Sprucing up the tutorials folder and adding -dict to "collapseEdges"

Patch provided by Bruno Santos
Resolves patch application request http://www.openfoam.org/mantisbt/view.php?id=2015

tutorials/incompressible/boundaryFoam/boundaryWallFunctionsProfile/Allrun

@@ -17,15 +17,11 @@ do
     sed "s/XXX/$e/g" constant/transportProperties.template \
         > constant/transportProperties
 
-    runApplication `getApplication`
-
-    mv log.boundaryFoam log.boundaryFoam_$e
+    runApplication -s $e  `getApplication`
 
     # extract y+, U+
     # note: both must be added to foamLog.db
-    runApplication foamLog log.boundaryFoam_$e
-
-    mv log.foamLog log.foamLog_$e
+    runApplication -s $e  foamLog log.boundaryFoam.$e
 
     if [ -e logs/yPlus_0 ]
     then

tutorials/incompressible/porousSimpleFoam/straightDuctImplicit/Allrun.pre

@@ -9,13 +9,14 @@ runApplication surfaceFeatureExtract
 runApplication foamyHexMesh
 
 # Collapse only patch faces from incomplete conformation
-cp system/collapseDict.indirectPatchFaces system/collapseDict
-runApplication collapseEdges -collapseFaceSet indirectPatchFaces -latestTime -overwrite
-mv log.collapseEdges log.collapseEdges-indirectPatchFaces
+runApplication -s indirectPatchFaces \
+    collapseEdges -collapseFaceSet indirectPatchFaces -latestTime -overwrite \
+                  -dict system/collapseDict.indirectPatchFaces
 
 # Collapse small edges and sliver faces
-cp system/collapseDict.collapseFaces system/collapseDict
-runApplication collapseEdges -collapseFaces -latestTime -overwrite
+runApplication -s collapseFaces \
+    collapseEdges -collapseFaces -latestTime -overwrite \
+                  -dict system/collapseDict.collapseFaces
 
 runApplication checkMesh -allTopology -allGeometry -latestTime