Merge branch 'master' of ssh://noisy/home/noisy3/OpenFOAM/OpenFOAM-dev

.gitignore

@@ -47,6 +47,9 @@ doc/[Dd]oxygen/html
 doc/[Dd]oxygen/latex
 doc/[Dd]oxygen/man
 
+# Other HTML files e.g. ReleaseNotes-?.?.html
+*.html
+
 # source packages - anywhere
 *.tar.bz2
 *.tar.gz

applications/solvers/combustion/PDRFoam/PDRFoam.C

@@ -26,8 +26,8 @@ Application
     PDRFoam
 
 Description
-    Compressible premixed/partially-premixed combustion solver with turbulence
+    Solver for compressible premixed/partially-premixed combustion with
-    modelling.
+    turbulence modelling.
 
     Combusting RANS code using the b-Xi two-equation model.
     Xi may be obtained by either the solution of the Xi transport

applications/solvers/combustion/PDRFoam/PDRModels/turbulence/PDRkEpsilon/PDRkEpsilon.C

@@ -110,6 +110,25 @@ PDRkEpsilon::PDRkEpsilon
         )
     ),
 
+    kappa_
+    (
+        dimensioned<scalar>::lookupOrAddToDict
+        (
+            "kappa_",
+            coeffDict_,
+            0.41
+        )
+    ),
+    E_
+    (
+        dimensioned<scalar>::lookupOrAddToDict
+        (
+            "E",
+            coeffDict_,
+            9.8
+        )
+    ),
+
     k_
     (
         IOobject

applications/solvers/combustion/PDRFoam/PDRModels/turbulence/PDRkEpsilon/PDRkEpsilon.H

@@ -75,6 +75,9 @@ class PDRkEpsilon
         dimensionedScalar alphaEps_;
         dimensionedScalar alphah_;
 
+        dimensionedScalar kappa_;
+        dimensionedScalar E_;
+
         volScalarField k_;
         volScalarField epsilon_;
         volScalarField mut_;
@@ -85,6 +88,7 @@ public:
     //- Runtime type information
     TypeName("PDRkEpsilon");
 
+
     // Constructors
 
         //- Construct from components

applications/solvers/combustion/XiFoam/XiFoam.C

@@ -26,8 +26,8 @@ Application
     XiFoam
 
 Description
-    Compressible premixed/partially-premixed combustion solver with turbulence
+    Solver for compressible premixed/partially-premixed combustion with
-    modelling.
+    turbulence modelling.
 
     Combusting RANS code using the b-Xi two-equation model.
     Xi may be obtained by either the solution of the Xi transport

applications/solvers/combustion/dieselEngineFoam/dieselEngineFoam.C

@@ -26,7 +26,7 @@ Application
     dieselFoam
 
 Description
-    Diesel engine spray and combustion code.
+    Solver for diesel engine spray and combustion.
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/combustion/dieselFoam/dieselFoam.C

@@ -26,7 +26,7 @@ Application
     dieselFoam
 
 Description
-    Diesel spray and combustion code.
+    Solver for diesel spray and combustion.
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/combustion/reactingFoam/reactingFoam.C

@@ -26,7 +26,7 @@ Application
     reactingFoam
 
 Description
-    Chemical reaction code.
+    Solver for combustion with chemical reactions.
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/combustion/rhoReactingFoam/rhoReactingFoam.C

@@ -26,7 +26,8 @@ Application
     rhoReactingFoam
 
 Description
-    Chemical reaction code using density based thermodynamics package.
+    Solver for combustion with chemical reactions using density based
+    thermodynamics package.
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/discreteMethods/dsmc/dsmcFoam/dsmcFoam.C

@@ -26,7 +26,8 @@ Application
     dsmcFoam
 
 Description
-    Direct Simulation Monte Carlo Solver for 3D, transient, multi-species flows
+    Direct simulation Monte Carlo (DSMC) solver for 3D, transient, multi-
+    species flows
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/discreteMethods/molecularDynamics/mdEquilibrationFoam/mdEquilibrationFoam.C

@@ -26,7 +26,7 @@ Application
     mdEquilibrationFoam
 
 Description
-    Equilibrates and/or preconditions MD systems
+    Equilibrates and/or preconditions molecular dynamics systems
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/discreteMethods/molecularDynamics/mdFoam/mdFoam.C

