Merge branch 'master' into particleInteractions

tutorials/Allclean

@@ -1,35 +1,4 @@
 #!/bin/sh
-#------------------------------------------------------------------------------
-# =========                 |
-# \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
-#  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 1991-2009 OpenCFD Ltd.
-#    \\/     M anipulation  |
-#------------------------------------------------------------------------------
-# License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software; you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by the
-#     Free Software Foundation; either version 2 of the License, or (at your
-#     option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM; if not, write to the Free Software Foundation,
-#     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-#
-# Script
-#     Allclean
-#
-# Description
-#
-#------------------------------------------------------------------------------
-
 cd ${0%/*} || exit 1    # run from this directory
 
 echo "--------"
@@ -43,4 +12,5 @@ rm logs testLoopReport > /dev/null 2>&1
 foamCleanTutorials cases
 
 echo "--------"
+
 # ----------------------------------------------------------------- end-of-file

tutorials/Allrun

@@ -3,7 +3,7 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 1991-2009 OpenCFD Ltd.
+#   \\  /    A nd           | Copyright (C) 1991-2010 OpenCFD Ltd.
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
@@ -29,7 +29,6 @@
 # Description
 #
 #------------------------------------------------------------------------------
-
 cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
@@ -37,10 +36,11 @@ cd ${0%/*} || exit 1    # run from this directory
 
 # logReport <logfile>
 # Extracts useful info from log file.
-logReport () {
-    case=`dirname $1 | sed s/"\(.*\)\.\/"/""/g`
+logReport()
+{
+    caseName=`dirname $1 | sed s/"\(.*\)\.\/"/""/g`
     app=`echo $1 | sed s/"\(.*\)\."/""/g`
-    appAndCase="Application $app - case $case"
+    appAndCase="Application $app - case $caseName"
 
     fatalError=`grep "FOAM FATAL" $1`
     UxSS=`grep -E "Ux[:| ]*solution singularity" $1`
@@ -51,11 +51,9 @@ logReport () {
     if [ "$fatalError" ]
     then
         echo "$appAndCase: ** FOAM FATAL ERROR **"
-        return
     elif [ "$UxSS" -a "$UySS" -a "$UzSS" ]
     then
         echo "$appAndCase: ** Solution singularity **"
-        return
     elif [ "$completed" ]
     then
         completionTime=`tail -10 $log | grep Execution | cut -d= -f2 | sed 's/^[ \t]*//'`
@@ -64,7 +62,6 @@ logReport () {
             completionTime="in $completionTime"
         fi
         echo "$appAndCase: completed $completionTime"
-        return
     else
         echo "$appAndCase: unconfirmed completion"
     fi
@@ -78,18 +75,18 @@ foamRunTutorials cases
 # Analyse all log files
 rm testLoopReport > /dev/null 2>&1 &
 touch testLoopReport
-for application in *
+
+for appDir in *
 do
-    if [ -d $application ]
-    then
-        cd $application
-        for log in `find . -name "log.*" | xargs ls -rt`
-        do
-            logReport $log >> ../testLoopReport
-        done
-        echo "" >> ../testLoopReport
-        cd ..
-    fi
+(
+    [ -d $appDir ] && cd $appDir || exit
+
+    for log in `find . -name "log.*" | xargs ls -rt`
+    do
+        logReport $log >> ../testLoopReport
+    done
+    echo "" >> ../testLoopReport
+)
 done
 
 find . -name "log.*" -exec cat {} \; >> logs

tutorials/Alltest

@@ -3,7 +3,7 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 1991-2009 OpenCFD Ltd.
+#   \\  /    A nd           | Copyright (C) 1991-2010 OpenCFD Ltd.
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
@@ -30,10 +30,10 @@
 #     quickly tests the tutorials and writes out the scheme/solver information
 #
 #------------------------------------------------------------------------------
-
 cd ${0%/*} || exit 1    # run from this directory
 
-usage() {
+usage()
+{
     while [ "$#" -ge 1 ]; do echo "$1"; shift; done
     cat<<USAGE
 
