move reconstructPar 'guts' to src/parallel/reconstruct

- in preparation for adding an optional '-reconstruct' to a few utilities
  re-use as -lreconstruct library

- move related stuff there too
      src/decompositionMethods/decompositionMethods
      -> src/parallel/decompositionMethods

- added missing namespace qualifiers

applications/utilities/mesh/generation/snappyHexMesh/Make/options

@@ -1,6 +1,6 @@
 EXE_INC = \
     /* -g -DFULLDEBUG -O0 */ \
-    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
+    -I$(LIB_SRC)/parallel/decompositionMethods/lnInclude \
     -I$(LIB_SRC)/mesh/autoMesh/lnInclude \
     -I$(LIB_SRC)/meshTools/lnInclude \
     -I$(LIB_SRC)/triSurface/lnInclude \

applications/utilities/mesh/manipulation/renumberMesh/Make/options

@@ -2,7 +2,7 @@ EXE_INC = \
     -I$(LIB_SRC)/meshTools/lnInclude \
     -I$(LIB_SRC)/dynamicMesh/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
-    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude
+    -I$(LIB_SRC)/parallel/decompositionMethods/lnInclude
 
 EXE_LIBS = \
     -lmeshTools \

applications/utilities/parallelProcessing/decomposePar/Make/files

@@ -1,7 +1,7 @@
-decomposeMesh.C
 decomposePar.C
 domainDecomposition.C
-distributeCells.C
+domainDecompositionMesh.C
+domainDecompositionDistribute.C
 fvFieldDecomposer.C
 pointFieldDecomposer.C
 lagrangianFieldDecomposer.C

applications/utilities/parallelProcessing/decomposePar/Make/options

@@ -1,5 +1,5 @@
 EXE_INC = \
-    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
+    -I$(LIB_SRC)/parallel/decompositionMethods/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/lagrangian/basic/lnInclude \
     -I$(LIB_SRC)/meshTools/lnInclude

applications/utilities/parallelProcessing/decomposePar/decomposePar.C

@@ -106,7 +106,6 @@ int main(int argc, char *argv[])
         Info<< "Decomposing mesh " << regionName << nl << endl;
     }
 
-
     bool writeCellDist           = args.optionFound("cellDist");
     bool copyUniform             = args.optionFound("copyUniform");
     bool decomposeFieldsOnly     = args.optionFound("fields");

applications/utilities/parallelProcessing/decomposePar/domainDecomposition.C

@@ -38,7 +38,7 @@ License
 
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-void domainDecomposition::mark
+void Foam::domainDecomposition::mark
 (
     const labelList& zoneElems,
     const label zoneI,
@@ -66,7 +66,7 @@ void domainDecomposition::mark
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
 // from components
-domainDecomposition::domainDecomposition(const IOobject& io)
+Foam::domainDecomposition::domainDecomposition(const IOobject& io)
 :
     fvMesh(io),
     decompositionDict_
@@ -105,13 +105,13 @@ domainDecomposition::domainDecomposition(const IOobject& io)
 
 // * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
 
-domainDecomposition::~domainDecomposition()
+Foam::domainDecomposition::~domainDecomposition()
 {}
 
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-bool domainDecomposition::writeDecomposition()
+bool Foam::domainDecomposition::writeDecomposition()
 {
     Info<< "\nConstructing processor meshes" << endl;
 

applications/utilities/parallelProcessing/decomposePar/domainDecomposition.H

@@ -26,7 +26,7 @@ Class
     Foam::domainDecomposition
 
 Description
-    Automatic domain decomposition class for FOAM meshes
+    Automatic domain decomposition class for finite-volume meshes
 
 SourceFiles
     domainDecomposition.C
@@ -42,10 +42,8 @@ SourceFiles
 #include "PtrList.H"
 #include "point.H"
 
-#ifndef namespaceFoam
-#define namespaceFoam
-    using namespace Foam;
-#endif
+namespace Foam
+{
 