@@ -26,7 +26,7 @@ Application
     mdFoam
 
 Description
-    molecular dynamics solver for fluid dynamics
+    Molecular dynamics solver for fluid dynamics
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/heatTransfer/buoyantPisoFoam/buoyantPisoFoam.C

@@ -26,9 +26,11 @@ Application
     buoyantPisoFoam
 
 Description
-    Transient Solver for buoyant, turbulent flow of compressible fluids for
+    Transient solver for buoyant, turbulent flow of compressible fluids for
-    ventilation and heat-transfer. Turbulence is modelled using a run-time
+    ventilation and heat-transfer.
-    selectable compressible RAS or LES model.
+
+    Turbulence is modelled using a run-time selectable compressible RAS or
+    LES model.
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/incompressible/shallowWaterFoam/shallowWaterFoam.C

@@ -27,6 +27,7 @@ Application
 
 Description
     Transient solver for inviscid shallow-water equations with rotation.
+
     If the geometry is 3D then it is assumed to be one layers of cells and the
     component of the velocity normal to gravity is removed.
 

applications/solvers/lagrangian/porousExplicitSourceReactingParcelFoam/porousExplicitSourceReactingParcelFoam.C

@@ -26,13 +26,17 @@ Application
     porousExplicitSourceReactingParcelFoam
 
 Description
+    Transient PISO solver for compressible, laminar or turbulent flow with
+    reacting Lagrangian parcels for porous media, including explicit sources
+
+    The solver includes:
     - reacting parcel cloud
     - porous media
     - point mass sources
     - polynomial based, incompressible thermodynamics (f(T))
 
     Note: ddtPhiCorr not used here when porous zones are active
-    - not well defined for porous calcs
+    - not well defined for porous calculations
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/lagrangian/uncoupledKinematicParcelFoam/uncoupledKinematicParcelFoam.C

@@ -23,11 +23,13 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Application
-    kinematicParcelFoam
+    uncoupledKinematicParcelFoam
 
 Description
-    Transient solver for a single kinematicCloud. Uses pre-calculated velocity
+    Transient solver for the passive transport of a single kinematic
-    field to evolve a cloud.
+    particle could.
+
+    Uses a pre- calculated velocity field to evolve the cloud.
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/multiphase/compressibleInterDyMFoam/compressibleInterDyMFoam.C

@@ -27,11 +27,13 @@ Application
 
 Description
     Solver for 2 compressible, isothermal immiscible fluids using a VOF
-    (volume of fluid) phase-fraction based interface capturing approach.
+    (volume of fluid) phase-fraction based interface capturing approach,
-    The momentum and other fluid properties are of the "mixture" and a single
+    with optional mesh motion and mesh topology changes including adaptive
-    momentum equation is solved.
+    re-meshing.
 
-    Turbulence modelling is generic, i.e. laminar, RAS or LES may be selected.
+    The momentum and other fluid properties are of the "mixture" and a
+    single momentum equation is solved.  Turbulence modelling is generic,
+    i.e. laminar, RAS or LES may be selected.
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/multiphase/compressibleInterFoam/compressibleInterFoam.C

@@ -28,10 +28,11 @@ Application
 Description
     Solver for 2 compressible, isothermal immiscible fluids using a VOF
     (volume of fluid) phase-fraction based interface capturing approach.
+
     The momentum and other fluid properties are of the "mixture" and a single
     momentum equation is solved.
 
-    Turbulence modelling is generic, i.e. laminar, RAS or LES may be selected.
+    Turbulence modelling is generic, i.e.  laminar, RAS or LES may be selected.
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/multiphase/interFoam/interFoam.C

@@ -28,10 +28,11 @@ Application
 Description
     Solver for 2 incompressible, isothermal immiscible fluids using a VOF
     (volume of fluid) phase-fraction based interface capturing approach.
+
     The momentum and other fluid properties are of the "mixture" and a single
     momentum equation is solved.
 
-    Turbulence modelling is generic, i.e. laminar, RAS or LES may be selected.
+    Turbulence modelling is generic, i.e.  laminar, RAS or LES may be selected.
 
