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Merge branch 'master' into AMI

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This commit is contained in:
andy
2011-08-24 09:31:13 +01:00
parent ca367eed16 24a82f2d03
commit 3a82e6b5df
20 changed files with 241 additions and 101 deletions
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2
bin/tools/pre-commit-hook
View File

@ -273,7 +273,7 @@ checkCopyright()
for f in $fileList
do
sYear=`grep "Copyright.*OpenFOAM" $f | sed 's/[^0-9]//g' | cut -c 5-9`
sYear=`grep "Copyright.*OpenFOAM" $f | sed 's/[^0-9]//g'`
if [ "$year" != "" ] && [ "$year" != "$sYear" ]; then
echo "Updated copyright for: $f"
sed -i "s/$sYear OpenFOAM/$year OpenFOAM/g" $f

12
src/OpenFOAM/fields/pointPatchFields/pointPatchField/pointPatchFieldNew.C
View File

@ -1,25 +1,25 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / F ield |2011 OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
This file is part of2011 OpenFOAM.
OpenFOAM is free software: you can redistribute it and/or modify it
2011 OpenFOAM is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
2011 OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
along with2011 OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
\*---------------------------------------------------------------------------*/
@ -169,7 +169,7 @@ Foam::autoPtr<Foam::pointPatchField<Type> > Foam::pointPatchField<Type>::New
typename dictionaryConstructorTable::iterator patchTypeCstrIter
= dictionaryConstructorTablePtr_->find(p.type());
if (patchTypeCstrIter == pointPatchConstructorTablePtr_->end())
if (patchTypeCstrIter == dictionaryConstructorTablePtr_->end())
{
FatalIOErrorIn
(

2
src/OpenFOAM/meshes/primitiveMesh/primitiveMesh.C
View File

@ -375,7 +375,7 @@ Foam::primitiveMesh::cellTree() const
overallBb,
8, // maxLevel
10, // leafsize
3.0 // duplicity
5.0 // duplicity
);
}

4
src/lagrangian/basic/InteractionLists/InteractionLists.C
View File

@ -167,7 +167,7 @@ void Foam::InteractionLists<ParticleType>::buildInteractionLists()
procBbRndExt,
8, // maxLevel,
10, // leafSize,
100.0
100.0 // duplicity
);
ril_.setSize(cellBbsToExchange.size());
@ -386,7 +386,7 @@ void Foam::InteractionLists<ParticleType>::buildInteractionLists()
procBbRndExt,
8, // maxLevel,
10, // leafSize,
100.0
100.0 // duplicity
);
rwfil_.setSize(wallFaceBbsToExchange.size());

57
src/meshTools/meshSearch/meshSearch.C
View File

@ -30,7 +30,6 @@ License
#include "demandDrivenData.H"
#include "treeDataCell.H"
#include "treeDataFace.H"
#include "treeDataPoint.H"
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
@ -508,6 +507,21 @@ Foam::meshSearch::meshSearch(const polyMesh& mesh, const bool faceDecomp)
{}
// Construct with a custom bounding box
Foam::meshSearch::meshSearch
(
const polyMesh& mesh,
const treeBoundBox& bb,
const bool faceDecomp
)
:
mesh_(mesh),
faceDecomp_(faceDecomp)
{
overallBbPtr_.reset(new treeBoundBox(bb));
}
// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
Foam::meshSearch::~meshSearch()
@ -527,6 +541,21 @@ const Foam::indexedOctree<Foam::treeDataFace>& Foam::meshSearch::boundaryTree()
// Construct tree
//
if (!overallBbPtr_.valid())
{
Random rndGen(261782);
overallBbPtr_.reset
(
new treeBoundBox(mesh_.points())
);
treeBoundBox& overallBb = overallBbPtr_();
// Extend slightly and make 3D
overallBb = overallBb.extend(rndGen, 1E-4);
overallBb.min() -= point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
overallBb.max() += point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
}
// all boundary faces (not just walls)
labelList bndFaces(mesh_.nFaces()-mesh_.nInternalFaces());
forAll(bndFaces, i)
@ -534,12 +563,6 @@ const Foam::indexedOctree<Foam::treeDataFace>& Foam::meshSearch::boundaryTree()
bndFaces[i] = mesh_.nInternalFaces() + i;
}
treeBoundBox overallBb(mesh_.points());
Random rndGen(123456);
overallBb = overallBb.extend(rndGen, 1E-4);
overallBb.min() -= point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
overallBb.max() += point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
boundaryTreePtr_.reset
(
new indexedOctree<treeDataFace>
@ -550,7 +573,7 @@ const Foam::indexedOctree<Foam::treeDataFace>& Foam::meshSearch::boundaryTree()
mesh_,
bndFaces // boundary faces only
),
overallBb, // overall search domain
overallBbPtr_(), // overall search domain
8, // maxLevel
10, // leafsize
3.0 // duplicity
@ -567,13 +590,24 @@ const
{
if (!cellTreePtr_.valid())
{
treeBoundBox overallBb(mesh_.points());
//
// Construct tree
//
if (!overallBbPtr_.valid())
{
Random rndGen(261782);
overallBbPtr_.reset
(
new treeBoundBox(mesh_.points())
);
treeBoundBox& overallBb = overallBbPtr_();
// Extend slightly and make 3D
overallBb = overallBb.extend(rndGen, 1E-4);
overallBb.min() -= point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
overallBb.max() += point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
}
cellTreePtr_.reset
(
@ -584,10 +618,10 @@ const
false, // not cache bb
mesh_
),
overallBb,
overallBbPtr_(),
8, // maxLevel
10, // leafsize
3.0 // duplicity
6.0 // duplicity
)
);
}
@ -904,6 +938,7 @@ void Foam::meshSearch::clearOut()
{
boundaryTreePtr_.clear();
cellTreePtr_.clear();
overallBbPtr_.clear();
}