 /*---------------------------------------------------------------------------*\
                      Class domainDecomposition Declaration
@@ -165,6 +163,11 @@ public:
 };
 
 
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 #endif

applications/utilities/parallelProcessing/decomposePar/domainDecompositionDistribute.C

@@ -33,7 +33,7 @@ License
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-void domainDecomposition::distributeCells()
+void Foam::domainDecomposition::distributeCells()
 {
     Info<< "\nCalculating distribution of cells" << endl;
 

applications/utilities/parallelProcessing/decomposePar/domainDecompositionMesh.C

@@ -40,7 +40,7 @@ Description
 
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-void domainDecomposition::decomposeMesh(const bool filterEmptyPatches)
+void Foam::domainDecomposition::decomposeMesh(const bool filterEmptyPatches)
 {
     // Decide which cell goes to which processor
     distributeCells();
@@ -775,3 +775,5 @@ void domainDecomposition::decomposeMesh(const bool filterEmptyPatches)
         sort(globallySharedPoints_);
     }
 }
+
+// ************************************************************************* //

applications/utilities/parallelProcessing/decomposePar/fvFieldDecomposer.C

@@ -26,14 +26,10 @@ License
 
 #include "fvFieldDecomposer.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-fvFieldDecomposer::patchFieldDecomposer::patchFieldDecomposer
+Foam::fvFieldDecomposer::patchFieldDecomposer::patchFieldDecomposer
 (
     const unallocLabelList& addressingSlice,
     const label addressingOffset
@@ -49,7 +45,7 @@ fvFieldDecomposer::patchFieldDecomposer::patchFieldDecomposer
 }
 
 
-fvFieldDecomposer::processorVolPatchFieldDecomposer::
+Foam::fvFieldDecomposer::processorVolPatchFieldDecomposer::
 processorVolPatchFieldDecomposer
 (
     const fvMesh& mesh,
@@ -97,7 +93,7 @@ processorVolPatchFieldDecomposer
 }
 
 
-fvFieldDecomposer::processorSurfacePatchFieldDecomposer::
+Foam::fvFieldDecomposer::processorSurfacePatchFieldDecomposer::
 processorSurfacePatchFieldDecomposer
 (
     const unallocLabelList& addressingSlice
@@ -117,7 +113,7 @@ processorSurfacePatchFieldDecomposer
 }
 
 
-fvFieldDecomposer::fvFieldDecomposer
+Foam::fvFieldDecomposer::fvFieldDecomposer
 (
     const fvMesh& completeMesh,
     const fvMesh& procMesh,
@@ -187,7 +183,7 @@ fvFieldDecomposer::fvFieldDecomposer
 
 // * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
 
-fvFieldDecomposer::~fvFieldDecomposer()
+Foam::fvFieldDecomposer::~fvFieldDecomposer()
 {
     forAll(patchFieldDecomposerPtrs_, patchi)
     {
@@ -214,9 +210,4 @@ fvFieldDecomposer::~fvFieldDecomposer()
     }
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/parallelProcessing/decomposePar/fvFieldDecomposerDecomposeFields.C

@@ -28,16 +28,11 @@ License
 #include "processorFvPatchField.H"
 #include "processorFvsPatchField.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
 template<class Type>
-tmp<GeometricField<Type, fvPatchField, volMesh> >
-fvFieldDecomposer::decomposeField
+Foam::tmp<Foam::GeometricField<Type, Foam::fvPatchField, Foam::volMesh> >
+Foam::fvFieldDecomposer::decomposeField
 (
     const GeometricField<Type, fvPatchField, volMesh>& field
 ) const
@@ -106,8 +101,8 @@ fvFieldDecomposer::decomposeField
 
 
 template<class Type>
-tmp<GeometricField<Type, fvsPatchField, surfaceMesh> >
-fvFieldDecomposer::decomposeField
+Foam::tmp<Foam::GeometricField<Type, Foam::fvsPatchField, Foam::surfaceMesh> >
+Foam::fvFieldDecomposer::decomposeField
 (
     const GeometricField<Type, fvsPatchField, surfaceMesh>& field
 ) const
@@ -217,7 +212,7 @@ fvFieldDecomposer::decomposeField
 
 
 template<class GeoField>
-void fvFieldDecomposer::decomposeFields
+void Foam::fvFieldDecomposer::decomposeFields
 (
     const PtrList<GeoField>& fields
 ) const
@@ -229,8 +224,4 @@ void fvFieldDecomposer::decomposeFields
 }
 
