faSchemes,faSolution}
|
// As well as system/{faSchemes,faSolution}
|
||||||
//
|
//
|
||||||
// expect these:
|
// expect these:
|
||||||
// - timeValue/faMesh/faBoundary
|
// - instance/faMesh/faceLabels
|
||||||
// - timeValue/instance/faMesh/faceLabels
|
// - instance/faMesh/faBoundary
|
||||||
|
|
||||||
bool looksValid = hasSystemFiles(pMesh);
|
bool looksValid = hasSystemFiles(pMesh);
|
||||||
|
|
||||||
@ -96,15 +97,23 @@ bool Foam::faMesh::hasFiles(const polyMesh& pMesh)
|
|||||||
{
|
{
|
||||||
const fileOperation& fp = Foam::fileHandler();
|
const fileOperation& fp = Foam::fileHandler();
|
||||||
|
|
||||||
fileName subDir(pMesh.dbDir()/faMesh::meshSubDir);
|
// The geometry instance for faMesh/faceLabels
|
||||||
|
// Must use READ_IF_PRESENT to avoid aborting if not available
|
||||||
|
|
||||||
|
const word instance = pMesh.time().findInstance
|
||||||
|
(
|
||||||
|
pMesh.dbDir()/faMesh::meshSubDir,
|
||||||
|
"faceLabels",
|
||||||
|
IOobject::READ_IF_PRESENT
|
||||||
|
);
|
||||||
|
|
||||||
for
|
for
|
||||||
(
|
(
|
||||||
const wordPair& expect
|
const wordPair& expect
|
||||||
: List<wordPair>
|
: List<wordPair>
|
||||||
({
|
({
|
||||||
{"faBoundary", "faBoundaryMesh"},
|
{"faceLabels", "labelList"},
|
||||||
{"faceLabels", "labelList"}
|
{"faBoundary", "faBoundaryMesh"}
|
||||||
})
|
})
|
||||||
)
|
)
|
||||||
{
|
{
|
||||||
@ -115,18 +124,18 @@ bool Foam::faMesh::hasFiles(const polyMesh& pMesh)
|
|||||||
(
|
(
|
||||||
fp.filePath
|
fp.filePath
|
||||||
(
|
(
|
||||||
false, // non-global
|
false, // non-global
|
||||||
IOobject
|
IOobject
|
||||||
(
|
(
|
||||||
dataFile,
|
dataFile,
|
||||||
pMesh.time().findInstance(subDir, dataFile),
|
instance,
|
||||||
faMesh::meshSubDir,
|
faMesh::meshSubDir,
|
||||||
pMesh,
|
pMesh,
|
||||||
IOobject::MUST_READ,
|
IOobject::READ_IF_PRESENT,
|
||||||
IOobject::NO_WRITE,
|
IOobject::NO_WRITE,
|
||||||
false
|
IOobject::NO_REGISTER
|
||||||
),
|
),
|
||||||
dataClass // typeName (ununsed?)
|
dataClass // typeName (ununsed?)
