Merge branch 'master' of /home/dm4/OpenFOAM/OpenFOAM-dev

applications/utilities/mesh/manipulation/checkMesh/checkGeometry.C

@@ -273,73 +273,165 @@ bool Foam::checkCoupledPoints
     const faceList& fcs = mesh.faces();
     const polyBoundaryMesh& patches = mesh.boundaryMesh();
 
-    // Zero'th point on coupled faces
+    // Check size of faces
-    pointField nbrZeroPoint(fcs.size()-mesh.nInternalFaces(), vector::max);
+    label maxSize = 0;
-
-    // Exchange zero point
-    forAll(patches, patchI)
     {
-        if (patches[patchI].coupled())
+        labelList nbrSize(fcs.size()-mesh.nInternalFaces(), 0);
+
+        // Exchange size
+        forAll(patches, patchI)
         {
-            const coupledPolyPatch& cpp = refCast<const coupledPolyPatch>
+            if (patches[patchI].coupled())
-            (
-                patches[patchI]
-            );
-
-            forAll(cpp, i)
             {
-                label bFaceI = cpp.start()+i-mesh.nInternalFaces();
+                const coupledPolyPatch& cpp = refCast<const coupledPolyPatch>
-                const point& p0 = p[cpp[i][0]];
-                nbrZeroPoint[bFaceI] = p0;
-            }
-        }
-    }
-    syncTools::swapBoundaryFacePositions(mesh, nbrZeroPoint);
-
-    // Compare to local ones. Use same tolerance as for matching
-    label nErrorFaces = 0;
-    scalar avgMismatch = 0;
-    label nCoupledFaces = 0;
-
-    forAll(patches, patchI)
-    {
-        if (patches[patchI].coupled())
-        {
-            const coupledPolyPatch& cpp = refCast<const coupledPolyPatch>
-            (
-                patches[patchI]
-            );
-
-            if (cpp.owner())
-            {
-                scalarField smallDist
                 (
-                    cpp.calcFaceTol
+                    patches[patchI]
-                    (
-                        //cpp.matchTolerance(),
-                        cpp,
-                        cpp.points(),
-                        cpp.faceCentres()
-                    )
                 );
 
                 forAll(cpp, i)
                 {
                     label bFaceI = cpp.start()+i-mesh.nInternalFaces();
-                    const point& p0 = p[cpp[i][0]];
+                    nbrSize[bFaceI] = cpp[i].size();
+                    maxSize = max(maxSize, cpp[i].size());
+                }
+            }
+        }
+        syncTools::swapBoundaryFaceList(mesh, nbrSize);
 
-                    scalar d = mag(p0 - nbrZeroPoint[bFaceI]);
 