     For a two-fluid approach see twoPhaseEulerFoam.
 

applications/solvers/multiphase/interPhaseChangeFoam/interPhaseChangeFoam.C

@@ -28,8 +28,10 @@ Application
 Description
     Solver for 2 incompressible, isothermal immiscible fluids with phase-change
     (e.g. cavitation).  Uses a VOF (volume of fluid) phase-fraction based
-    interface capturing approach.  The momentum and other fluid properties are
+    interface capturing approach.
-    of the "mixture" and a single momentum equation is solved.
+
+    The momentum and other fluid properties are of the "mixture" and a
+    single momentum equation is solved.
 
     The set of phase-change models provided are designed to simulate cavitation
     but other mechanisms of phase-change are supported within this solver

applications/solvers/multiphase/multiphaseInterFoam/multiphaseInterFoam.C

@@ -27,7 +27,7 @@ Application
 
 Description
     Solver for n incompressible fluids which captures the interfaces and
-    includes surface-tension and contact-angle effects for each.
+    includes surface-tension and contact-angle effects for each phase.
 
     Turbulence modelling is generic, i.e. laminar, RAS or LES may be selected.
 

applications/utilities/mesh/advanced/refineHexMesh/refineHexMesh.C

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Hex 2x2x2 refiner
+    Refines a hex mesh by 2x2x2 cell splitting.
 
 \*---------------------------------------------------------------------------*/
 

applications/utilities/mesh/advanced/refineWallLayer/refineWallLayer.C

@@ -23,9 +23,10 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Utility to refine cells next to patches. Takes a patchName
+    Utility to refine cells next to patches.
-    and number of layers to refine. Works out cells within these layers
+
-    and refines those in the wall-normal direction.
+    Takes a patchName and number of layers to refine. Works out cells within
+    these layers and refines those in the wall-normal direction.
 
 \*---------------------------------------------------------------------------*/
 

applications/utilities/mesh/advanced/splitCells/splitCells.C

@@ -23,10 +23,11 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Utility to split cells with flat faces. Uses a geometric cut with a plane
+    Utility to split cells with flat faces.
-    dividing the edge angle into two so might produce funny cells. For hexes
+
-    it will use by default a cut from edge onto opposite edge (i.e. purely
+    Uses a geometric cut with a plane dividing the edge angle into two so
-    topological).
+    might produce funny cells. For hexes it will use by default a cut from
+    edge onto opposite edge (i.e. purely topological).
 
     Options:
     - split cells from cellSet only

applications/utilities/mesh/conversion/mshToFoam/mshToFoam.C

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Reads .msh format generated by the Adventure system.
+    Converts .msh file generated by the Adventure system.
 
     Note: the .msh format does not contain any boundary information. It is
     purely a description of the internal mesh.

applications/utilities/mesh/conversion/netgenNeutralToFoam/netgenNeutralToFoam.C

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    read Neutral file format as written by Netgen4.4.
+    Converts neutral file format as written by Netgen v4.4.
 
     Example:
 

applications/utilities/mesh/conversion/polyDualMesh/polyDualMeshApp.C

@@ -23,8 +23,8 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Calculate the dual of a polyMesh. Adheres to all the feature&patch edges.
+    Calculate the dual of a polyMesh. Adheres to all the feature and patch
-
+    edges.
 
 Usage
 

applications/utilities/mesh/conversion/star4ToFoam/star4ToFoam.C

@@ -79,7 +79,7 @@ int main(int argc, char *argv[])
             scaleFactor = 1;
         }
     }
-    
+
     if (args.optionFound("solids"))
     {
         meshReaders::STARCD::keepSolids = true;

applications/utilities/mesh/conversion/tetgenToFoam/tetgenToFoam.C

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Reads .ele and .node and .face files as written by tetgen.
+    Converts .ele and .node and .face files, written by tetgen.
 