|
||||||
)
|
)
|
||||||
);
|
);
|
||||||
|
|
||||||
@ -136,7 +145,8 @@ bool Foam::faMesh::hasFiles(const polyMesh& pMesh)
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
Pstream::broadcast(looksValid);
|
// Everybody needs it, or they all fail
|
||||||
|
Pstream::reduceAnd(looksValid);
|
||||||
}
|
}
|
||||||
|
|
||||||
return looksValid;
|
return looksValid;
|
||||||
|
|||||||
@ -109,7 +109,7 @@ Foam::autoPtr<Foam::faMesh> Foam::faMeshTools::newMesh
|
|||||||
io.db(),
|
io.db(),
|
||||||
IOobject::MUST_READ,
|
IOobject::MUST_READ,
|
||||||
IOobject::NO_WRITE,
|
IOobject::NO_WRITE,
|
||||||
false
|
IOobject::NO_REGISTER
|
||||||
)
|
)
|
||||||
);
|
);
|
||||||
|
|
||||||
@ -282,7 +282,7 @@ Foam::autoPtr<Foam::faMesh> Foam::faMeshTools::loadOrCreateMesh
|
|||||||
io.db(),
|
io.db(),
|
||||||
IOobject::MUST_READ,
|
IOobject::MUST_READ,
|
||||||
IOobject::NO_WRITE,
|
IOobject::NO_WRITE,
|
||||||
false
|
IOobject::NO_REGISTER
|
||||||
)
|
)
|
||||||
);
|
);
|
||||||
|
|
||||||
|
|||||||
@ -31,6 +31,7 @@ Description
|
|||||||
|
|
||||||
SourceFiles
|
SourceFiles
|
||||||
faMeshTools.C
|
faMeshTools.C
|
||||||
|
faMeshToolsChecks.C
|
||||||
faMeshToolsProcAddr.C
|
faMeshToolsProcAddr.C
|
||||||
faMeshToolsTemplates.C
|
faMeshToolsTemplates.C
|
||||||
|
|
||||||
@ -134,6 +135,13 @@ public:
|
|||||||
const GeometricField<Type, faePatchField, edgeMesh>& fld,
|
const GeometricField<Type, faePatchField, edgeMesh>& fld,
|
||||||
const bool primitiveOrdering = false
|
const bool primitiveOrdering = false
|
||||||
);
|
);
|
||||||
|
|
||||||
|
//- Report mesh information
|
||||||
|
static void printMeshChecks
|
||||||
|
(
|
||||||
|
const faMesh& mesh,
|
||||||
|
const int verbose = 1
|
||||||
|
);
|
||||||
};
|
};
|
||||||
|
|
||||||
|
|
||||||
|
|||||||
@ -8,15 +8,37 @@
|
|||||||
Copyright (C) 2021-2022 OpenCFD Ltd.
|
Copyright (C) 2021-2022 OpenCFD Ltd.
|
||||||
-------------------------------------------------------------------------------
|
-------------------------------------------------------------------------------
|
||||||
License
|
License
|
||||||
This file is part of OpenFOAM, distributed under GPL-3.0-or-later.
|
This file is part of OpenFOAM.
|
||||||
|
|
||||||
Description
|
OpenFOAM is free software: you can redistribute it and/or modify it
|
||||||
Summary of faMesh information
|
under the terms of the GNU General Public License as published by
|
||||||
|
the Free Software Foundation, either version 3 of the License, or
|
||||||
|
(at your option) any later version.
|
||||||
|
|
||||||
|
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
|
||||||
|
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
|
||||||
|
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
|
||||||
|
for more details.
|
||||||
|
|
||||||
|
You should have received a copy of the GNU General Public License
|
||||||
|
along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
|
||||||
|
|
||||||
\*---------------------------------------------------------------------------*/
|
\*---------------------------------------------------------------------------*/
|
||||||
|
|
||||||
|
#include "faMeshTools.H"
|
||||||
|
#include "areaFields.H"
|
||||||
|
#include "edgeFields.H"
|
||||||
|
#include "processorFaPatch.H"
|
||||||
|
|
||||||
|
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
|
||||||
|
|
||||||
|
void Foam::faMeshTools::printMeshChecks
|
||||||
|
(
|
||||||
|
const faMesh& mesh,
|
||||||
|