-                    if (d > smallDist[i])
+        // Check on owner
+        label nErrorFaces = 0;
+        forAll(patches, patchI)
+        {
+            if (patches[patchI].coupled())
+            {
+                const coupledPolyPatch& cpp = refCast<const coupledPolyPatch>
+                (
+                    patches[patchI]
+                );
+
+                if (cpp.owner())
+                {
+                    forAll(cpp, i)
                     {
-                        if (setPtr)
+                        label bFaceI = cpp.start()+i-mesh.nInternalFaces();
+
+                        if (cpp[i].size() != nbrSize[bFaceI])
                         {
-                            setPtr->insert(cpp.start()+i);
+                            if (setPtr)
+                            {
+                                setPtr->insert(cpp.start()+i);
+                            }
+                            nErrorFaces++;
+                        }
+                    }
+                }
+            }
+        }
+
+        reduce(nErrorFaces, sumOp<label>());
+        if (nErrorFaces > 0)
+        {
+            if (report)
+            {
+                Info<< "  **Error in coupled faces: "
+                    << nErrorFaces
+                    << " faces have different size "
+                    << " compared to their coupled equivalent." << endl;
+            }
+            return true;
+        }
+
+        reduce(maxSize, maxOp<label>());
+    }
+
+
+    label nErrorFaces = 0;
+    scalar avgMismatch = 0;
+    label nCoupledPoints = 0;
+
+    for (label index = 0; index < maxSize; index++)
+    {
+        // point at index on coupled faces
+        pointField nbrPoint(fcs.size()-mesh.nInternalFaces(), vector::max);
+
+        // Exchange point
+        forAll(patches, patchI)
+        {
+            if (patches[patchI].coupled())
+            {
+                const coupledPolyPatch& cpp = refCast<const coupledPolyPatch>
+                (
+                    patches[patchI]
+                );
+
+                forAll(cpp, i)
+                {
+                    const face& f = cpp[i];
+                    if (f.size() > index)
+                    {
+                        label bFaceI = cpp.start()+i-mesh.nInternalFaces();
+                        nbrPoint[bFaceI] = p[f[index]];
+                    }
+                }
+            }
+        }
+        syncTools::swapBoundaryFacePositions(mesh, nbrPoint);
+
+
+        // Compare to local ones. Use same tolerance as for matching
+
+        forAll(patches, patchI)
+        {
+            if (patches[patchI].coupled())
+            {
+                const coupledPolyPatch& cpp = refCast<const coupledPolyPatch>
+                (
+                    patches[patchI]
+                );
+
+                if (cpp.owner())
+                {
+                    scalarField smallDist
+                    (
+                        cpp.calcFaceTol
+                        (
+                            //cpp.matchTolerance(),
+                            cpp,
+                            cpp.points(),
+                            cpp.faceCentres()
+                        )
+                    );
+
+                    forAll(cpp, i)
+                    {
+                        const face& f = cpp[i];
+                        if (f.size() > index)
+                        {
+                            label bFaceI = cpp.start()+i-mesh.nInternalFaces();
+                            label reverseIndex = (f.size()-index)%f.size();
+                            scalar d = mag(p[f[reverseIndex]]-nbrPoint[bFaceI]);
+
+                            if (d > smallDist[i])
+                            {
+                                if (setPtr)
+                                {
+                                    // Avoid duplicate counting of faces
+                                    if (setPtr->insert(cpp.start()+i))
+                                    {
+                                        nErrorFaces++;
+                                    }
+                                }
+                                else
+                                {
+                                    // No checking on duplicates
+                                    nErrorFaces++;
+                                }
+                            }
+                            avgMismatch += d;
+                            nCoupledPoints++;
                         }
-                        nErrorFaces++;
                     }
-                    avgMismatch += d;
-                    nCoupledFaces++;
                 }
             }
         }
@@ -347,11 +439,11 @@ bool Foam::checkCoupledPoints
 
     reduce(nErrorFaces, sumOp<label>());
     reduce(avgMismatch, maxOp<scalar>());
-    reduce(nCoupledFaces, sumOp<label>());
+    reduce(nCoupledPoints, sumOp<label>());
 
-    if (nCoupledFaces > 0)
+    if (nCoupledPoints > 0)
     {
-        avgMismatch /= nCoupledFaces;
+        avgMismatch /= nCoupledPoints;
     }
 
     if (nErrorFaces > 0)
@@ -360,7 +452,7 @@ bool Foam::checkCoupledPoints
         {
             Info<< "  **Error in coupled point location: "
                 << nErrorFaces
-                << " faces have their 0th vertex not opposite"
+                << " faces have their 0th or consecutive vertex not opposite"
                 << " their coupled equivalent. Average mismatch "
                 << avgMismatch << "."
                 << endl;
@@ -581,7 +673,8 @@ Foam::label Foam::checkGeometry(const polyMesh& mesh, const bool allGeometry)
             if (nFaces > 0)
             {
                 Info<< "  <<Writing " << nFaces
-                    << " faces with incorrectly matched 0th vertex to set "
+                    << " faces with incorrectly matched 0th (or consecutive)"
+                    << " vertex to set "
                     << faces.name() << endl;
                 faces.instance() = mesh.pointsInstance();
                 faces.write();

applications/utilities/mesh/manipulation/moveDynamicMesh/Make/options

@@ -1,9 +1,11 @@
 EXE_INC = \
     -I$(LIB_SRC)/dynamicFvMesh/lnInclude \
     -I$(LIB_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/sampling/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude
 