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/parallelProcessing/decomposePar/lagrangianFieldDecomposer.C

@@ -29,16 +29,10 @@ Description
 
 #include "lagrangianFieldDecomposer.H"
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
 // Construct from components
-lagrangianFieldDecomposer::lagrangianFieldDecomposer
+Foam::lagrangianFieldDecomposer::lagrangianFieldDecomposer
 (
     const polyMesh& mesh,
     const polyMesh& procMesh,
@@ -88,6 +82,4 @@ lagrangianFieldDecomposer::lagrangianFieldDecomposer
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/parallelProcessing/decomposePar/lagrangianFieldDecomposerDecomposeFields.C

@@ -27,15 +27,10 @@ License
 #include "lagrangianFieldDecomposer.H"
 #include "IOobjectList.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
 template<class Type>
-void lagrangianFieldDecomposer::readFields
+void Foam::lagrangianFieldDecomposer::readFields
 (
     const label cloudI,
     const IOobjectList& lagrangianObjects,
@@ -70,7 +65,8 @@ void lagrangianFieldDecomposer::readFields
 
 
 template<class Type>
-tmp<IOField<Type> > lagrangianFieldDecomposer::decomposeField
+Foam::tmp<Foam::IOField<Type> >
+Foam::lagrangianFieldDecomposer::decomposeField
 (
     const word& cloudName,
     const IOField<Type>& field
@@ -100,7 +96,7 @@ tmp<IOField<Type> > lagrangianFieldDecomposer::decomposeField
 
 
 template<class GeoField>
-void lagrangianFieldDecomposer::decomposeFields
+void Foam::lagrangianFieldDecomposer::decomposeFields
 (
     const word& cloudName,
     const PtrList<GeoField>& fields
@@ -116,8 +112,4 @@ void lagrangianFieldDecomposer::decomposeFields
 }
 
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/parallelProcessing/decomposePar/pointFieldDecomposer.C

@@ -26,14 +26,9 @@ License
 
 #include "pointFieldDecomposer.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-pointFieldDecomposer::patchFieldDecomposer::patchFieldDecomposer
+Foam::pointFieldDecomposer::patchFieldDecomposer::patchFieldDecomposer
 (
     const pointPatch& completeMeshPatch,
     const pointPatch& procMeshPatch,
@@ -79,7 +74,7 @@ pointFieldDecomposer::patchFieldDecomposer::patchFieldDecomposer
 }
 
 
-pointFieldDecomposer::pointFieldDecomposer
+Foam::pointFieldDecomposer::pointFieldDecomposer
 (
     const pointMesh& completeMesh,
     const pointMesh& procMesh,
@@ -114,7 +109,7 @@ pointFieldDecomposer::pointFieldDecomposer
 
 // * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
 
-pointFieldDecomposer::~pointFieldDecomposer()
+Foam::pointFieldDecomposer::~pointFieldDecomposer()
 {
     forAll(patchFieldDecomposerPtrs_, patchi)
     {
@@ -128,6 +123,4 @@ pointFieldDecomposer::~pointFieldDecomposer()
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/parallelProcessing/decomposePar/pointFieldDecomposerDecomposeFields.C

