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BUG: collated ensight not working with isosurfaces (closes #318)

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- the problem arises since the various surface writers are stateless.
  The collated output format hacks around this limitation by adding in
  its own fieldDict caching (to disk).

  Now include an updateMesh() method to hook into geometry changes.
  This is considered a stop-gap measure until the surface output
  handling is improved.
This commit is contained in:
Mark Olesen
2018-05-07 16:59:15 +02:00
parent b0648f2ba0
commit 01a313d889
11 changed files with 223 additions and 71 deletions
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2
src/fileFormats/ensight/file/ensightCase.C
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@ -138,7 +138,7 @@ Foam::scalar Foam::ensightCase::writeTimeset() const
{
const label ts = 1;
const labelList indices = timesUsed_.sortedToc();
const labelList indices(timesUsed_.sortedToc());
label count = indices.size();
// correct for negative starting values

2
src/fileFormats/ensight/file/ensightCase.H
View File

@ -106,7 +106,7 @@ private:
//- Record time indices when geometry is written.
// These values will be used to decide if timeset 1
// or a separate timeset are used.
// The special index '-1' is used static geometry.
// The special index '-1' is used for static geometry.
mutable labelHashSet geomTimes_;
//- Record time indices when clouds are written.

23
src/sampling/sampledSurface/sampledSurfaces/sampledSurfaces.C
View File

@ -135,6 +135,7 @@ Foam::sampledSurfaces::sampledSurfaces
sampleFaceScheme_(word::null),
sampleNodeScheme_(word::null),
mergedList_(),
changedGeom_(),
formatter_(nullptr)
{
if (Pstream::parRun())
@ -168,6 +169,7 @@ Foam::sampledSurfaces::sampledSurfaces
sampleFaceScheme_(word::null),
sampleNodeScheme_(word::null),
mergedList_(),
changedGeom_(),
formatter_(nullptr)
{
read(dict);
@ -219,11 +221,12 @@ bool Foam::sampledSurfaces::write()
const label nFields = classifyFields();
// write geometry first if required,
// Write geometry first if required,
// or when no fields would otherwise be written
if (nFields == 0 || formatter_->separateGeometry())
if (formatter_->separateGeometry() || !nFields)
{
writeGeometry();
changedGeom_ = false;
}
const IOobjectList objects(obr_, obr_.time().timeName());
@ -246,9 +249,7 @@ bool Foam::sampledSurfaces::write()
bool Foam::sampledSurfaces::read(const dictionary& dict)
{
bool surfacesFound = dict.found("surfaces");
if (surfacesFound)
if (dict.found("surfaces"))
{
sampleFaceScheme_ = dict.lookupOrDefault<word>("sampleScheme", "cell");
@ -304,6 +305,10 @@ bool Foam::sampledSurfaces::read(const dictionary& dict)
Pout<< ")" << endl;
}
// New geometry
changedGeom_.resize(size());
changedGeom_ = true;
return true;
}
@ -369,6 +374,8 @@ bool Foam::sampledSurfaces::expire()
}
}
changedGeom_ = true;
// true if any surfaces just expired
return justExpired;
}
@ -388,9 +395,12 @@ bool Foam::sampledSurfaces::update()
{
forAll(*this, surfi)
{
if (operator[](surfi).update())
sampledSurface& s = operator[](surfi);
if (s.update())
{
updated = true;
changedGeom_[surfi] = true;
}
}
@ -414,6 +424,7 @@ bool Foam::sampledSurfaces::update()
if (s.update())
{
updated = true;
changedGeom_[surfi] = true;
mergedList_[surfi].merge(s, mergeDim);
}
}

3
src/sampling/sampledSurface/sampledSurfaces/sampledSurfaces.H
View File

@ -151,6 +151,9 @@ class sampledSurfaces
//- Merged meshed surfaces (parallel only)
List<mergedSurf> mergedList_;
//- Track which surfaces have changed
List<bool> changedGeom_;
// Calculated