 EXE_LIBS = \
     -ldynamicFvMesh \
     -lmeshTools \
+    -lsampling \
     -ldynamicMesh

applications/utilities/mesh/manipulation/moveDynamicMesh/moveDynamicMesh.C

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -32,19 +32,98 @@ Description
 #include "argList.H"
 #include "Time.H"
 #include "dynamicFvMesh.H"
+#include "vtkSurfaceWriter.H"
+#include "cyclicAMIPolyPatch.H"
 
 using namespace Foam;
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+// Dump patch + weights to vtk file
+void writeWeights
+(
+    const scalarField& wghtSum,
+    const primitivePatch& patch,
+    const fileName& folder,
+    const fileName& prefix,
+    const word& timeName
+)
+{
+    vtkSurfaceWriter writer;
+
+    writer.write
+    (
+        folder,
+        prefix + "_proc" + Foam::name(Pstream::myProcNo()) + "_" + timeName,
+        patch.localPoints(),
+        patch.localFaces(),
+        "weightsSum",
+        wghtSum,
+        false
+    );
+}
+
+
+void writeWeights(const polyMesh& mesh)
+{
+    const polyBoundaryMesh& pbm = mesh.boundaryMesh();
+
+    const word tmName(mesh.time().timeName());
+
+    forAll(pbm, patchI)
+    {
+        if (isA<cyclicAMIPolyPatch>(pbm[patchI]))
+        {
+            const cyclicAMIPolyPatch& cpp =
+                refCast<const cyclicAMIPolyPatch>(pbm[patchI]);
+
+            if (cpp.owner())
+            {
+                const AMIPatchToPatchInterpolation& ami =
+                    cpp.AMI();
+                writeWeights
+                (
+                    ami.tgtWeightsSum(),
+                    cpp.neighbPatch(),
+                    "output",
+                    "tgt",
+                    tmName
+                );
+                writeWeights
+                (
+                    ami.srcWeightsSum(),
+                    cpp,
+                    "output",
+                    "src",
+                    tmName
+                );
+            }
+        }
+    }
+}
+
+
 // Main program:
 
 int main(int argc, char *argv[])
 {
+    argList::addBoolOption
+    (
+        "checkAMI",
+        "check AMI weights"
+    );
 
 #   include "setRootCase.H"
 #   include "createTime.H"
 #   include "createDynamicFvMesh.H"
 
+    const bool checkAMI  = args.optionFound("checkAMI");
+
+    if (checkAMI)
+    {
+        Info<< "Writing VTK files with weights of AMI patches." << nl << endl;
+    }
+
     while (runTime.loop())
     {
         Info<< "Time = " << runTime.timeName() << endl;
@@ -52,6 +131,11 @@ int main(int argc, char *argv[])
         mesh.update();
         mesh.checkMesh(true);
 
+        if (checkAMI)
+        {
+            writeWeights(mesh);
+        }
+
         runTime.write();
 
         Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"

applications/utilities/postProcessing/wall/wallHeatFlux/Make/options

@@ -1,15 +1,18 @@
 EXE_INC = \
     -I$(LIB_SRC)/turbulenceModels \
-    -I$(LIB_SRC)/turbulenceModels/compressible/RAS/RASModel \
+    -I$(LIB_SRC)/turbulenceModels/compressible/turbulenceModel/lnInclude \
     -I$(LIB_SRC)/thermophysicalModels/specie/lnInclude \
     -I$(LIB_SRC)/thermophysicalModels/reactionThermo/lnInclude \
     -I$(LIB_SRC)/thermophysicalModels/basic/lnInclude \
+    -I$(LIB_SRC)/thermophysicalModels/basicSolidThermo/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude
 
 EXE_LIBS = \
-    -lcompressibleRASModels \
+    -lcompressibleTurbulenceModel \
     -lreactionThermophysicalModels \
     -lfiniteVolume \
     -lgenericPatchFields \
     -lspecie \
-    -lbasicThermophysicalModels
+    -lsolid \
+    -lbasicThermophysicalModels \
+    -lbasicSolidThermo

applications/utilities/postProcessing/wall/wallHeatFlux/createFields.H

@@ -5,6 +5,7 @@ autoPtr<basicThermo> thermo
 
 const volScalarField& h = thermo->he();
 
+// Register copy of thermo density
 volScalarField rho
 (
     IOobject
@@ -16,28 +17,40 @@ volScalarField rho
     thermo->rho()
 );
 
-volVectorField U
+// Construct turbulence model (if fluid)
-(
+autoPtr<volVectorField> UPtr;
-    IOobject
+autoPtr<surfaceScalarField> phiPtr;
+autoPtr<compressible::turbulenceModel> turbulence;
+
+if (!isA<solidThermo>(thermo()))
+{
+    UPtr.reset
     (
-        "U",
+        new volVectorField
-        runTime.timeName(),
+        (
-        mesh,
+            IOobject
-        IOobject::MUST_READ,
+            (
-        IOobject::AUTO_WRITE
+                "U",
-    ),
+                runTime.timeName(),
-    mesh
+                mesh,
-);
+                IOobject::MUST_READ,
+                IOobject::AUTO_WRITE
+            ),
+            mesh
+        )
+    );
+    const volVectorField& U = UPtr();
 