     Make sure to use add boundary attributes to the smesh file
     (5 fifth column in the element section)

applications/utilities/mesh/generation/blockMesh/setEdge.C

@@ -100,7 +100,7 @@ void blockDescriptor::setEdge(label edgeI, label start, label end, label dim)
                 scalar gExp = calcGexp(expand_[edgeI], dim);
 
                 // divide the line
-                lineDivide divEdge(curvedEdges_[nCEI], dim, 1.0/gExp);
+                lineDivide divEdge(curvedEdges_[nCEI], dim, 1.0/(gExp+SMALL));
 
                 pointField p = divEdge.points();
                 scalarList d = divEdge.lambdaDivisions();

applications/utilities/mesh/generation/extrudeMesh/extrudeMesh.C

@@ -24,8 +24,8 @@ License
 
 Description
     Extrude mesh from existing patch (by default outwards facing normals;
-    optional flips faces)
+    optional flips faces) or from patch read from file.
-    or from patch read from file.
+
     Note: Merges close points so be careful.
 
     Type of extrusion prescribed by run-time selectable model.

applications/utilities/mesh/manipulation/createBaffles/createBaffles.C

@@ -23,8 +23,8 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Makes internal faces into boundary faces. Does not duplicate points. Use
+    Makes internal faces into boundary faces. Does not duplicate points, unlike
-    mergeOrSplitBaffles if you want this.
+    mergeOrSplitBaffles.
 
     Note: if any coupled patch face is selected for baffling automatically
     the opposite member is selected for baffling as well. Note that this

applications/utilities/mesh/manipulation/flattenMesh/flattenMesh.C

@@ -26,7 +26,7 @@ Application
     flattenMesh
 
 Description
-    Flatten the front and back planes of a 2D cartesian mesh.
+    Flattens the front and back planes of a 2D cartesian mesh.
 
 \*---------------------------------------------------------------------------*/
 
@@ -90,7 +90,7 @@ int main(int argc, char *argv[])
         }
     }
 
-    twoDCorr.correctPoints(points); 
+    twoDCorr.correctPoints(points);
 
     // Set the precision of the points data to 10
     IOstream::defaultPrecision(10);

applications/utilities/mesh/manipulation/insideCells/insideCells.C

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Pick up cells with cell centre 'inside' of surface. Requires surface
+    Picks up cells with cell centre 'inside' of surface. Requires surface
     to be closed and singly connected.
 
 \*---------------------------------------------------------------------------*/

applications/utilities/mesh/manipulation/mergeOrSplitBaffles/mergeOrSplitBaffles.C

@@ -26,7 +26,7 @@ Application
     mergeOrSplitBaffles
 
 Description
-    Detect faces that share points (baffles). Either merge them or
+    Detects faces that share points (baffles). Either merge them or
     duplicate the points.
 
     Notes:

applications/utilities/mesh/manipulation/mirrorMesh/mirrorMesh.C

@@ -23,7 +23,6 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-
     Mirrors a mesh around a given plane.
 
 \*---------------------------------------------------------------------------*/

applications/utilities/mesh/manipulation/refineMesh/refineMesh.C

@@ -23,9 +23,10 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Utility to refine cells in multiple directions. Either supply -all
+    Utility to refine cells in multiple directions.
-    option to refine all cells (3D refinement for 3D cases; 2D for 2D cases)
+
-    or reads a refineMeshDict with
+    Either supply -all option to refine all cells (3D refinement for 3D
+    cases; 2D for 2D cases) or reads a refineMeshDict with
     - cellSet to refine
     - directions to refine
 

applications/utilities/mesh/manipulation/splitMeshRegions/splitMeshRegions.C

@@ -23,8 +23,10 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Splits mesh into multiple regions. Each region is defined as a domain
+    Splits mesh into multiple regions.
-    whose cells can all be reached by cell-face-cell walking without crossing
+
+    Each region is defined as a domain whose cells can all be reached by
+    cell-face-cell walking without crossing
     - boundary faces
     - additional faces from faceset (-blockedFaces faceSet).
     - any face inbetween differing cellZones (-cellZones)

applications/utilities/mesh/manipulation/transformPoints/transformPoints.C

@@ -27,7 +27,10 @@ Application
 
 Description
     Transforms the mesh points in the polyMesh directory according to the
-    options:
+    translate, rotate and scale options.
+
+Usage
+    Options are:
 
     -translate vector
         Translates the points by the given vector,

applications/utilities/parallelProcessing/reconstructParMesh/reconstructParMesh.C

@@ -26,9 +26,10 @@ Application
     reconstructParMesh
 
 Description
-    Reconstructs a mesh using geometric information only. Writes
+    Reconstructs a mesh using geometric information only.
-    point/face/cell procAddressing so afterwards reconstructPar can be used to
+
-    reconstruct fields.
+    Writes point/face/cell procAddressing so afterwards reconstructPar can be
+    used to reconstruct fields.
 