const int verbose
|
||||||
|
)
|
||||||
{
|
{
|
||||||
const faBoundaryMesh& patches = aMesh.boundary();
|
const faBoundaryMesh& patches = mesh.boundary();
|
||||||
const label nNonProcessor = patches.nNonProcessor();
|
const label nNonProcessor = patches.nNonProcessor();
|
||||||
const label nPatches = patches.size();
|
const label nPatches = patches.size();
|
||||||
|
|
||||||
@ -36,19 +58,19 @@ Description
|
|||||||
|
|
||||||
const labelList nFaces
|
const labelList nFaces
|
||||||
(
|
(
|
||||||
UPstream::listGatherValues<label>(aMesh.nFaces())
|
UPstream::listGatherValues<label>(mesh.nFaces())
|
||||||
);
|
);
|
||||||
const labelList nPoints
|
const labelList nPoints
|
||||||
(
|
(
|
||||||
UPstream::listGatherValues<label>(aMesh.nPoints())
|
UPstream::listGatherValues<label>(mesh.nPoints())
|
||||||
);
|
);
|
||||||
const labelList nEdges
|
const labelList nEdges
|
||||||
(
|
(
|
||||||
UPstream::listGatherValues<label>(aMesh.nEdges())
|
UPstream::listGatherValues<label>(mesh.nEdges())
|
||||||
);
|
);
|
||||||
const labelList nIntEdges
|
const labelList nIntEdges
|
||||||
(
|
(
|
||||||
UPstream::listGatherValues<label>(aMesh.nInternalEdges())
|
UPstream::listGatherValues<label>(mesh.nInternalEdges())
|
||||||
);
|
);
|
||||||
|
|
||||||
// The "real" (non-processor) boundary edges
|
// The "real" (non-processor) boundary edges
|
||||||
@ -56,7 +78,7 @@ Description
|
|||||||
(
|
(
|
||||||
UPstream::listGatherValues<label>
|
UPstream::listGatherValues<label>
|
||||||
(
|
(
|
||||||
aMesh.nBoundaryEdges() - nLocalProcEdges
|
mesh.nBoundaryEdges() - nLocalProcEdges
|
||||||
)
|
)
|
||||||
);
|
);
|
||||||
const labelList nProcEdges
|
const labelList nProcEdges
|
||||||
@ -70,10 +92,10 @@ Description
|
|||||||
// per-proc: (...)
|
// per-proc: (...)
|
||||||
|
|
||||||
const auto reporter =
|
const auto reporter =
|
||||||
[&](const char* tag, const labelList& list)
|
[&,verbose](const char* tag, const labelList& list)
|
||||||
{
|
{
|
||||||
Info<< " Number of " << tag << ": " << sum(list) << nl;
|
Info<< " Number of " << tag << ": " << sum(list) << nl;
|
||||||
if (Pstream::parRun())
|
if (Pstream::parRun() && verbose)
|
||||||
{
|
{
|
||||||
int padding = static_cast<int>
|
int padding = static_cast<int>
|
||||||
(
|
(
|
||||||
@ -92,7 +114,7 @@ Description
|
|||||||
Info<< "----------------" << nl
|
Info<< "----------------" << nl
|
||||||
<< "Mesh Information" << nl
|
<< "Mesh Information" << nl
|
||||||
<< "----------------" << nl
|
<< "----------------" << nl
|
||||||
<< " " << "boundingBox: " << boundBox(aMesh.points()) << nl;
|
<< " " << "boundingBox: " << boundBox(mesh.points()) << nl;
|
||||||
|
|
||||||
if (Pstream::master())
|
if (Pstream::master())
|
||||||
{
|
{
|
||||||
@ -124,26 +146,26 @@ Description
|
|||||||
}
|
}
|
||||||
|
|
||||||
Info<< "----------------" << nl
|
Info<< "----------------" << nl
|
||||||
<< "Used polyPatches: " << flatOutput(aMesh.whichPolyPatches()) << nl;
|
<< "Used polyPatches: " << flatOutput(mesh.whichPolyPatches()) << nl;
|
||||||
|
|
||||||
|
|
||||||
// Geometry information
|
// Geometry information
|
||||||
Info<< nl;
|
Info<< nl;
|
||||||
{
|
{
|
||||||
scalarMinMax limit(gMinMax(aMesh.S().field()));
|
scalarMinMax limit(gMinMax(mesh.S().field()));
|
||||||
Info<< "Face area:" << nl
|
Info<< "Face area:" << nl
|
||||||
<< " min = " << limit.min() << " max = " << limit.max() << nl;
|
<< " min = " << limit.min() << " max = " << limit.max() << nl;
