Update to bin scripts

bin/doxyClassPatch

@@ -0,0 +1,103 @@
+#!/bin/sh
+# -----------------------------------------------------------------------------
+# =========                 |
+# \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+#  \\    /   O peration     |
+#   \\  /    A nd           | Copyright (C) 1991-2007 OpenCFD Ltd.
+#    \\/     M anipulation  |
+# ------------------------------------------------------------------------------
+# License
+#     This file is part of OpenFOAM.
+#
+#     OpenFOAM is free software; you can redistribute it and/or modify it
+#     under the terms of the GNU General Public License as published by the
+#     Free Software Foundation; either version 2 of the License, or (at your
+#     option) any later version.
+#
+#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+#     for more details.
+#
+#     You should have received a copy of the GNU General Public License
+#     along with OpenFOAM; if not, write to the Free Software Foundation,
+#     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+#
+# Script
+#     doxyClassPatch
+#
+# Description
+#     search for header files and fix up 'Class' section for doxygen
+#
+#     change:
+#     |Class
+#     |    className
+#     ->
+#     |Class
+#     |    Foam::className
+#
+#     change:
+#     |Class
+#     |
+#     ->
+#     |Class
+#     |    Foam::(basename)
+#
+#     leave untouched:
+#     |Class
+#     |    Foam...
+#     and
+#     |Class
+#     |    Namespace::className
+#
+#
+# -----------------------------------------------------------------------------
+backup=.unclassified
+remove=no
+
+for search
+do
+   for file in $(
+      find -H $search \
+         -type f -name "*.H" \
+         -exec perl -ne \
+         'if (/^Class\s*$/) { $_ = <>; /(^\s*Foam|::)/ or print "$ARGV\n"; exit 0; }' \
+         \{\} \;
+         )
+   do
+      perl -i$backup -x $0 $file
+      if [ -f $file$backup ]
+      then
+         [ $file -nt $file$backup ] && touch -r $file$backup $file
+         [ "$remove" = yes ] && /bin/rm $file$backup 2>/dev/null
+      fi
+   done
+done
+
+exit 0
+# ---------------------------------------------------------------- end-of-file
+
+# embedded Perl program
+#!/usr/bin/perl -wp
+use strict;
+
+my $namespace = "Foam::";
+( my $class = $ARGV ) =~ s{^.*/|\.[A-Za-z]$}{}g;
+
+if (/^Class\s*$/) {
+    print;
+    $_ = <>;
+
+    # provide a reasonable guess for empty classes
+    if (/^\s*$/) {
+	$_ = "    $namespace$class\n";
+        warn "modified $ARGV\n";
+    }
+    elsif ( not /(^\s*Foam|::)/ ) {
+	s{^\s+|\s*$}{}g;
+	$_ = "    $namespace$_\n";
+        warn "modified $ARGV\n";
+    }
+}
+
+# ---------------------------------------------------------------- end-of-file

bin/paraFoam.pvs

@@ -1,12 +0,0 @@
-# ParaView State Version 2.2
-
-set kw(vtkTemp2) [$Application GetMainWindow]
-set kw(vtkTemp29) [$kw(vtkTemp2) GetMainView]
-set kw(vtkTemp980) [$kw(vtkTemp2) GetAnimationManager]
-[$kw(vtkTemp2) GetRotateCameraButton] SetState 1
-$kw(vtkTemp2) ChangeInteractorStyle 1
-set kw(vtkTemp840) [$kw(vtkTemp2) InitializeReadCustom "FoamReader" "FOAM_ROOT/FOAM_CASE/FOAM_CASE.foam"]
-$kw(vtkTemp2) ReadFileInformation $kw(vtkTemp840) "FOAM_ROOT/FOAM_CASE/FOAM_CASE.foam"
-$kw(vtkTemp2) FinalizeRead $kw(vtkTemp840) "FOAM_ROOT/FOAM_CASE/FOAM_CASE.foam"
-set kw(vtkTemp868) [$kw(vtkTemp840) GetPVWidget {Filename}]
-$kw(vtkTemp868) SetValue "FOAM_ROOT/FOAM_CASE/FOAM_CASE.foam"