7
src/sampling/sampledSurface/sampledSurfaces/sampledSurfacesTemplates.C
View File

@ -42,6 +42,13 @@ void Foam::sampledSurfaces::writeSurface
{
const sampledSurface& s = operator[](surfi);
if (changedGeom_[surfi])
{
// Trigger any changes
formatter_->updateMesh(outputDir, s.name());
changedGeom_[surfi] = false;
}
if (Pstream::parRun())
{
// Collect values from all processors

111
src/sampling/sampledSurface/writers/ensight/ensightSurfaceWriter.C
View File

@ -3,7 +3,7 @@
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2013 OpenFOAM Foundation
\\/ M anipulation | Copyright (C) 2015-2016 OpenCFD Ltd.
\\/ M anipulation | Copyright (C) 2015-2018 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
@ -36,6 +36,61 @@ namespace Foam
}
// * * * * * * * * * * * * * Static Member Functions * * * * * * * * * * * * //
void Foam::ensightSurfaceWriter::printTimeset
(
OSstream& os,
const label ts,
const scalar& timeValue
)
{
os
<< "time set: " << ts << nl
<< "number of steps: " << 1 << nl;
// Assume to be contiguous numbering
os << "filename start number: 0" << nl
<< "filename increment: 1" << nl
<< "time values:" << nl;
os << " " << timeValue
<< nl << nl;
}
void Foam::ensightSurfaceWriter::printTimeset
(
OSstream& os,
const label ts,
const UList<scalar>& values
)
{
label count = values.size();
os
<< "time set: " << ts << nl
<< "number of steps: " << count << nl;
// Assume to be contiguous numbering
os << "filename start number: 0" << nl
<< "filename increment: 1" << nl
<< "time values:" << nl;
count = 0;
for (const scalar& t : values)
{
os << ' ' << setw(12) << t;
if (++count % 6 == 0)
{
os << nl;
}
}
os << nl << nl;
}
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
Foam::ensightSurfaceWriter::ensightSurfaceWriter()
@ -75,6 +130,47 @@ bool Foam::ensightSurfaceWriter::separateGeometry() const
}
void Foam::ensightSurfaceWriter::updateMesh
(
const fileName& outputDir,
const fileName& surfaceName
) const
{
if (collateTimes_ && Pstream::master())
{
const ensight::FileName surfName(surfaceName);
const fileName baseDir = outputDir.path()/surfName;
const fileName timeDir = outputDir.name();
const scalar timeValue = readScalar(timeDir);
if (!isDir(baseDir))
{
mkDir(baseDir);
}
dictionary dict;
if (isFile(baseDir/"fieldsDict"))
{
IFstream is(baseDir/"fieldsDict");
if (is.good() && dict.read(is))
{
dict.read(is);
}
}
dict.set("updateMesh", timeValue);
{
OFstream os(baseDir/"fieldsDict");
os << "// Summary of Ensight fields, times" << nl << nl;
dict.write(os, false);
}
}
}
Foam::fileName Foam::ensightSurfaceWriter::write
(
const fileName& outputDir,
@ -92,8 +188,6 @@ Foam::fileName Foam::ensightSurfaceWriter::write
mkDir(outputDir);
}
const scalar timeValue = 0.0;
OFstream osCase(outputDir/surfName + ".case");
ensightGeoFile osGeom
(
@ -114,14 +208,9 @@ Foam::fileName Foam::ensightSurfaceWriter::write
<< "GEOMETRY" << nl
<< "model: 1 " << osGeom.name().name() << nl
<< nl
<< "TIME" << nl
<< "time set: 1" << nl
<< "number of steps: 1" << nl
<< "filename start number: 0" << nl
<< "filename increment: 1" << nl
<< "time values:" << nl
<< " " << timeValue << nl
<< nl;
<< "TIME" << nl;
printTimeset(osCase, 1, 0.0);
ensightPartFaces ensPart(0, osGeom.name().name(), points, faces, true);
osGeom << ensPart;