     Note:
     - uses geometric matching tolerance (set with -mergeTol option)

applications/utilities/parallelProcessing/redistributeMeshPar/redistributeMeshPar.C

@@ -26,8 +26,11 @@ Application
     redistributeMeshPar
 
 Description
-    Parallel redecomposition of mesh. Start with maximum number of processors.
+    Redistributes existing decomposed mesh and fields according to the current
-    Balances mesh and writes new mesh to new timedirectory.
+    settings in the decomposeParDict file.
+
+    Must be run on maximum number of source and destination processors.
+    Balances mesh and writes new mesh to new time directory.
 
     Can also work like decomposePar:
 

applications/utilities/postProcessing/dataConversion/foamToGMV/foamToGMV.C

@@ -24,6 +24,7 @@ License
 
 Description
     Translates foam output to GMV readable files.
+
     A free post-processor with available binaries from
     http://www-xdiv.lanl.gov/XCM/gmv/
 

applications/utilities/postProcessing/graphics/fieldview9Reader/fieldview9Reader.C

@@ -23,7 +23,8 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Reader module for Fieldview9 to read Foam mesh&data.
+    Reader module for Fieldview9 to read OpenFOAM mesh and data.
+
     Creates new 'fvbin' type executable which needs to be installed in place
     of bin/fvbin.
 

applications/utilities/postProcessing/miscellaneous/pdfPlot/pdfPlot.C

@@ -23,6 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
+    Generates an .obj file to plot a probability distribution function
 
 \*---------------------------------------------------------------------------*/
 
@@ -48,7 +49,7 @@ int main(int argc, char *argv[])
     (
         pdf::New(pdfDictionary, rndGen)
     );
-    
+
     scalar xMin = p->minValue();
 
     scalar xMax = p->maxValue();

applications/utilities/postProcessing/turbulence/createTurbulenceFields/createTurbulenceFields.C

@@ -26,7 +26,8 @@ Application
     CreateTurbulenceFields
 
 Description
-    Creates a full setturbulence fields.
+    Creates a full set of turbulence fields.
+
     - Currently does not output nut and nuTilda
 
 Source files:

applications/utilities/postProcessing/velocityField/Co/Co.C

@@ -28,6 +28,7 @@ Application
 Description
     Calculates and writes the Co number as a surfaceScalarField obtained
     from field phi.
+
     The -noWrite option just outputs the max values without writing the
     field.
 

applications/utilities/postProcessing/velocityField/Lambda2/Lambda2.C

@@ -29,6 +29,7 @@ Description
     Calculates and writes the second largest eigenvalue of the sum of the
     square of the symmetrical and anti-symmetrical parts of the velocity
     gradient tensor.
+
     The -noWrite option has no meaning.
 
 \*---------------------------------------------------------------------------*/

applications/utilities/postProcessing/velocityField/Mach/Mach.C

@@ -27,8 +27,9 @@ Application
 
 Description
     Calculates and optionally writes the local Mach number from the velocity
-    field U at each time. The -nowrite option just outputs the max value
+    field U at each time.
-    without writing the field.
+
+    The -nowrite option just outputs the max value without writing the field.
 
 \*---------------------------------------------------------------------------*/
 

applications/utilities/postProcessing/velocityField/Pe/Pe.C

@@ -28,6 +28,7 @@ Application
 Description
     Calculates and writes the Pe number as a surfaceScalarField obtained from
     field phi.
+
     The -noWrite option just outputs the max/min values without writing
     the field.
 

applications/utilities/postProcessing/velocityField/Q/Q.C

@@ -27,6 +27,7 @@ Application
 
 Description
     Calculates and writes the second invariant of the velocity gradient tensor.
+
     The -noWrite option just outputs the max/min values without writing
     the field.
 

applications/utilities/postProcessing/velocityField/enstrophy/enstrophy.C

@@ -27,6 +27,7 @@ Application
 
 Description
     Calculates and writes the enstrophy of the velocity field U.
+
     The -noWrite option just outputs the max/min values without writing the
     field.
 

applications/utilities/postProcessing/velocityField/flowType/flowType.C

@@ -27,6 +27,7 @@ Application
 
 Description
     Calculates and writes the flowType of velocity field U.
+
     The -noWrite option has no meaning.
 