@@ -50,7 +50,8 @@ USAGE
 }
 
 
-setDefaultFvSchemes() {
+setDefaultFvSchemes()
+{
 cat<<EOF
 gradSchemes { default Gauss linear; }
 divSchemes
@@ -127,8 +128,12 @@ eval set -- "$OPTS"
 while [ $1 != -- ]
 do
     case $1 in
-        -d) DEFAULT_SCHEMES=1;;
-        -h) usage;;
+    -d)
+        DEFAULT_SCHEMES=1
+        ;;
+    -h)
+        usage
+        ;;
     esac
     shift
 done
@@ -225,5 +230,4 @@ do
     echo "" >> $SOLVERS_FILE
 done
 
-
 # ----------------------------------------------------------------- end-of-file

tutorials/DNS/dnsFoam/boxTurb16/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,3 +7,5 @@
 cleanCase
 rm -rf 0
 cp -r 0.org 0
+
+# ----------------------------------------------------------------- end-of-file

tutorials/DNS/dnsFoam/boxTurb16/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -9,3 +11,5 @@ runApplication blockMesh
 runApplication boxTurb
 runApplication $application
 runApplication enstrophy
+
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/laplacianFoam/flange/Allclean

@@ -1,8 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
-rm -rf Fieldview > /dev/null 2>&1
-rm -rf EnSight > /dev/null 2>&1
+rm -rf EnSight Ensight Fieldview > /dev/null 2>&1
+
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/laplacianFoam/flange/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -20,3 +22,5 @@ runAnsysToFoam flange.ans 0.001
 runApplication $application
 runApplication foamToFieldview9
 runApplication foamToEnsight
+
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/potentialFoam/Allclean

@@ -1,18 +1,25 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
-cd cylinder
+(
+    cd cylinder || exit
+
     cleanCase
     rm -rf 0 > /dev/null 2>&1
     cp -r 0.org 0
     wclean analyticalCylinder
-cd ..
+)
+
+
+(
+    cd pitzDaily || exit
 
-cd pitzDaily
     cleanCase
     rm -rf 0 > /dev/null 2>&1
     cp -r 0.org 0
-cd ..
+)
 
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/potentialFoam/cylinder/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -9,3 +11,5 @@ runApplication $application
 compileApplication analyticalCylinder
 runApplication analyticalCylinder
 runApplication streamFunction
+
+# ----------------------------------------------------------------- end-of-file

tutorials/basic/potentialFoam/pitzDaily/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication $application
 runApplication streamFunction
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/XiFoam/ras/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,12 +7,18 @@
 keepCases="moriyoshiHomogeneous"
 loseCases="moriyoshiHomogeneousPart2"
 
-for case in $keepCases
+for caseName in $keepCases
 do
-    (cd $case && foamCleanTutorials)
+(
+    cd $caseName || exit
+
+    foamCleanTutorials
+)
 done
 
-for case in $loseCases
+for caseName in $loseCases
 do
-    removeCase $case
+    removeCase $caseName
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/XiFoam/ras/Allrun

@@ -1,12 +1,16 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Set application name
 application="XiFoam"
 
-setControlDict () {
+setControlDict()
+{
     controlDict="system/controlDict"
+
     sed \
     -e s/"\(deltaT[ \t]*\) 5e-06;"/"\1 1e-05;"/g \
     -e s/"\(endTime[ \t]*\) 0.005;"/"\1 0.015;"/g \
@@ -15,15 +19,20 @@ setControlDict () {
     mv temp.$$ $controlDict
 }
 
+
 # Do moriyoshiHomogeneous
-(cd moriyoshiHomogeneous && foamRunTutorials)
+( cd moriyoshiHomogeneous && foamRunTutorials )
 
 # Clone case
 cloneCase moriyoshiHomogeneous moriyoshiHomogeneousPart2
 
 # Modify and execute
-cd moriyoshiHomogeneousPart2
+(
+    cd moriyoshiHomogeneousPart2 || exit
+
     cp -r ../moriyoshiHomogeneous/0.005 .
     setControlDict
     runApplication $application
-cd ..
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/engineFoam/kivaTest/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -8,3 +9,5 @@ rm -rf 0
 cp system/controlDict.1st system/controlDict
 cleanCase
 mv temp180 ./-180
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/engineFoam/kivaTest/Allrun