26
src/sampling/sampledSurface/writers/ensight/ensightSurfaceWriter.H
View File

@ -3,7 +3,7 @@
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011 OpenFOAM Foundation
\\/ M anipulation | Copyright (C) 2015-2016 OpenCFD Ltd.
\\/ M anipulation | Copyright (C) 2015-2018 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
@ -79,6 +79,23 @@ class ensightSurfaceWriter
// Private Member Functions
//- Print time-set for ensight case file
static void printTimeset
(
OSstream& os,
const label ts,
const scalar& timeValue
);
//- Print time-set for ensight case file
static void printTimeset
(
OSstream& os,
const label ts,
const UList<scalar>& times
);
//- Templated write operation - one file per timestep
template<class Type>
fileName writeCollated
@ -144,6 +161,13 @@ public:
// False if geometry and field must be in a single file
virtual bool separateGeometry() const;
//- Trigger for geometry changes.
// \note this is a stop-gap solution
virtual void updateMesh
(
const fileName& outputDir,
const fileName& surfaceName
) const; // override
//- Write single surface geometry to file.
virtual fileName write

108
src/sampling/sampledSurface/writers/ensight/ensightSurfaceWriterTemplates.C
View File

@ -3,7 +3,7 @@
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2014 OpenFOAM Foundation
\\/ M anipulation | Copyright (C) 2015-2016 OpenCFD Ltd.
\\/ M anipulation | Copyright (C) 2015-2018 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
@ -29,7 +29,6 @@ License
#include "ensightPartFaces.H"
#include "ensightSerialOutput.H"
#include "ensightPTraits.H"
#include "StringStream.H"
// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
@ -63,15 +62,13 @@ Foam::fileName Foam::ensightSurfaceWriter::writeUncollated
const fileName baseDir = outputDir/varName;
const fileName timeDir = outputDir.name();
const scalar timeValue = readScalar(timeDir);
if (!isDir(baseDir))
{
mkDir(baseDir);
}
// const scalar timeValue = Foam::name(this->mesh().time().timeValue());
const scalar timeValue = readScalar(timeDir);
OFstream osCase(baseDir/surfName + ".case");
ensightGeoFile osGeom
(
@ -109,14 +106,10 @@ Foam::fileName Foam::ensightSurfaceWriter::writeUncollated
<< setw(15) << varName
<< " " << surfName.c_str() << ".********." << varName << nl
<< nl
<< "TIME" << nl
<< "time set: 1" << nl
<< "number of steps: 1" << nl
<< "filename start number: 0" << nl
<< "filename increment: 1" << nl
<< "time values:" << nl
<< " " << timeValue
<< nl << nl << "# end" << nl;
<< "TIME" << nl;
printTimeset(osCase, 1, timeValue);
osCase << "# end" << nl;
ensightPartFaces ensPart
(
@ -171,20 +164,22 @@ Foam::fileName Foam::ensightSurfaceWriter::writeCollated
const fileName baseDir = outputDir.path()/surfName;
const fileName timeDir = outputDir.name();
const scalar timeValue = readScalar(timeDir);
scalar meshValue = 0;
if (!isDir(baseDir))
{
mkDir(baseDir);
}
// surfName already validated
const fileName meshFile(baseDir/surfName + ".000000.mesh");
const scalar timeValue = readScalar(timeDir);
label timeIndex = 0;
label meshIndex = 0, timeIndex = 0;
fileName meshFile;
// Do case file
{
dictionary dict;
scalarList meshes;
scalarList times;
bool stateChanged = false;
@ -193,26 +188,56 @@ Foam::fileName Foam::ensightSurfaceWriter::writeCollated
IFstream is(baseDir/"fieldsDict");