     The flow type parameter is obtained according to the following equation:

applications/utilities/postProcessing/velocityField/uprime/uprime.C

@@ -27,6 +27,7 @@ Application
 
 Description
     Calculates and writes the scalar field of uprime (sqrt(2/3 k)).
+
     The -noWrite option just outputs the max/min values without writing
     the field.
 

applications/utilities/postProcessing/velocityField/vorticity/vorticity.C

@@ -27,6 +27,7 @@ Application
 
 Description
     Calculates and writes the vorticity of velocity field U.
+
     The -noWrite option just outputs the max/min values without writing
     the field.
 

applications/utilities/preProcessing/applyWallFunctionBounaryConditions/Make/files

@@ -1,3 +0,0 @@
-applyWallFunctionBounaryConditions.C
-
-EXE = $(FOAM_APPBIN)/applyWallFunctionBounaryConditions

applications/utilities/preProcessing/applyWallFunctionBoundaryConditions/Make/files

@@ -0,0 +1,3 @@
+applyWallFunctionBoundaryConditions.C
+
+EXE = $(FOAM_APPBIN)/applyWallFunctionBoundaryConditions

applications/utilities/preProcessing/applyWallFunctionBoundaryConditions/applyWallFunctionBoundaryConditions.C

@@ -27,6 +27,7 @@ Application
 
 Description
     Updates OpenFOAM RAS cases to use the new wall function framework
+
     Attempts to determine whether case is compressible or incompressible, or
     can be supplied with -compressible command line argument
 

applications/utilities/preProcessing/changeDictionary/changeDictionary.C

@@ -26,8 +26,10 @@ Application
     changeDictionary
 
 Description
-    Simple dictionary changing tool. Can be used to e.g. change the patch
+    Utility to change dictionary entries, e.g. can be used to change the patch
-    type. Reads dictionaries (fields) and entries to change from a dictionary.
+    type in the field and polyMesh/boundary files.
+
+    Reads dictionaries (fields) and entries to change from a dictionary.
     E.g. to make the @em movingWall a @em fixedValue for @em p, the
     @c system/changeDictionaryDict would contain the following:
     @verbatim

applications/utilities/preProcessing/mdInitialise/mdInitialise.C

@@ -22,6 +22,9 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
+Description
+    Initialises fields for a molecular dynamics (MD) simulation.
+
 \*---------------------------------------------------------------------------*/
 
 #include "md.H"