-#include "compressibleCreatePhi.H"
+    #include "compressibleCreatePhi.H"
+    // Copy phi to autoPtr. Rename to make sure copy is now registered as 'phi'.
+    phi.rename("phiFluid");
+    phiPtr.reset(new surfaceScalarField("phi", phi));
 
-autoPtr<compressible::RASModel> RASModel
+    turbulence = compressible::turbulenceModel::New
-(
-    compressible::RASModel::New
     (
         rho,
         U,
-        phi,
+        phiPtr(),
         thermo()
-    )
+    );
-);
+}

applications/utilities/postProcessing/wall/wallHeatFlux/wallHeatFlux.C

@@ -32,7 +32,8 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "fvCFD.H"
-#include "RASModel.H"
+#include "turbulenceModel.H"
+#include "solidThermo.H"
 #include "wallFvPatch.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
@@ -56,7 +57,14 @@ int main(int argc, char *argv[])
 
         surfaceScalarField heatFlux
         (
-            fvc::interpolate(RASModel->alphaEff())*fvc::snGrad(h)
+            fvc::interpolate
+            (
+                (
+                    turbulence.valid()
+                  ? turbulence->alphaEff()()
+                  : thermo->alpha()
+                )
+            )*fvc::snGrad(h)
         );
 
         const surfaceScalarField::GeometricBoundaryField& patchHeatFlux =

applications/utilities/preProcessing/applyBoundaryLayer/applyBoundaryLayer.C

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -93,6 +93,7 @@ int main(int argc, char *argv[])
             U[celli] *= ::pow(y[celli]/yblv, (1.0/7.0));
         }
     }
+    U.correctBoundaryConditions();
 
     Info<< "Writing U\n" << endl;
     U.write();
@@ -109,7 +110,7 @@ int main(int argc, char *argv[])
 
     if (args.optionFound("writenut"))
     {
-        Info<< "Writing nut" << endl;
+        Info<< "Writing " << nut.name() << nl << endl;
         nut.write();
     }
 
@@ -126,7 +127,7 @@ int main(int argc, char *argv[])
     k = sqr(nut/(ck0*min(y, ybl)));
     k.correctBoundaryConditions();
 
-    Info<< "Writing k\n" << endl;
+    Info<< "Writing " << k.name() << nl << endl;
     k.write();
 
 
@@ -137,7 +138,7 @@ int main(int argc, char *argv[])
     epsilon = ce0*k*sqrt(k)/min(y, ybl);
     epsilon.correctBoundaryConditions();
 
-    Info<< "Writing epsilon\n" << endl;
+    Info<< "Writing " << epsilon.name() << nl << endl;
     epsilon.write();
 
 

applications/utilities/preProcessing/applyBoundaryLayer/createFields.H

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -41,9 +41,9 @@ License
 
     singlePhaseTransportModel laminarTransport(U, phi);
 
-    autoPtr<incompressible::RASModel> turbulence
+    autoPtr<incompressible::turbulenceModel> turbulence
     (
-        incompressible::RASModel::New(U, phi, laminarTransport)
+        incompressible::turbulenceModel::New(U, phi, laminarTransport)
     );
 
     Info<< "Calculating wall distance field" << endl;

bin/tools/CleanFunctions

@@ -88,7 +88,7 @@ cleanCase()
             rm -rf \
             allOwner* cell* face* meshModifiers* \
             owner* neighbour* point* edge* \
-            cellLevel* pointLevel* refinementHistory* level0Edge surfaceIndex* sets \
+            cellLevel* pointLevel* refinementHistory* level0Edge* surfaceIndex* sets \
             > /dev/null 2>&1 \
         )
     fi

src/OpenFOAM/meshes/polyMesh/polyPatches/basic/coupled/coupledPolyPatch.C

@@ -172,7 +172,7 @@ Foam::scalarField Foam::coupledPolyPatch::calcFaceTol
             maxLenSqr = max(maxLenSqr, magSqr(pt - cc));
             maxCmpt = max(maxCmpt, cmptMax(cmptMag(pt)));
         }
-        tols[faceI] = max(SMALL*maxCmpt, Foam::sqrt(maxLenSqr));
+        tols[faceI] = max(SMALL, max(SMALL*maxCmpt, Foam::sqrt(maxLenSqr)));
     }
     return tols;
 }
@@ -200,12 +200,40 @@ Foam::label Foam::coupledPolyPatch::getRotation
         }
     }
 