if (is.good() && dict.read(is))
{
dict.lookup("times") >> times;
const scalar timeValue = readScalar(timeDir);
label index = findLower(times, timeValue);
timeIndex = index+1;
dict.readIfPresent("meshes", meshes);
dict.readIfPresent("times", times);
timeIndex = 1+findLower(times, timeValue);
if (dict.readIfPresent("updateMesh", meshValue))
{
meshIndex = 1+findLower(meshes, meshValue);
dict.remove("updateMesh");
stateChanged = true;
}
else if (meshes.size())
{
meshIndex = meshes.size()-1;
meshValue = meshes.last();
}
else
{
meshIndex = 0;
}
}
}
// Update stored times list
times.setSize(timeIndex+1, -1);
meshes.resize(meshIndex+1, -1);
times.resize(timeIndex+1, -1);
if (meshes[meshIndex] != meshValue)
{
stateChanged = true;
}
if (times[timeIndex] != timeValue)
{
stateChanged = true;
}
meshes[meshIndex] = meshValue;
times[timeIndex] = timeValue;
// surfName already validated
meshFile =
(
baseDir/"data"/word::printf("%06d", meshIndex)/"geometry"
);
// Add my information to dictionary
{
dict.set("meshes", meshes);
dict.set("times", times);
if (dict.found("fields"))
{
@ -252,7 +277,7 @@ Foam::fileName Foam::ensightSurfaceWriter::writeCollated
}
{
OFstream os(baseDir/"fieldsDict");
os << "// summary of ensight times/fields" << nl << nl;
os << "// Summary of Ensight fields, times" << nl << nl;
dict.write(os, false);
}
@ -268,7 +293,8 @@ Foam::fileName Foam::ensightSurfaceWriter::writeCollated
<< "type: ensight gold" << nl
<< nl
<< "GEOMETRY" << nl
<< "model: 1 " << meshFile.name() << nl
<< "model: 2 " // time-set 2
<< " data/******/geometry" << nl
<< nl
<< "VARIABLE" << nl;
@ -298,24 +324,12 @@ Foam::fileName Foam::ensightSurfaceWriter::writeCollated
osCase << nl;
osCase
<< "TIME" << nl
<< "time set: 1" << nl
<< "number of steps: " << timeIndex+1 << nl
<< "filename start number: 0" << nl
<< "filename increment: 1" << nl
<< "time values:" << nl;
<< "TIME" << nl;
label count = 0;
forAll(times, timei)
{
osCase << ' ' << setw(12) << times[timei];
printTimeset(osCase, 1, times);
printTimeset(osCase, 2, meshes);
if (!(++count % 6))
{
osCase << nl;
}
}
osCase << nl << nl << "# end" << nl;
osCase << "# end" << nl;
}
}
@ -341,16 +355,8 @@ Foam::fileName Foam::ensightSurfaceWriter::writeCollated
}
// Get string representation
string timeString;
{
OStringStream os;
os.stdStream().fill('0');
os << setw(6) << timeIndex;
timeString = os.str();
}
fileName dataDir = baseDir/"data"/timeString;
// Location for data
fileName dataDir = baseDir/"data"/word::printf("%06d", timeIndex);
// As per mkdir -p "data/000000"
mkDir(dataDir);

10
src/sampling/sampledSurface/writers/surfaceWriter.H
View File

@ -113,6 +113,16 @@ public:
return false;
}
//- Trigger for geometry changes.
// \note this is a stop-gap solution until the writing infrastructure
// is improved.
virtual void updateMesh
(
const fileName& outputDir,
const fileName& surfaceName
) const
{}
//- Write single surface geometry to file.
virtual fileName write
(

1
tutorials/compressible/rhoSimpleFoam/squareBend/system/controlDict
View File

@ -52,6 +52,7 @@ runTimeModifiable true;
functions
{
#include "sampling"
// #include "samplingDebug"
}

1
tutorials/compressible/rhoSimpleFoam/squareBend/system/samplingDebug
View File

@ -21,6 +21,7 @@ debug
ensight
{
collateTimes true;
// collateTimes false;
}
}