17
src/meshTools/meshSearch/meshSearch.H
View File

@ -49,6 +49,7 @@ class polyMesh;
class treeDataCell;
class treeDataFace;
template<class Type> class indexedOctree;
class treeBoundBox;
/*---------------------------------------------------------------------------*\
Class meshSearch Declaration
@ -64,8 +65,10 @@ class meshSearch
//- Whether to use face decomposition for all geometric tests
const bool faceDecomp_;
//- demand driven octrees
//- data bounding box
mutable autoPtr<treeBoundBox> overallBbPtr_;
//- demand driven octrees
mutable autoPtr<indexedOctree<treeDataFace> > boundaryTreePtr_;
mutable autoPtr<indexedOctree<treeDataCell> > cellTreePtr_;
@ -163,9 +166,19 @@ public:
// Constructors
//- Construct from components
//- Construct from components. Constructs bb slightly bigger than
// mesh points bb.
meshSearch(const polyMesh& mesh, const bool faceDecomp = true);
//- Construct with a custom bounding box. Any mesh element outside
// bb will not be found. Up to user to make sure bb
// extends slightly beyond wanted elements.
meshSearch
(
const polyMesh& mesh,
const treeBoundBox& bb,
const bool faceDecomp = true
);
//- Destructor
~meshSearch();

2
src/postProcessing/functionObjects/field/fieldAverage/controlDict
View File

@ -68,6 +68,7 @@ functions
mean on;
prime2Mean on;
base time;
window 0.01; // optional averaging window
}
p
@ -75,6 +76,7 @@ functions
mean on;
prime2Mean on;
base time;
window 0.01; // optional averaging window
}
);
}

3
src/postProcessing/functionObjects/field/fieldAverage/fieldAverage/fieldAverage.C
View File

@ -377,8 +377,7 @@ void Foam::fieldAverage::execute()
void Foam::fieldAverage::end()
{
}
{}
void Foam::fieldAverage::write()

50
src/postProcessing/functionObjects/field/fieldAverage/fieldAverage/fieldAverageTemplates.C
View File