|
||||||
}
|
}
|
||||||
|
|
||||||
{
|
{
|
||||||
scalarMinMax limit(minMax(aMesh.magLe().primitiveField()));
|
scalarMinMax limit(minMax(mesh.magLe().primitiveField()));
|
||||||
|
|
||||||
// Include processor boundaries into 'internal' edges
|
// Include processor boundaries into 'internal' edges
|
||||||
if (Pstream::parRun())
|
if (Pstream::parRun())
|
||||||
{
|
{
|
||||||
for (label patchi = nNonProcessor; patchi < nPatches; ++patchi)
|
for (label patchi = nNonProcessor; patchi < nPatches; ++patchi)
|
||||||
{
|
{
|
||||||
limit.add(minMax(aMesh.magLe().boundaryField()[patchi]));
|
limit.add(minMax(mesh.magLe().boundaryField()[patchi]));
|
||||||
}
|
}
|
||||||
|
|
||||||
reduce(limit, minMaxOp<scalar>());
|
reduce(limit, minMaxOp<scalar>());
|
||||||
@ -156,7 +178,7 @@ Description
|
|||||||
// Include (non-processor) boundaries
|
// Include (non-processor) boundaries
|
||||||
for (label patchi = 0; patchi < nNonProcessor; ++patchi)
|
for (label patchi = 0; patchi < nNonProcessor; ++patchi)
|
||||||
{
|
{
|
||||||
limit.add(minMax(aMesh.magLe().boundaryField()[patchi]));
|
limit.add(minMax(mesh.magLe().boundaryField()[patchi]));
|
||||||
}
|
}
|
||||||
|
|
||||||
if (Pstream::parRun())
|
if (Pstream::parRun())
|
||||||
@ -171,7 +193,7 @@ Description
|
|||||||
// Not particularly meaningful
|
// Not particularly meaningful
|
||||||
#if 0
|
#if 0
|
||||||
{
|
{
|
||||||
MinMax<vector> limit(gMinMax(aMesh.faceAreaNormals().field()));
|
MinMax<vector> limit(gMinMax(mesh.faceAreaNormals().field()));
|
||||||
|
|
||||||
Info<< "Face area normals:" << nl
|
Info<< "Face area normals:" << nl
|
||||||
<< " min = " << limit.min() << " max = " << limit.max() << nl;
|
<< " min = " << limit.min() << " max = " << limit.max() << nl;
|
||||||
@ -238,7 +238,7 @@ Foam::faMeshTools::readProcAddressing
|
|||||||
mesh.thisDb(),
|
mesh.thisDb(),
|
||||||
IOobject::READ_IF_PRESENT,
|
IOobject::READ_IF_PRESENT,
|
||||||
IOobject::NO_WRITE,
|
IOobject::NO_WRITE,
|
||||||
false // no register
|
IOobject::NO_REGISTER
|
||||||
);
|
);
|
||||||
|
|
||||||
//if (ioAddr.typeHeaderOk<labelIOList>(true))
|
//if (ioAddr.typeHeaderOk<labelIOList>(true))
|
||||||
@ -327,7 +327,7 @@ void Foam::faMeshTools::writeProcAddressing
|
|||||||
(procMesh && !decompose ? procMesh->thisDb() : mesh.thisDb()),
|
(procMesh && !decompose ? procMesh->thisDb() : mesh.thisDb()),
|
||||||
IOobject::NO_READ,
|
IOobject::NO_READ,
|
||||||
IOobject::NO_WRITE,
|
IOobject::NO_WRITE,
|
||||||
false // no register
|
IOobject::NO_REGISTER
|
||||||
);
|
);
|
||||||
|
|
||||||
|
|
||||||
@ -418,7 +418,7 @@ void Foam::faMeshTools::writeProcAddressing
|
|||||||
mesh.thisDb(),
|
mesh.thisDb(),
|
||||||
IOobject::NO_READ,
|
IOobject::NO_READ,
|
||||||
IOobject::NO_WRITE,
|
IOobject::NO_WRITE,
|
||||||
false // no register
|
IOobject::NO_REGISTER
|
||||||
),
|
),
|
||||||
map
|
map
|
||||||
);
|
);
|
||||||
|
|||||||
@ -45,6 +45,7 @@ SourceFiles
|
|||||||
#define Foam_faFieldDecomposer_H
|
#define Foam_faFieldDecomposer_H
|
||||||
|
|
||||||
#include "faMesh.H"
|
#include "faMesh.H"
|
||||||
|
#include "faMeshSubset.H"
|
||||||
#include "faPatchFieldMapper.H"
|
#include "faPatchFieldMapper.H"
|
||||||
#include "edgeFields.H"
|
#include "edgeFields.H"
|
||||||
|
|
||||||
@ -446,6 +447,26 @@ public:
|
|||||||
const IOobjectList& objects
|
const IOobjectList& objects
|
||||||
);
|
);
|
||||||
|
|
||||||
|
//- Read all fields given mesh and objects.