@@ -1,32 +1,42 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Get application name
 application=`getApplication`
 
-runKivaToFoam ()
+runKivaToFoam()
 {
-    if [ -f $1/log.kivaToFoam ] ; then
-        echo "kivaToFoam already run on $1: remove log file to run"
+    if [ -f log.kivaToFoam ]
+    then
+        echo "kivaToFoam already run: remove log file to run"
     else
         echo "kivaToFoam: converting kiva file"
-        kivaToFoam -case $1 -file $2 > $1/log.kivaToFoam 2>&1
+        kivaToFoam -file $1 > log.kivaToFoam 2>&1
     fi
 }
 
-restartApplication ()
+
+restartApplication()
 {
-    if [ -f $2/log-2.$1 ] ; then
-        echo "$1 already run on $2: remove log file to run"
+    if [ -f log-2.$1 ]
+    then
+        echo "$1 already run: remove log file to run"
     else
-        echo "Running $1 on $2"
-        $1 -case $2 > $2/log-2.$1 2>&1
+        echo "Running $1"
+        $1 > log-2.$1 2>&1
     fi
 }
 
-runKivaToFoam . otape17
+
+runKivaToFoam otape17
+
 cp system/controlDict.1st system/controlDict
 runApplication $application
+
 cp system/controlDict.2nd system/controlDict
-restartApplication $application .
+restartApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/combustion/fireFoam/les/smallPoolFire2D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -10,4 +12,4 @@ runApplication createPatch -overwrite
 # Run
 runApplication fireFoam
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhoCentralFoam/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -12,19 +13,25 @@ LadenburgJet60psi \
 biconic25-55Run35 \
 "
 
-for case in $cases
+for caseName in $cases
 do
-    if [ "$case" = "shockTube" ]
+(
+    cd $caseName || exit
+
+    if [ "$caseName" = shockTube ]
     then
-        rm -rf $case/0
-        cp -r $case/0.org $case/0
+        rm -rf 0
+        cp -r 0.org 0
     fi
 
-    (cd $case && foamCleanTutorials && cleanSamples)
+    foamCleanTutorials && cleanSamples
 
-    if [ "$case" = "biconic25-55Run35" ]
+    if [ "$caseName" = "biconic25-55Run35" ]
     then
-        rm -rf $case/constant/polyMesh/boundary
-        wclean $case/datToFoam
+        rm -rf constant/polyMesh/boundary
+        wclean datToFoam
     fi
+)
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhoCentralFoam/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -14,26 +16,30 @@ LadenburgJet60psi \
 biconic25-55Run35 \
 "
 
-moveTimeMeshToConstant ()
+moveTimeMeshToConstant()
 {
    DT=`foamInfoExec -times | tail -1`
-   if [ "$DT" != 0 ] ; then
+   if [ "$DT" != 0 ]
+   then
        mv ${DT}/polyMesh/* constant/polyMesh
        rm -rf ${DT}
    fi
 }
 
-for case in $cases
-do
-    (cd $case && runApplication blockMesh)
-#
-    if [ "$case" = "shockTube" ] ; then
-        (cd $case && runApplication setFields)
-    fi
-#
-    if [ "$case" = "biconic25-55Run35" ] ; then
-        cd $case
 
+for caseName in $cases
+do
+(
+    cd $caseName || exit
+
+    runApplication blockMesh
+
+    case "$caseName" in
+    shockTube)
+        runApplication setFields
+        ;;
+
+    biconic25-55Run35)
         wmake datToFoam
         runApplication datToFoam grid256.dat
 
@@ -46,9 +52,11 @@ do
         mv $CONST/polyMesh/boundary $CONST/polyMesh/boundary.bak
         sed -f $CONST/wedgeScr $CONST/polyMesh/boundary.bak > $CONST/polyMesh/boundary
         rm $CONST/polyMesh/boundary.bak
+        ;;
+    esac
 