@ -149,7 +149,7 @@ const
{
typedef GeometricField<Type, fvPatchField, volMesh> fieldType;
const scalar dt = obr_.time().deltaTValue();
scalar dt = obr_.time().deltaTValue();
forAll(faItems_, i)
{
@ -163,17 +163,24 @@ const
obr_.lookupObject<fieldType>(meanFieldList[i])
);
scalar alpha = 0.0;
scalar beta = 0.0;
if (faItems_[i].timeBase())
scalar Dt = totalTime_[i];
if (faItems_[i].iterBase())
{
alpha = (totalTime_[i] - dt)/totalTime_[i];
beta = dt/totalTime_[i];
dt = 1.0;
Dt = scalar(totalIter_[i]);
}
else
scalar alpha = (Dt - dt)/Dt;
scalar beta = dt/Dt;
if (faItems_[i].window() > 0)
{
alpha = scalar(totalIter_[i] - 1)/scalar(totalIter_[i]);
beta = 1.0/scalar(totalIter_[i]);
const scalar w = faItems_[i].window();
if (Dt - dt >= w)
{
alpha = (w - dt)/w;
beta = dt/w;
}
}
meanField = alpha*meanField + beta*baseField;
@ -192,7 +199,7 @@ void Foam::fieldAverage::calculatePrime2MeanFields
typedef GeometricField<Type1, fvPatchField, volMesh> fieldType1;
typedef GeometricField<Type2, fvPatchField, volMesh> fieldType2;
const scalar dt = obr_.time().deltaTValue();
scalar dt = obr_.time().deltaTValue();
forAll(faItems_, i)
{
@ -213,17 +220,24 @@ void Foam::fieldAverage::calculatePrime2MeanFields
obr_.lookupObject<fieldType2>(prime2MeanFieldList[i])
);
scalar alpha = 0.0;
scalar beta = 0.0;
if (faItems_[i].timeBase())
scalar Dt = totalTime_[i];
if (faItems_[i].iterBase())
{
alpha = (totalTime_[i] - dt)/totalTime_[i];
beta = dt/totalTime_[i];
dt = 1.0;
Dt = scalar(totalIter_[i]);
}
else
scalar alpha = (Dt - dt)/Dt;
scalar beta = dt/Dt;
if (faItems_[i].window() > 0)
{
alpha = scalar(totalIter_[i] - 1)/scalar(totalIter_[i]);
beta = 1.0/scalar(totalIter_[i]);
const scalar w = faItems_[i].window();
if (Dt - dt >= w)
{
alpha = (w - dt)/w;
beta = dt/w;
}
}
prime2MeanField =

7
src/postProcessing/functionObjects/field/fieldAverage/fieldAverageItem/fieldAverageItem.C
View File

@ -53,7 +53,8 @@ Foam::fieldAverageItem::fieldAverageItem()
fieldName_("unknown"),
mean_(0),
prime2Mean_(0),
base_(ITER)
base_(ITER),
window_(-1.0)
{}
@ -62,7 +63,8 @@ Foam::fieldAverageItem::fieldAverageItem(const fieldAverageItem& faItem)
fieldName_(faItem.fieldName_),
mean_(faItem.mean_),
prime2Mean_(faItem.prime2Mean_),
base_(faItem.base_)
base_(faItem.base_),
window_(faItem.window_)
{}
@ -91,6 +93,7 @@ void Foam::fieldAverageItem::operator=(const fieldAverageItem& rhs)
mean_ = rhs.mean_;
prime2Mean_ = rhs.prime2Mean_;
base_ = rhs.base_;
window_ = rhs.window_;
}

17
src/postProcessing/functionObjects/field/fieldAverage/fieldAverageItem/fieldAverageItem.H
View File

@ -33,9 +33,13 @@ Description
mean on;
prime2Mean on;
base time; // iteration
window 200; // optional averaging window
}
\endverbatim
The averaging window corresponds to the averaging interval (iters or time)
If not specified, the averaging is over 'all iters/time'
SourceFiles
fieldAverageItem.C
fieldAverageItemIO.C
@ -100,6 +104,9 @@ private:
//- Averaging base type
baseType base_;
//- Averaging window - defaults to -1 for 'all iters/time'
scalar window_;
public:
@ -148,7 +155,7 @@ public:
}
//- Return true if base is ITER
Switch ITERBase() const
Switch iterBase() const
{
return base_ == ITER;
}
@ -159,6 +166,11 @@ public:
return base_ == TIME;
}
scalar window() const
{
return window_;
}
// Member Operators
@ -177,7 +189,8 @@ public:
a.fieldName_ == b.fieldName_
&& a.mean_ == b.mean_
&& a.prime2Mean_ == b.prime2Mean_
&& a.base_ == b.base_;
&& a.base_ == b.base_
&& a.window_ == b.window_;
}
friend bool operator!=

16
src/postProcessing/functionObjects/field/fieldAverage/fieldAverageItem/fieldAverageItemIO.C
View File