@@ -28,16 +28,11 @@ License
 #include "processorPointPatchFields.H"
 #include "globalPointPatchFields.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
 template<class Type>
-tmp<GeometricField<Type, pointPatchField, pointMesh> >
-pointFieldDecomposer::decomposeField
+Foam::tmp<Foam::GeometricField<Type, Foam::pointPatchField, Foam::pointMesh> >
+Foam::pointFieldDecomposer::decomposeField
 (
     const GeometricField<Type, pointPatchField, pointMesh>& field
 ) const
@@ -117,7 +112,7 @@ pointFieldDecomposer::decomposeField
 
 
 template<class GeoField>
-void pointFieldDecomposer::decomposeFields
+void Foam::pointFieldDecomposer::decomposeFields
 (
     const PtrList<GeoField>& fields
 ) const
@@ -131,6 +126,4 @@ void pointFieldDecomposer::decomposeFields
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/parallelProcessing/reconstructPar/Make/files

@@ -1,7 +1,3 @@
-processorMeshes.C
-fvFieldReconstructor.C
-pointFieldReconstructor.C
-reconstructLagrangianPositions.C
 reconstructPar.C
 
 EXE = $(FOAM_APPBIN)/reconstructPar

applications/utilities/parallelProcessing/reconstructPar/Make/options

@@ -1,9 +1,11 @@
 EXE_INC = \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
-    -I$(LIB_SRC)/lagrangian/basic/lnInclude
+    -I$(LIB_SRC)/lagrangian/basic/lnInclude \
+    -I$(LIB_SRC)/parallel/reconstruct/lnInclude
 
 EXE_LIBS = \
     -lfiniteVolume \
     -lgenericPatchFields \
     -llagrangian \
-    -lmeshTools
+    -lmeshTools \
+    -lreconstruct

applications/utilities/parallelProcessing/redistributeMeshPar/Make/options

@@ -1,5 +1,5 @@
 EXE_INC = \
-    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
+    -I$(LIB_SRC)/parallel/decompositionMethods/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/meshTools/lnInclude \
     -I$(LIB_SRC)/dynamicMesh/lnInclude

applications/utilities/parallelProcessing/redistributeMeshPar/redistributeMeshPar.C

@@ -33,11 +33,11 @@ Description
     Balances mesh and writes new mesh to new time directory.
 
     Can also work like decomposePar:
-
+    @verbatim
         mkdir processor0
         cp -r constant processor0
         mpirun -np ddd redistributeMeshPar -parallel
-
+    @endverbatim
 \*---------------------------------------------------------------------------*/
 
 #include "Field.H"

applications/utilities/postProcessing/dataConversion/foamToTecplot360/Allwmake

@@ -1,6 +1,9 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 if [ "$TEC_360_2009" ]
 then
     wmake
 fi
+
+# ----------------------------------------------------------------- end-of-file

applications/utilities/postProcessing/graphics/fieldview9Reader/Allwmake

@@ -6,3 +6,5 @@
 # then
 #    wmake fieldview9Reader
 # fi
+
+# ----------------------------------------------------------------- end-of-file

applications/utilities/preProcessing/wallFunctionTable/Allwmake

@@ -1,5 +1,8 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+set -x
 
 wmake libso tabulatedWallFunction
 wmake
 
+# ----------------------------------------------------------------- end-of-file

src/Allwmake

@@ -27,7 +27,7 @@ wmake libso edgeMesh
 wmake libso surfMesh
 
 # Decomposition methods needed by meshTools
-decompositionMethods/Allwmake
+wmake libso parallel/decompositionMethods
 
 wmake libso meshTools
 wmake libso finiteVolume
@@ -46,6 +46,7 @@ thermophysicalModels/Allwmake
 transportModels/Allwmake
 turbulenceModels/Allwmake
 lagrangian/Allwmake
+parallel/Allwmake
 postProcessing/Allwmake
 conversion/Allwmake
 mesh/Allwmake

src/mesh/autoMesh/Make/options

@@ -1,5 +1,5 @@
 EXE_INC = \
-    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
+    -I$(LIB_SRC)/parallel/decompositionMethods/lnInclude \
     -I$(LIB_SRC)/dynamicMesh/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/lagrangian/basic/lnInclude \

src/meshTools/Make/options

@@ -1,6 +1,6 @@
 EXE_INC = \
     -I$(LIB_SRC)/triSurface/lnInclude \
-    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
+    -I$(LIB_SRC)/parallel/decompositionMethods/lnInclude \
     -I$(LIB_SRC)/lagrangian/basic/lnInclude
 