etc/constant/RASProperties

@@ -1,235 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  1.5                                   |
-|   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
-|    \\/     M anipulation  |                                                 |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
-    version     2.0;
-    format      ascii;
-    class       dictionary;
-    note        "default coefficients for RAS models";
-    location    "constant";
-    object      RASProperties;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-
-wallFunctionCoeffs
-{
-    kappa       0.4187;
-    E           9;
-}
-
-
-kEpsilonCoeffs
-{
-    Cmu         0.09;
-    C1          1.44;
-    C2          1.92;
-    C3          -0.33;  // only for compressible
-    alphak      1.0;    // only for compressible
-    alphaEps    0.76923;
-    alphah      1.0;    // only for compressible
-}
-
-
-RNGkEpsilonCoeffs
-{
-    Cmu         0.0845;
-    C1          1.42;
-    C2          1.68;
-    C3          -0.33;  // only for compressible
-    alphak      1.39;
-    alphaEps    1.39;
-    alphah      1.0;    // only for compressible
-    eta0        4.38;
-    beta        0.012;
-}
-
-
-realizableKECoeffs
-{
-    Cmu         0.09;
-    A0          4.0;
-    C2          1.9;
-    alphak      1.0;
-    alphaEps    0.833333;
-    alphah      1.0;    // only for compressible
-}
-
-
-kOmegaSSTCoeffs
-{
-    alphaK1     0.85034;
-    alphaK2     1.0;
-    alphaOmega1 0.5;
-    alphaOmega2 0.85616;
-    alphah      1.0;    // only for compressible
-    beta1       0.075;
-    beta2       0.0828;
-    betaStar    0.09;
-    gamma1      0.5532;
-    gamma2      0.4403;
-    a1          0.31;
-    c1          10.0;
-}
-
-
-LaunderGibsonRSTMCoeffs
-{
-    Cmu         0.09;
-    Clg1        1.8;
-    Clg2        0.6;
-    C1          1.44;
-    C2          1.92;
-    C1Ref       0.5;
-    C2Ref       0.3;
-    Cs          0.25;
-    Ceps        0.15;
-    alphah      1.0;    // only for compressible
-    alphaEps    0.76923;
-    alphaR      1.22;
-    couplingFactor  0.0;
-}
-
-
-LaunderSharmaKECoeffs
-{
-    Cmu         0.09;
-    C1          1.44;
-    C2          1.92;
-    C3          -0.33;
-    alphah      1.0;    // only for compressible
-    alphahk     1.0;    // only for compressible
-    alphaEps    0.76923;
-}
-
-
-LRRCoeffs
-{
-    Cmu         0.09;
-    Clrr1       1.8;
-    Clrr2       0.6;
-    C1          1.44;
-    C2          1.92;
-    Cs          0.25;
-    Ceps        0.15;
-    alphah      1.0;        // only for compressible
-    alphaEps    0.76923;
-    alphaR      1.22;       // only for compressible
-    couplingFactor  0.0;    // only for incompressible
-}
-
-
-SpalartAllmarasCoeffs
-{
-    Cb1         0.1355;
-    Cb2         0.622;
-    Cw2         0.3;
-    Cw3         2.0;
-    Cv1         7.1;
-    Cv2         5.0;
-    alphaNut    1.5;
-    alphah      1.0;    // only for compressible
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-// incompressible only:
-
-kOmegaCoeffs
-{
-    betaStar    0.09;
-    alpha       0.52;
-    beta        0.072;
-    alphak      0.5;
-    alphaOmega  0.5;
-    Cmu         $betaStar;  // equivalent to betaStar
-}
-
-
-LamBremhorstKECoeffs
-{
-    Cmu         0.09;
-    C1          1.44;
-    C2          1.92;
-    alphaEps    0.76923;
-}
-
-
-LienCubicKECoeffs
-{
-    C1              1.44;
-    C2              1.92;
-    alphak          1;
-    alphaEps        0.76923;
-    A1              1.25;
-    A2              1000;
-    Ctau1           -4;
-    Ctau2           13;
-    Ctau3           -2;
-    alphaKsi        0.9;
-}
-
-
-LienCubicKELowReCoeffs
-{
-    Cmu             0.09;
-    C1              1.44;
-    C2              1.92;
-    alphak          1;
-    alphaEps        0.76923;
-    A1              1.25;
-    A2              1000;
-    Ctau1           -4;
-    Ctau2           13;
-    Ctau3           -2;
-    alphaKsi        0.9;
-    Am              0.016;
-    Aepsilon        0.263;
-    Amu             0.00222;
-}
-
-
-LienLeschzinerLowReCoeffs
-{
-    Cmu             0.09;
-    C1              1.44;
-    C2              1.92;
-    alphak          1;
-    alphaEps        0.76923;
-    Am              0.016;
-    Aepsilon        0.263;
-    Amu             0.00222;
-}
-
-
-NonlinearKEShihCoeffs
-{
-    Cmu             0.09;  // only for boundary conditions?
-    C1              1.44;
-    C2              1.92;
-    alphak          1;
-    alphaEps        0.76932;
-    A1              1.25;
-    A2              1000;
-    Ctau1           -4;
-    Ctau2           13;
-    Ctau3           -2;
-    alphaKsi        0.9;
-}
-
-QZetaCoeffs
-{
-    Cmu             0.09;
-    C1              1.44;
-    C2              1.92;
-    alphaZeta       0.76923;
-    anisotropic     false;
-}
-
-
-// ************************************************************************* //

tutorials/combustion/XiFoam/les/pitzDaily3D/constant/polyMesh/boundary

@@ -1,7 +1,7 @@
 /*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  dev                                   |
+|  \\    /   O peration     | Version:  1.6                                   |
 |   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/