-    if (anchorFp == -1 || mag(minDistSqr) > tol)
+    if (anchorFp == -1 || Foam::sqrt(minDistSqr) > tol)
     {
         return -1;
     }
     else
     {
+        // Check that anchor is unique.
+        forAll(f, fp)
+        {
+            scalar distSqr = magSqr(anchor - points[f[fp]]);
+
+            if (distSqr == minDistSqr && fp != anchorFp)
+            {
+                WarningIn
+                (
+                    "label coupledPolyPatch::getRotation\n"
+                    "(\n"
+                    "    const pointField&,\n"
+                    "    const face&,\n"
+                    "    const point&,\n"
+                    "    const scalar\n"
+                    ")"
+                )   << "Cannot determine unique anchor point on face "
+                    << UIndirectList<point>(points, f)
+                    << endl
+                    << "Both at index " << anchorFp << " and " << fp
+                    << " the vertices have the same distance "
+                    << Foam::sqrt(minDistSqr)
+                    << " to the anchor " << anchor
+                    << ". Continuing but results might be wrong."
+                    << endl;
+            }
+        }
+
         // Positive rotation
         return (f.size() - anchorFp) % f.size();
     }

src/OpenFOAM/meshes/primitiveMesh/primitiveMeshFaceCentresAndAreas.C

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -118,8 +118,19 @@ void Foam::primitiveMesh::makeFaceCentresAndAreas
                 sumAc += a*c;
             }
 
-            fCtrs[facei] = (1.0/3.0)*sumAc/(sumA + VSMALL);
+
-            fAreas[facei] = 0.5*sumN;
+            if (sumA < ROOTVSMALL)
+            {
+                // Sum of area too small. No chance of reliably calculating
+                // centroid so fallback to average.
+                fCtrs[facei] = fCentre;
+                fAreas[facei] = 0.5*sumN;
+            }
+            else
+            {
+                fCtrs[facei] = (1.0/3.0)*sumAc/sumA;
+                fAreas[facei] = 0.5*sumN;
+            }
         }
     }
 }

src/mesh/autoMesh/autoHexMesh/autoHexMeshDriver/layerParameters/layerParameters.C

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -28,209 +28,14 @@ License
 #include "unitConversion.H"
 #include "refinementSurfaces.H"
 #include "searchableSurfaces.H"
-#include "regExp.H"
 
 // * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
 const Foam::scalar Foam::layerParameters::defaultConcaveAngle = 90;
 