-        cd ..
-    fi
-#
-    (cd $case && runApplication $application)
+    runApplication $application
+)
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhoCentralFoam/biconic25-55Run35/sampleCone

@@ -1,43 +1,54 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 #
 # FUNCTIONS
 #
-printUsage () {
-cat <<EOF
-Usage: $0 [options]
-Runs a set of samples across the cone face and concatenates output files
+usage()
+{
+    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
 
-Options are:
--l         -latestTime option for sample
--h         help
-EOF
+    cat<<USAGE
+Usage: ${0##*/} [OPTION]
+
+options:
+  -l         -latestTime option for sample
+  -h         help
+
+Runs a set of samples across the cone face and concatenates output files
+USAGE
+    exit 1
 }
 
-LATEST_TIME=""
+
+unset timeOpt
 
 OPTS=`getopt hl $*`
-if [ $? -ne 0 ] ; then
-    echo "Aborting due to invalid option"
-    printUsage
-    exit 1
-fi
+[ $? -eq 0 ] || usage "Aborting due to invalid option"
+
 eval set -- "$OPTS"
-while [ $1 != -- ]; do
+while [ $1 != -- ]
+do
     case $1 in
-        -l) LATEST_TIME="-latestTime";;
-        -h) printUsage; exit 1;;
+    -l)
+        timeOpt="-latestTime"
+        ;;
+    -h)
+        usage
+        ;;
     esac
     shift
 done
 shift
 
-sample ${LATEST_TIME}
+sample $timeOpt
 SDIR="sets"
 LSDIR=`ls $SDIR | head -1`
 EXAMPLE_FILE=`ls -1 $SDIR/${LSDIR}/* | head -1`
 FS=`basename $EXAMPLE_FILE | cut -d_ -f2-`
 for d in $SDIR/*
 do
-   cat ${d}/cone25_${FS} ${d}/cone55_${FS} ${d}/base_${FS} > ${d}/biconic_${FS}
+    cat ${d}/cone25_${FS} ${d}/cone55_${FS} ${d}/base_${FS} > ${d}/biconic_${FS}
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhoSonicFoam/shockTube/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -9,3 +11,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication setFields
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhopSonicFoam/shockTube/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,3 +7,5 @@
 rm -rf 0
 cp -r 0.org 0
 cleanCase
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/rhopSonicFoam/shockTube/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication setFields
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicFoam/laminar/shockTube/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -7,3 +8,5 @@ cleanCase
 rm -rf 0
 cp -r 0.org 0
 cleanSamples
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicFoam/laminar/shockTube/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -9,3 +11,5 @@ runApplication setFields
 runApplication $application
 runApplication foamCalc mag U
 runApplication sample
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicFoam/ras/nacaAirfoil/Allrun

@@ -1,11 +1,13 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Get application name
 application=`getApplication`
 
-runStarToFoam ()
+runStarToFoam()
 {
     if [ -f log.star3ToFoam -o -f log.starToFoam ]
     then
@@ -24,3 +26,5 @@ rm temp
 runApplication $application
 
 # end-of-file
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicLiquidFoam/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 removeCase decompressionTankFine
 foamCleanTutorials cases
+
+# ----------------------------------------------------------------- end-of-file

tutorials/compressible/sonicLiquidFoam/Allrun

@@ -1,14 +1,17 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Set application name
 application="sonicLiquidFoam"
 
-setDecompressionTankFine ()
+setDecompressionTankFine()
 {
-    blockMeshDict="$1/constant/polyMesh/blockMeshDict"
-    controlDict="$1/system/controlDict"
+    blockMeshDict="constant/polyMesh/blockMeshDict"
+    controlDict="system/controlDict"
+
     sed \
     -e s/"30 20"/"120 80"/g \
     -e s/"30 5"/"120 20"/g \
@@ -16,6 +19,7 @@ setDecompressionTankFine ()
     -e s/"30 95"/"120 380"/g \
     $blockMeshDict > temp.$$
     mv temp.$$ $blockMeshDict
+
     sed \
     -e s/"\(deltaT[ \t]*\) 5e-07;"/"\1 1e-07;"/g \
     -e s/"\(endTime[ \t]*\) 0.00025;"/"\1 0.00015;"/g \
@@ -23,16 +27,22 @@ setDecompressionTankFine ()
     mv temp.$$ $controlDict
 }
 