@ -33,7 +33,9 @@ Foam::fieldAverageItem::fieldAverageItem(Istream& is)
:
fieldName_("unknown"),
mean_(0),
prime2Mean_(0)
prime2Mean_(0),
base_(ITER),
window_(-1.0)
{
is.check("Foam::fieldAverageItem::fieldAverageItem(Foam::Istream&)");
@ -43,6 +45,7 @@ Foam::fieldAverageItem::fieldAverageItem(Istream& is)
entry.lookup("mean") >> mean_;
entry.lookup("prime2Mean") >> prime2Mean_;
base_ = baseTypeNames_[entry.lookup("base")];
window_ = entry.lookupOrDefault<scalar>("window", -1.0);
}
@ -62,6 +65,7 @@ Foam::Istream& Foam::operator>>(Istream& is, fieldAverageItem& faItem)
entry.lookup("mean") >> faItem.mean_;
entry.lookup("prime2Mean") >> faItem.prime2Mean_;
faItem.base_ = faItem.baseTypeNames_[entry.lookup("base")];
faItem.window_ = entry.lookupOrDefault<scalar>("window", -1.0);
return is;
}
@ -80,7 +84,15 @@ Foam::Ostream& Foam::operator<<(Ostream& os, const fieldAverageItem& faItem)
os.writeKeyword("prime2Mean") << faItem.mean_
<< token::END_STATEMENT << nl;
os.writeKeyword("base") << faItem.baseTypeNames_[faItem.base_]
<< token::END_STATEMENT << nl << token::END_BLOCK << nl;
<< token::END_STATEMENT << nl;
if (faItem.window_ > 0)
{
os.writeKeyword("window") << faItem.window_
<< token::END_STATEMENT << nl;
}
os << token::END_BLOCK << nl;
os.check
(

15
src/postProcessing/functionObjects/field/fieldValues/cellSource/cellSource.C
View File

@ -145,23 +145,8 @@ void Foam::fieldValues::cellSource::initialise(const dictionary& dict)
if (operation_ == opWeightedAverage)
{
dict.lookup("weightField") >> weightFieldName_;
if
(
obr().foundObject<volScalarField>(weightFieldName_)
)
{
Info<< " weight field = " << weightFieldName_;
}
else
{
FatalErrorIn("cellSource::initialise()")
<< type() << " " << name_ << ": "
<< sourceTypeNames_[source_] << "(" << sourceName_ << "):"
<< nl << " Weight field " << weightFieldName_
<< " must be a " << volScalarField::typeName
<< nl << exit(FatalError);
}
}
Info<< nl << endl;
}

3
src/postProcessing/functionObjects/field/fieldValues/cellSource/cellSource.H
View File

@ -157,7 +157,8 @@ protected:
template<class Type>
tmp<Field<Type> > setFieldValues
(
const word& fieldName
const word& fieldName,
const bool mustGet = false
) const;
//- Apply the 'operation' to the values

25
src/postProcessing/functionObjects/field/fieldValues/cellSource/cellSourceTemplates.C
View File

@ -45,7 +45,8 @@ bool Foam::fieldValues::cellSource::validField(const word& fieldName) const
template<class Type>
Foam::tmp<Foam::Field<Type> > Foam::fieldValues::cellSource::setFieldValues
(
const word& fieldName
const word& fieldName,
const bool mustGet
) const
{
typedef GeometricField<Type, fvPatchField, volMesh> vf;
@ -55,6 +56,20 @@ Foam::tmp<Foam::Field<Type> > Foam::fieldValues::cellSource::setFieldValues
return filterField(obr_.lookupObject<vf>(fieldName));
}
if (mustGet)
{
FatalErrorIn
(
"Foam::tmp<Foam::Field<Type> > "
"Foam::fieldValues::cellSource::setFieldValues"
"("
"const word&, "
"const bool"
") const"
) << "Field " << fieldName << " not found in database"
<< abort(FatalError);
}
return tmp<Field<Type> >(new Field<Type>(0.0));
}
@ -125,7 +140,13 @@ bool Foam::fieldValues::cellSource::writeValues(const word& fieldName)
scalarField V(filterField(mesh().V()));
combineFields(V);
scalarField weightField(setFieldValues<scalar>(weightFieldName_));
scalarField weightField;
if (operation_ == opWeightedAverage)
{
weightField = setFieldValues<scalar>(weightFieldName_, true);
}
combineFields(weightField);
if (Pstream::master())

16
src/postProcessing/functionObjects/field/fieldValues/faceSource/faceSource.C
View File

@ -284,24 +284,8 @@ void Foam::fieldValues::faceSource::initialise(const dictionary& dict)
if (operation_ == opWeightedAverage)
{
dict.lookup("weightField") >> weightFieldName_;
if
(
obr().foundObject<volScalarField>(weightFieldName_)
|| obr().foundObject<surfaceScalarField>(weightFieldName_)
)
{
Info<< " weight field = " << weightFieldName_;
}
else
{
FatalErrorIn("faceSource::initialise()")
<< type() << " " << name_ << ": "
<< sourceTypeNames_[source_] << "(" << sourceName_ << "):"
<< nl << " Weight field " << weightFieldName_
<< " must be either a " << volScalarField::typeName << " or "
<< surfaceScalarField::typeName << nl << exit(FatalError);
}
}
Info<< nl << endl;
}