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
-
-// Read the number of layers from dictionary. Per patch 0 or the number
-// of layers.
-Foam::labelList Foam::layerParameters::readNumLayers
-(
-    const PtrList<dictionary>& surfaceDicts,
-    const refinementSurfaces& refineSurfaces,
-    const labelList& globalToPatch,
-    const polyBoundaryMesh& boundaryMesh
-)
-{
-    // Per surface the number of layers
-    labelList globalSurfLayers(surfaceDicts.size());
-    // Per surface, per region the number of layers
-    List<Map<label> > regionSurfLayers(surfaceDicts.size());
-
-    const labelList& surfaceIndices = refineSurfaces.surfaces();
-
-    forAll(surfaceDicts, surfI)
-    {
-        const dictionary& dict = surfaceDicts[surfI];
-
-        globalSurfLayers[surfI] = readLabel(dict.lookup("surfaceLayers"));
-
-        if (dict.found("regions"))
-        {
-            // Per-region layer information
-
-            PtrList<dictionary> regionDicts(dict.lookup("regions"));
-
-            const wordList& regionNames =
-                refineSurfaces.geometry()[surfaceIndices[surfI]].regions();
-
-            forAll(regionDicts, dictI)
-            {
-                const dictionary& regionDict = regionDicts[dictI];
-
-                const word regionName(regionDict.lookup("name"));
-
-                label regionI = findIndex(regionNames, regionName);
-
-                label nLayers = readLabel(regionDict.lookup("surfaceLayers"));
-
-                Info<< "    region " << regionName << ':'<< nl
-                    << "        surface layers:" << nLayers << nl;
-
-                regionSurfLayers[surfI].insert(regionI, nLayers);
-            }
-        }
-    }
-
-
-    // Transfer per surface/region information into patchwise region info
-
-    labelList nLayers(boundaryMesh.size(), 0);
-
-    forAll(surfaceIndices, surfI)
-    {
-        const wordList& regionNames =
-            refineSurfaces.geometry()[surfaceIndices[surfI]].regions();
-
-        forAll(regionNames, regionI)
-        {
-            const word& regionName = regionNames[regionI];
-
-            label global = refineSurfaces.globalRegion(surfI, regionI);
-
-            label patchI = globalToPatch[global];
-
-            // Initialise to surface-wise layers
-            nLayers[patchI] = globalSurfLayers[surfI];
-
-            // Override with region specific data if available
-            Map<label>::const_iterator iter =
-                regionSurfLayers[surfI].find(regionI);
-
-            if (iter != regionSurfLayers[surfI].end())
-            {
-                nLayers[patchI] = iter();
-            }
-
-            // Check
-            if (nLayers[patchI] < 0)
-            {
-                FatalErrorIn
-                (
-                    "layerParameters::readNumLayers(..)"
-                )   << "Illegal number of layers " << nLayers[patchI]
-                    << " for surface "
-                    << refineSurfaces.names()[surfI]
-                    << " region " << regionName << endl
-                    << exit(FatalError);
-            }
-        }
-    }
-    return nLayers;
-}
-
-
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-//// Construct from dictionary
-//Foam::layerParameters::layerParameters
-//(
-//    const PtrList<dictionary>& surfaceDicts,
-//    const refinementSurfaces& refineSurfaces,
-//    const labelList& globalToPatch,
-//    const dictionary& dict,
-//    const polyBoundaryMesh& boundaryMesh
-//)
-//:
-//    numLayers_
-//    (
-//        readNumLayers
-//        (
-//            surfaceDicts,
-//            refineSurfaces,
-//            globalToPatch,
-//            boundaryMesh
-//        )
-//    ),
-//    expansionRatio_
-//    (
-//        numLayers_.size(),
-//        readScalar(dict.lookup("expansionRatio"))
-//    ),
-//    relativeSizes_(false),
-//    finalLayerThickness_
-//    (
-//        numLayers_.size(),
-//        readScalar(dict.lookup("finalLayerRatio"))
-//    ),
-//    minThickness_
-//    (
-//        numLayers_.size(),
-//        readScalar(dict.lookup("minThickness"))
-//    ),
-//    featureAngle_(readScalar(dict.lookup("featureAngle"))),
-//    concaveAngle_
-//    (
-//        dict.lookupOrDefault("concaveAngle", defaultConcaveAngle)
-//    ),
-//    nGrow_(readLabel(dict.lookup("nGrow"))),
-//    nSmoothSurfaceNormals_
-//    (
-//        readLabel(dict.lookup("nSmoothSurfaceNormals"))
-//    ),
-//    nSmoothNormals_(readLabel(dict.lookup("nSmoothNormals"))),
-//    nSmoothThickness_(readLabel(dict.lookup("nSmoothThickness"))),
-//    maxFaceThicknessRatio_
-//    (
-//        readScalar(dict.lookup("maxFaceThicknessRatio"))
-//    ),
-//    layerTerminationCos_
-//    (
-//        Foam::cos(degToRad(0.5*featureAngle_))
-//    ),
-//    maxThicknessToMedialRatio_
-//    (
-//        readScalar(dict.lookup("maxThicknessToMedialRatio"))
-//    ),
-//    minMedianAxisAngleCos_
-//    (
-//        Foam::cos(degToRad(readScalar(dict.lookup("minMedianAxisAngle"))))
-//    ),
-//    nBufferCellsNoExtrude_
-//    (
-//        readLabel(dict.lookup("nBufferCellsNoExtrude"))
-//    ),
-//    nSnap_(readLabel(dict.lookup("nSnap"))),
-//    nLayerIter_(readLabel(dict.lookup("nLayerIter"))),
-//    nRelaxedIter_(labelMax)
-//{
-//    if (nGrow_ > 0)
-//    {
-//        WarningIn("layerParameters::layerParameters(..)")
-//            << "The nGrow parameter effect has changed with respect to 1.6.x."
-//            << endl
-//            << "Please set nGrow=0 for 1.6.x behaviour."
-//            << endl;
-//    }
-//
-//    dict.readIfPresent("nRelaxedIter", nRelaxedIter_);
-//
-//    if (nLayerIter_ < 0 || nRelaxedIter_ < 0)
-//    {
-//        FatalErrorIn("layerParameters::layerParameters(..)")
-//            << "Layer iterations should be >= 0." << endl
-//            << "nLayerIter:" << nLayerIter_
-//            << " nRelaxedIter:" << nRelaxedIter_
-//            << exit(FatalError);
-//    }
-//}
-
-
 // Construct from dictionary
 Foam::layerParameters::layerParameters
 (
@@ -315,71 +120,51 @@ Foam::layerParameters::layerParameters
 