|
||||||
|
//- Supports reading/sending fields
|
||||||
|
void readAllFields
|
||||||
|
(
|
||||||
|
const bitSet& haveMeshOnProc,
|
||||||
|
const faMeshSubset* subsetter,
|
||||||
|
const faMesh& mesh,
|
||||||
|
IOobjectList& objects
|
||||||
|
);
|
||||||
|
|
||||||
|
//- Read all fields given mesh and objects.
|
||||||
|
//- Supports reading/sending fields
|
||||||
|
void readAllFields
|
||||||
|
(
|
||||||
|
const boolList& haveMeshOnProc,
|
||||||
|
const faMeshSubset* subsetter,
|
||||||
|
const faMesh& mesh,
|
||||||
|
IOobjectList& objects
|
||||||
|
);
|
||||||
|
|
||||||
//- Decompose and write all fields
|
//- Decompose and write all fields
|
||||||
void decomposeAllFields
|
void decomposeAllFields
|
||||||
(
|
(
|
||||||
|
|||||||
@ -77,7 +77,11 @@ public:
|
|||||||
|
|
||||||
bool empty() const noexcept { return !size(); }
|
bool empty() const noexcept { return !size(); }
|
||||||
|
|
||||||
void readAll(const faMesh& mesh, const IOobjectList& objects)
|
void readAll
|
||||||
|
(
|
||||||
|
const faMesh& mesh,
|
||||||
|
const IOobjectList& objects
|
||||||
|
)
|
||||||
{
|
{
|
||||||
#undef doLocalCode
|
#undef doLocalCode
|
||||||
#define doLocalCode(Type) \
|
#define doLocalCode(Type) \
|
||||||
@ -113,6 +117,45 @@ public:
|
|||||||
#undef doLocalCode
|
#undef doLocalCode
|
||||||
}
|
}
|
||||||
|
|
||||||
|
template<class BoolListType>
|
||||||
|
void readAll
|
||||||
|
(
|
||||||
|
const BoolListType& haveMeshOnProc,
|
||||||
|
const faMeshSubset*& subsetter,
|
||||||
|
const faMesh& mesh,
|
||||||
|
IOobjectList& objects
|
||||||
|
)
|
||||||
|
{
|
||||||
|
#undef doLocalCode
|
||||||
|
#define doLocalCode(Type) \
|
||||||
|
{ \
|
||||||
|
fieldsDistributor::readFields \
|
||||||
|
( \
|
||||||
|
haveMeshOnProc, \
|
||||||
|
subsetter, \
|
||||||
|
mesh, \
|
||||||
|
objects, \
|
||||||
|
Type##AreaFields_ \
|
||||||
|
); \
|
||||||
|
fieldsDistributor::readFields \
|
||||||
|
( \
|
||||||
|
haveMeshOnProc, \
|
||||||
|
subsetter, \
|
||||||
|
mesh, \
|
||||||
|
objects, \
|
||||||
|
Type##EdgeFields_ \
|
||||||
|
); \
|
||||||
|
}
|
||||||
|
|
||||||
|
doLocalCode(scalar);
|
||||||
|
doLocalCode(vector);
|
||||||
|
doLocalCode(sphericalTensor);
|
||||||
|
doLocalCode(symmTensor);
|
||||||
|
doLocalCode(tensor);
|
||||||
|
|
||||||
|
#undef doLocalCode
|
||||||
|
}
|
||||||
|
|
||||||
template<class GeoField>
|
template<class GeoField>
|
||||||
static void decompose
|
static void decompose
|
||||||
(
|
(
|
||||||
@ -205,6 +248,36 @@ void Foam::faFieldDecomposer::fieldsCache::readAllFields
|
|||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
|
void Foam::faFieldDecomposer::fieldsCache::readAllFields
|
||||||
|
(
|
||||||
|
const bitSet& haveMeshOnProc,
|
||||||
|
const faMeshSubset* subsetter,
|
||||||
|
const faMesh& mesh,
|
||||||
|
IOobjectList& objects
|
||||||
|
)
|
||||||
|
{
|
||||||
|
if (cache_)
|