6
src/postProcessing/functionObjects/field/fieldValues/faceSource/faceSource.H
View File

@ -200,7 +200,11 @@ protected:
//- Return field values by looking up field name
template<class Type>
tmp<Field<Type> > getFieldValues(const word& fieldName) const;
tmp<Field<Type> > getFieldValues
(
const word& fieldName,
const bool mustGet = false
) const;
//- Apply the 'operation' to the values
template<class Type>

25
src/postProcessing/functionObjects/field/fieldValues/faceSource/faceSourceTemplates.C
View File

@ -52,7 +52,8 @@ bool Foam::fieldValues::faceSource::validField(const word& fieldName) const
template<class Type>
Foam::tmp<Foam::Field<Type> > Foam::fieldValues::faceSource::getFieldValues
(
const word& fieldName
const word& fieldName,
const bool mustGet
) const
{
typedef GeometricField<Type, fvsPatchField, surfaceMesh> sf;
@ -74,6 +75,20 @@ Foam::tmp<Foam::Field<Type> > Foam::fieldValues::faceSource::getFieldValues
}
}
if (mustGet)
{
FatalErrorIn
(
"Foam::tmp<Foam::Field<Type> > "
"Foam::fieldValues::faceSource::getFieldValues"
"("
"const word&, "
"const bool"
") const"
) << "Field " << fieldName << " not found in database"
<< abort(FatalError);
}
return tmp<Field<Type> >(new Field<Type>(0));
}
@ -139,7 +154,13 @@ bool Foam::fieldValues::faceSource::writeValues(const word& fieldName)
if (ok)
{
Field<Type> values(getFieldValues<Type>(fieldName));
scalarField weightField(getFieldValues<scalar>(weightFieldName_));
scalarField weightField;
if (operation_ == opWeightedAverage)
{
weightField = getFieldValues<scalar>(weightFieldName_, true);
}
scalarField magSf;
if (surfacePtr_.valid())

2
src/sampling/meshToMeshInterpolation/meshToMesh/calculateMeshToMeshAddressing.C
View File

@ -106,7 +106,7 @@ void Foam::meshToMesh::calcAddressing()
shiftedBb, // overall bounding box
8, // maxLevel
10, // leafsize
3.0 // duplicity
6.0 // duplicity
);
if (debug)

49
src/sampling/sampledSet/sampledSet/sampledSet.C
View File

@ -28,6 +28,7 @@ License
#include "primitiveMesh.H"
#include "meshSearch.H"
#include "writer.H"
#include "particle.H"
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
@ -183,26 +184,58 @@ Foam::point Foam::sampledSet::pushIn
) const
{
label cellI = mesh().faceOwner()[faceI];
const point& cC = mesh().cellCentres()[cellI];
const point& cellCtr = mesh().cellCentres()[cellI];
point newPosition = facePt;
point newSample =
facePt + tol*(cellCtr - facePt);
// Taken from particle::initCellFacePt()
label tetFaceI;
label tetPtI;
mesh().findTetFacePt(cellI, facePt, tetFaceI, tetPtI);
if (!searchEngine().pointInCell(newSample, cellI))
if (tetFaceI == -1 || tetPtI == -1)
{
newPosition = facePt;
label trap(1.0/particle::trackingCorrectionTol + 1);
label iterNo = 0;
do
{
newPosition += particle::trackingCorrectionTol*(cC - facePt);
mesh().findTetFacePt
(
cellI,
newPosition,
tetFaceI,
tetPtI
);
iterNo++;
} while (tetFaceI < 0 && iterNo <= trap);
}
if (tetFaceI == -1)
{
FatalErrorIn
(
"sampledSet::pushIn(const point&, const label)"
) << "After pushing " << facePt << " to " << newSample
<< " it is still outside faceI " << faceI << endl
) << "After pushing " << facePt << " to " << newPosition
<< " it is still outside face " << faceI
<< " at " << mesh().faceCentres()[faceI]
<< " of cell " << cellI
<< " at " << cC << endl
<< "Please change your starting point"
<< abort(FatalError);
}
//Info<< "pushIn : moved " << facePt << " to " << newSample
//Info<< "pushIn : moved " << facePt << " to " << newPosition
// << endl;
return newSample;
return newPosition;
}