 LIB_LIBS = \

src/parallel/Allwmake

@@ -3,6 +3,7 @@ cd ${0%/*} || exit 1    # run from this directory
 set -x
 
 wmake libso decompositionMethods
+wmake libso reconstruct
 
 if [ -d "$FOAM_MPI_LIBBIN" ]
 then

src/parallel/reconstruct/Make/files

@@ -0,0 +1,6 @@
+processorMeshes.C
+fvFieldReconstructor.C
+pointFieldReconstructor.C
+reconstructLagrangianPositions.C
+
+LIB = $(FOAM_LIBBIN)/libreconstruct

src/parallel/reconstruct/Make/options

@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/lagrangian/basic/lnInclude
+
+LIB_LIBS = \
+    -lfiniteVolume \
+    -llagrangian

src/parallel/reconstruct/fvFieldReconstructor.H

@@ -26,7 +26,7 @@ Class
     Foam::fvFieldReconstructor
 
 Description
-    FV volume and surface field reconstructor.
+    Finite volume reconstructor for volume and surface fields.
 
 SourceFiles
     fvFieldReconstructor.C

src/parallel/reconstruct/pointFieldReconstructor.H

@@ -73,10 +73,7 @@ class pointFieldReconstructor
     // Private Member Functions
 
         //- Disallow default bitwise copy construct
-        pointFieldReconstructor
-        (
-            const pointFieldReconstructor&
-        );
+        pointFieldReconstructor(const pointFieldReconstructor&);
 
         //- Disallow default bitwise assignment
         void operator=(const pointFieldReconstructor&);

src/parallel/reconstruct/processorMeshes.C

@@ -127,8 +127,8 @@ Foam::processorMeshes::processorMeshes
     const word& meshName
 )
 :
-    databases_(databases),
     meshName_(meshName),
+    databases_(databases),
     meshes_(databases.size()),
     pointProcAddressing_(databases.size()),
     faceProcAddressing_(databases.size()),
@@ -165,9 +165,7 @@ Foam::fvMesh::readUpdateState Foam::processorMeshes::readUpdate()
         {
             stat = procStat;
         }
-        else
-        {
-            if (stat != procStat)
+        else if (stat != procStat)
         {
             FatalErrorIn("processorMeshes::readUpdate()")
                 << "Processor " << procI
@@ -180,7 +178,6 @@ Foam::fvMesh::readUpdateState Foam::processorMeshes::readUpdate()
                 << exit(FatalError);
         }
     }
-    }
 
     if
     (

src/parallel/reconstruct/processorMeshes.H

@@ -55,11 +55,11 @@ class processorMeshes
 {
     // Private data
 
+        const word meshName_;
+
         //- Processor databases
         PtrList<Time>& databases_;
 
-        const word meshName_;
-
         //- List of processor meshes
         PtrList<fvMesh> meshes_;
 
@@ -98,29 +98,32 @@ public:
 
     // Member Functions
 
-        //- Update the meshes based on the mesh files saved in
-        //  time directories
+        //- Update the meshes based on the mesh files saved in time directories
         fvMesh::readUpdateState readUpdate();
 
         //- Reconstruct point position after motion in parallel
-        void reconstructPoints(fvMesh& mesh);
+        void reconstructPoints(fvMesh&);
 
         PtrList<fvMesh>& meshes()
         {
             return meshes_;
         }
+
         const PtrList<labelIOList>& pointProcAddressing() const
         {
             return pointProcAddressing_;
         }
+
         PtrList<labelIOList>& faceProcAddressing()
         {
             return faceProcAddressing_;
         }
+
         const PtrList<labelIOList>& cellProcAddressing() const
         {
             return cellProcAddressing_;
         }
+
         const PtrList<labelIOList>& boundaryProcAddressing() const
         {
             return boundaryProcAddressing_;