||||||
|
{
|
||||||
|
cache_->readAll(haveMeshOnProc, subsetter, mesh, objects);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
void Foam::faFieldDecomposer::fieldsCache::readAllFields
|
||||||
|
(
|
||||||
|
const boolList& haveMeshOnProc,
|
||||||
|
const faMeshSubset* subsetter,
|
||||||
|
const faMesh& mesh,
|
||||||
|
IOobjectList& objects
|
||||||
|
)
|
||||||
|
{
|
||||||
|
if (cache_)
|
||||||
|
{
|
||||||
|
cache_->readAll(haveMeshOnProc, subsetter, mesh, objects);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
void Foam::faFieldDecomposer::fieldsCache::decomposeAllFields
|
void Foam::faFieldDecomposer::fieldsCache::decomposeAllFields
|
||||||
(
|
(
|
||||||
const faFieldDecomposer& decomposer,
|
const faFieldDecomposer& decomposer,
|
||||||
|
|||||||
90
tutorials/incompressible/pimpleFoam/laminar/filmPanel0/Allrun-distributed
Executable file
90
tutorials/incompressible/pimpleFoam/laminar/filmPanel0/Allrun-distributed
Executable file
@ -0,0 +1,90 @@
|
|||||||
|
#!/bin/sh
|
||||||
|
cd "${0%/*}" || exit # Run from this directory
|
||||||
|
. ${WM_PROJECT_DIR:?}/bin/tools/RunFunctions # Tutorial run functions
|
||||||
|
#------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
## ./Allclean
|
||||||
|
|
||||||
|
rootDir="test-distributed"
|
||||||
|
caseName="${PWD##*/}"
|
||||||
|
|
||||||
|
#not yet: fileHandler="-fileHandler collated"
|
||||||
|
unset fileHandler
|
||||||
|
|
||||||
|
restore0Dir
|
||||||
|
|
||||||
|
runApplication blockMesh
|
||||||
|
|
||||||
|
if [ -d "$rootDir" ]
|
||||||
|
then
|
||||||
|
echo "Directory already exists: $rootDir"
|
||||||
|
fi
|
||||||
|
|
||||||
|
masterDecompParDict="$rootDir/machineA/$caseName/system/decomposeParDict"
|
||||||
|
caseOption="-case $rootDir/machineA/$caseName"
|
||||||
|
|
||||||
|
for subdir in machineA machineB machineC machineD
|
||||||
|
do
|
||||||
|
mkdir -p "$rootDir/$subdir/$caseName"
|
||||||
|
done
|
||||||
|
|
||||||
|
# Master
|
||||||
|
masterCase="$rootDir/machineA/$caseName"
|
||||||
|
|
||||||
|
for instance in 0 constant system
|
||||||
|
do
|
||||||
|
if [ -d "$masterCase/$instance" ]
|
||||||
|
then
|
||||||
|
echo " Directory exists: $targetDir/$instance"
|
||||||
|
else
|
||||||
|
echo "Copy $instance/ to master root: $masterCase"
|
||||||
|
cp -R "$instance" "$masterCase"
|
||||||
|
fi
|
||||||
|
done
|
||||||
|
|
||||||
|
# others (nothing to copy)
|
||||||
|
|
||||||
|
|
||||||
|
# Add distributed roots
|
||||||
|
# - seems to be fine with relative root
|
||||||
|
## rootDir="$PWD/$rootDir"
|
||||||
|
|
||||||
|
cat<< CASE_ROOTS >> "$masterCase/system/decomposeParDict"
|
||||||
|
|
||||||
|
distributed true;
|
||||||
|
|
||||||
|
roots
|
||||||
|
(
|
||||||
|
//master: "$rootDir/machineA"
|
||||||
|
"$rootDir/machineA"
|
||||||
|
"$rootDir/machineA"
|
||||||
|
|
||||||
|
"$rootDir/machineB"
|
||||||
|
"$rootDir/machineB"
|
||||||