tutorials/combustion/XiFoam/les/pitzDaily3D/system/fvSchemes

@@ -34,11 +34,7 @@ divSchemes
     div(phiXi,Xi)   Gauss limitedLinear01 0.1;
     div(phiXi,Su)   Gauss limitedLinear01 0.1;
     div(phiSt,b)    Gauss limitedLinear01 0.1;
-    div(phi,ft) Gauss limitedLinear01 0.1;
+    div(phi,ft_b_h_hu) Gauss multivariateSelection
-    div(phi,b) Gauss limitedLinear01 0.1;
-    div(phi,h) Gauss limitedLinear 0.1;
-    div(phi,hu) Gauss limitedLinear 0.1;
-    div(phi,ft_b_h_hu)_0 Gauss multivariateSelection
     {
         ft limitedLinear01 0.1;
         b limitedLinear01 0.1;

tutorials/combustion/XiFoam/ras/moriyoshiHomogeneous/0/alphat

@@ -0,0 +1,47 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
+|  \\    /   O peration     | Version:  1.6                                   |
+|   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       volScalarField;
+    location    "0";
+    object      alphat;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+dimensions      [1 -1 -1 0 0 0 0];
+
+internalField   uniform 0;
+
+boundaryField
+{
+    left
+    {
+        type            symmetryPlane;
+    }
+    right
+    {
+        type            symmetryPlane;
+    }
+    top
+    {
+        type            symmetryPlane;
+    }
+    bottom
+    {
+        type            symmetryPlane;
+    }
+    frontAndBack
+    {
+        type            empty;
+    }
+}
+
+
+// ************************************************************************* //

tutorials/combustion/XiFoam/ras/moriyoshiHomogeneous/constant/polyMesh/boundary

@@ -1,7 +1,7 @@
 /*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  dev                                   |
+|  \\    /   O peration     | Version:  1.6                                   |
 |   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/

tutorials/combustion/XiFoam/ras/moriyoshiHomogeneous/system/fvSchemes

@@ -39,7 +39,14 @@ divSchemes
     div(phiXi,Xi)   Gauss limitedLinear 1;
     div(phiXi,Su)   Gauss limitedLinear 1;
     div(phiSt,b)    Gauss limitedLinear01 1;
-    div(phi,ft_b_h_hu) Gauss multivariateSelection { fu limitedLinear01 1 ; ft limitedLinear01 1 ; b limitedLinear01 1 ; h limitedLinear 1 ; hu limitedLinear 1 ; };
+    div(phi,ft_b_h_hu) Gauss multivariateSelection
+    {
+        fu limitedLinear01 1;
+        ft limitedLinear01 1;
+        b limitedLinear01 1;
+        h limitedLinear 1;
+        hu limitedLinear 1;
+    };
     div(U)          Gauss linear;
     div((Su*grad(b))) Gauss linear;
     div((U+((Su*Xi)*grad(b)))) Gauss linear;
@@ -54,8 +61,8 @@ laplacianSchemes
     laplacian(DepsilonEff,epsilon) Gauss linear corrected;
     laplacian(DREff,R) Gauss linear corrected;
     laplacian((rho*(1|A(U))),p) Gauss linear corrected;
-    laplacian(muEff,b) Gauss linear corrected;
+    laplacian(alphaEff,b) Gauss linear corrected;
-    laplacian(muEff,ft) Gauss linear corrected;
+    laplacian(alphaEff,ft) Gauss linear corrected;
     laplacian(alphaEff,h) Gauss linear corrected;
     laplacian(alphaEff,hu) Gauss linear corrected;
 }

tutorials/multiphase/interDyMFoam/ras/damBreakWithObstacle/0/U

@@ -1,7 +1,7 @@
 /*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  dev                                   |
+|  \\    /   O peration     | Version:  1.6                                   |
 |   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/

tutorials/multiphase/interDyMFoam/ras/damBreakWithObstacle/0/alpha1

@@ -1,7 +1,7 @@
 /*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  dev                                   |
+|  \\    /   O peration     | Version:  1.6                                   |
 |   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/

tutorials/multiphase/interDyMFoam/ras/damBreakWithObstacle/constant/polyMesh/boundary

@@ -1,7 +1,7 @@
 /*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  dev                                   |
+|  \\    /   O peration     | Version:  1.6                                   |
 |   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/