     const dictionary& layersDict = dict.subDict("layers");
 
-    forAll(boundaryMesh, patchI)
+    forAllConstIter(dictionary, layersDict, iter)
     {
-        const word& patchName = boundaryMesh[patchI].name();
+        if (iter().isDict())
-
-        if (layersDict.found(patchName))
         {
-            const dictionary& layerDict = layersDict.subDict(patchName);
+            const word& key = iter().keyword();
-
+            const labelHashSet patchIDs
-            numLayers_[patchI] =
-                readLabel(layerDict.lookup("nSurfaceLayers"));
-
-            layerDict.readIfPresent
             (
-                "expansionRatio",
+                boundaryMesh.patchSet(List<wordRe>(1, key))
-                expansionRatio_[patchI]
             );
-            layerDict.readIfPresent
-            (
-                "finalLayerThickness",
-                finalLayerThickness_[patchI]
-            );
-            layerDict.readIfPresent
-            (
-                "minThickness",
-                minThickness_[patchI]
-            );
-        }
-    }
 
-
+            if (patchIDs.size() == 0)
-    // Check whether layer specification matches any patches
-    const List<keyType> wildCards = layersDict.keys(true);
-
-    forAll(wildCards, i)
-    {
-        regExp re(wildCards[i]);
-
-        bool hasMatch = false;
-        forAll(boundaryMesh, patchI)
-        {
-            if (re.match(boundaryMesh[patchI].name()))
             {
-                hasMatch = true;
+                IOWarningIn("layerParameters::layerParameters(..)", layersDict)
-                break;
+                    << "Layer specification for " << key
+                    << " does not match any patch." << endl
+                    << "Valid patches are " << boundaryMesh.names() << endl;
             }
-        }
+            else
-        if (!hasMatch)
+            {
-        {
+                const dictionary& layerDict = iter().dict();
-            IOWarningIn("layerParameters::layerParameters(..)", layersDict)
-                << "Wildcard layer specification for " << wildCards[i]
-                << " does not match any patch." << endl
-                << "Valid patches are " << boundaryMesh.names() << endl;
-        }
-    }
 
-    const List<keyType> nonWildCards = layersDict.keys(false);
+                forAllConstIter(labelHashSet, patchIDs, patchIter)
+                {
+                    label patchI = patchIter.key();
 
-    forAll(nonWildCards, i)
+                    numLayers_[patchI] =
-    {
+                        readLabel(layerDict.lookup("nSurfaceLayers"));
-        if (boundaryMesh.findPatchID(nonWildCards[i]) == -1)
+
-        {
+                    layerDict.readIfPresent
-            IOWarningIn("layerParameters::layerParameters(..)", layersDict)
+                    (
-                << "Layer specification for " << nonWildCards[i]
+                        "expansionRatio",
-                << " does not match any patch." << endl
+                        expansionRatio_[patchI]
-                << "Valid patches are " << boundaryMesh.names() << endl;
+                    );
+                    layerDict.readIfPresent
+                    (
+                        "finalLayerThickness",
+                        finalLayerThickness_[patchI]
+                    );
+                    layerDict.readIfPresent
+                    (
+                        "minThickness",
+                        minThickness_[patchI]
+                    );
+                }
+            }
         }
     }
 }

src/mesh/autoMesh/autoHexMesh/autoHexMeshDriver/layerParameters/layerParameters.H

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -109,15 +109,6 @@ class layerParameters
 
     // Private Member Functions
 
-        //- Extract patch-wise number of layers
-        static labelList readNumLayers
-        (
-            const PtrList<dictionary>& surfaceDicts,
-            const refinementSurfaces& refineSurfaces,
-            const labelList& globalToPatch,
-            const polyBoundaryMesh& boundaryMesh
-        );
-
         //- Disallow default bitwise copy construct
         layerParameters(const layerParameters&);
 