|
"$rootDir/machineB"
|
||||||
|
|
||||||
|
"$rootDir/machineC"
|
||||||
|
"$rootDir/machineC"
|
||||||
|
"$rootDir/machineC"
|
||||||
|
|
||||||
|
"$rootDir/machineD"
|
||||||
|
"$rootDir/machineD"
|
||||||
|
"$rootDir/machineD"
|
||||||
|
);
|
||||||
|
CASE_ROOTS
|
||||||
|
|
||||||
|
#------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
#export FOAM_ABORT=true
|
||||||
|
|
||||||
|
runParallel -s decompose redistributePar -decompose -overwrite \
|
||||||
|
-no-finite-area $caseOption $fileHandler
|
||||||
|
|
||||||
|
runParallel checkMesh $caseOption $fileHandler
|
||||||
|
|
||||||
|
runParallel makeFaMesh $caseOption $fileHandler
|
||||||
|
|
||||||
|
runParallel $(getApplication) $caseOption $fileHandler
|
||||||
|
|
||||||
|
|
||||||
|
#------------------------------------------------------------------------------
|
||||||
@ -1,58 +0,0 @@
|
|||||||
#!/bin/sh
|
|
||||||
cd "${0%/*}" || exit # Run from this directory
|
|
||||||
. ${WM_PROJECT_DIR:?}/bin/tools/RunFunctions # Tutorial run functions
|
|
||||||
#------------------------------------------------------------------------------
|
|
||||||
|
|
||||||
## ./Allclean
|
|
||||||
|
|
||||||
restore0Dir
|
|
||||||
|
|
||||||
runApplication blockMesh
|
|
||||||
|
|
||||||
rm -rf test-distribute
|
|
||||||
masterDecompParDict="test-distribute/machineA/testcase/system/decomposeParDict"
|
|
||||||
|
|
||||||
for subdir in machineA machineB machineC machineD
|
|
||||||
do
|
|
||||||
mkdir -p test-distribute/"$subdir"/testcase
|
|
||||||
done
|
|
||||||
|
|
||||||
# master
|
|
||||||
cp -R 0 constant system test-distribute/machineA/testcase
|
|
||||||
# others (nothing to copy)
|
|
||||||
|
|
||||||
|
|
||||||
cat<< CASE_ROOTS >> "$masterDecompParDict"
|
|
||||||
|
|
||||||
distributed true;
|
|
||||||
|
|
||||||
roots
|
|
||||||
(
|
|
||||||
//master: "$PWD/test-distribute/machineA"
|
|
||||||
"$PWD/test-distribute/machineA"
|
|
||||||
"$PWD/test-distribute/machineA"
|
|
||||||
|
|
||||||
"$PWD/test-distribute/machineB"
|
|
||||||
"$PWD/test-distribute/machineB"
|
|
||||||
"$PWD/test-distribute/machineB"
|
|
||||||
|
|
||||||
"$PWD/test-distribute/machineC"
|
|
||||||
"$PWD/test-distribute/machineC"
|
|
||||||
"$PWD/test-distribute/machineC"
|
|
||||||
|
|
||||||
"$PWD/test-distribute/machineD"
|
|
||||||
"$PWD/test-distribute/machineD"
|
|
||||||
"$PWD/test-distribute/machineD"
|
|
||||||
);
|
|
||||||
CASE_ROOTS
|
|
||||||
|
|
||||||
#export FOAM_ABORT=true
|
|
||||||
|
|
||||||
runParallel -s decompose redistributePar -decompose -case test-distribute/machineA/testcase
|
|
||||||
|
|
||||||
# Currently fails (OpenFOAM-v2206)
|
|
||||||
runParallel checkFaMesh -case test-distribute/machineA/testcase
|
|
||||||
|
|
||||||
exit 0
|
|
||||||
|
|
||||||
#------------------------------------------------------------------------------
|
|
||||||
Reference in New Issue
Block a user