@@ -129,17 +120,7 @@ public:
 
     // Constructors
 
-        ////- Construct from dictionary - old syntax
+        //- Construct from dictionary
-        //layerParameters
-        //(
-        //    const PtrList<dictionary>& surfaceDicts,
-        //    const refinementSurfaces& refineSurfaces,
-        //    const labelList& globalToPatch,
-        //    const dictionary& dict,
-        //    const polyBoundaryMesh& boundaryMesh
-        //);
-
-        //- Construct from dictionary - new syntax
         layerParameters(const dictionary& dict, const polyBoundaryMesh&);
 
 

src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C

@@ -129,17 +129,9 @@ extern "C"
 
 // Hack: scotch generates floating point errors so need to switch of error
 //       trapping!
-#if defined(linux) || defined(linuxAMD64) || defined(linuxIA64)
+#ifdef __GLIBC__
-#    define LINUX
+#   ifndef _GNU_SOURCE
-#endif
+#       define _GNU_SOURCE
-
-#if defined(LINUX) && defined(__GNUC__)
-#    define LINUX_GNUC
-#endif
-
-#ifdef LINUX_GNUC
-#   ifndef __USE_GNU
-#       define __USE_GNU
 #   endif
 #   include <fenv.h>
 #endif
@@ -651,7 +643,7 @@ Foam::label Foam::ptscotchDecomp::decompose
 
 
     // Hack:switch off fpu error trapping
-#   ifdef LINUX_GNUC
+#   ifdef  FE_NOMASK_ENV
     int oldExcepts = fedisableexcept
     (
         FE_DIVBYZERO
@@ -681,7 +673,7 @@ Foam::label Foam::ptscotchDecomp::decompose
         "SCOTCH_graphMap"
     );
 
-#   ifdef LINUX_GNUC
+#   ifdef  FE_NOMASK_ENV
     feenableexcept(oldExcepts);
 #   endif
 

src/parallel/decompose/scotchDecomp/scotchDecomp.C

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -135,17 +135,9 @@ extern "C"
 
 // Hack: scotch generates floating point errors so need to switch of error
 //       trapping!
-#if defined(linux) || defined(linuxAMD64) || defined(linuxIA64)
+#ifdef __GLIBC__
-#    define LINUX
+#   ifndef _GNU_SOURCE
-#endif
+#       define _GNU_SOURCE
-
-#if defined(LINUX) && defined(__GNUC__)
-#    define LINUX_GNUC
-#endif
-
-#ifdef LINUX_GNUC
-#   ifndef __USE_GNU
-#       define __USE_GNU
 #   endif
 #   include <fenv.h>
 #endif
@@ -503,7 +495,7 @@ Foam::label Foam::scotchDecomp::decomposeOneProc
 
 
     // Hack:switch off fpu error trapping
-#   ifdef LINUX_GNUC
+#   ifdef FE_NOMASK_ENV
     int oldExcepts = fedisableexcept
     (
         FE_DIVBYZERO
@@ -526,7 +518,7 @@ Foam::label Foam::scotchDecomp::decomposeOneProc
         "SCOTCH_graphMap"
     );
 
-#   ifdef LINUX_GNUC
+#   ifdef FE_NOMASK_ENV
     feenableexcept(oldExcepts);
 #   endif
 

src/thermophysicalModels/basicSolidThermo/solidThermo/makeSolidThermo.H

@@ -33,6 +33,7 @@ Description
 #define makesolidThermo_H
 
 #include "addToRunTimeSelectionTable.H"
+#include "basicThermo.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 namespace Foam
@@ -127,6 +128,12 @@ addToRunTimeSelectionTable                                                    \
     BaseThermo,                                                               \
     Cthermo##Mixture##Transport##Radiation##Type##Thermo##Rho##BaseThermo,    \
     mesh                                                                      \
+);                                                                            \
+addToRunTimeSelectionTable                                                    \
+(                                                                             \
+    basicThermo,                                                              \
+    Cthermo##Mixture##Transport##Radiation##Type##Thermo##Rho##BaseThermo,    \
+    fvMesh                                                                    \
 );                                                                            \
                                                                               \
 addToRunTimeSelectionTable                                                    \