+
 # Do decompressionTank
-(cd decompressionTank && foamRunTutorials)
+( cd decompressionTank && foamRunTutorials )
 
 # Clone case
 cloneCase decompressionTank decompressionTankFine
 
-cd decompressionTankFine
+(
+    cd decompressionTankFine || exit
+
     # Modify case
-    setDecompressionTankFine .
+    setDecompressionTankFine
+
     # And execute
     runApplication blockMesh
     runApplication $application
-cd ..
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/freeSpacePeriodic/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf 0/lagrangian 0/dsmcSigmaTcRMax
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/freeSpacePeriodic/Allrun

@@ -1,7 +1,11 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 runApplication blockMesh
 runApplication dsmcInitialise
 runApplication dsmcFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/freeSpaceStream/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf 0/lagrangian 0/dsmcSigmaTcRMax
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/freeSpaceStream/Allrun

@@ -1,7 +1,11 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 runApplication blockMesh
 runApplication dsmcInitialise
 runApplication dsmcFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/supersonicCorner/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf 0/lagrangian 0/dsmcSigmaTcRMax
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/supersonicCorner/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ runParallel dsmcInitialise 4
 runParallel dsmcFoam 4
 runApplication reconstructPar -noLagrangian
 
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/wedge15Ma5/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf 0/lagrangian 0/dsmcSigmaTcRMax
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/dsmcFoam/wedge15Ma5/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ runParallel dsmcInitialise 4
 runParallel dsmcFoam 4
 runApplication reconstructPar -noLagrangian
 
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/Allclean

@@ -1,22 +1,30 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
-cd periodicCubeArgon
+(
+    cd periodicCubeArgon || exit
+
     rm -rf 0/*
     rm -f Ar-Ar
     rm -f electrostatic
     rm -f constant/idList
     rm -rf constant/polyMesh/sets
     cleanCase
-cd ..
+)
+
+
+(
+    cd periodicCubeWater || exit
 
-cd periodicCubeWater
     rm -rf 0/*
     rm -f O-O
     rm -f electrostatic
     rm -f constant/idList
     rm -rf constant/polyMesh/sets
     cleanCase
-cd ..
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/Allrun

@@ -1,18 +1,20 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 application="mdEquilibrationFoam"
 
-cd periodicCubeArgon
-    runApplication blockMesh
-    runApplication mdInitialise
-    runApplication $application
-cd ..
+for caseName in periodicCubeArgon periodicCubeWater
+do
+(
+    cd $caseName || exit
 
-cd periodicCubeWater
     runApplication blockMesh
     runApplication mdInitialise
     runApplication $application
-cd ..
+)
+done
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdFoam/nanoNozzle/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,3 +7,5 @@
 rm -rf constant/polyMesh/sets
 rm -rf processor[0-9]
 cleanCase
+
+# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdFoam/nanoNozzle/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -13,3 +15,5 @@ runParallel mdInitialise 4
 runParallel $application 4
 
 runApplication reconstructPar
+
+# ----------------------------------------------------------------- end-of-file

tutorials/electromagnetics/mhdFoam/Allclean

@@ -1,7 +1,14 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
-(cd hartmann && cleanCase)
-(cd hartmann && cleanSamples)
+(
+    cd hartmann || exit
+
+    cleanCase
+    cleanSamples
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/electromagnetics/mhdFoam/Allrun

@@ -1,11 +1,19 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
 # Set application name
 application="mhdFoam"
 
-(cd hartmann && runApplication blockMesh)
-(cd hartmann && runApplication $application)
-(cd hartmann && runApplication foamCalc components U)
-(cd hartmann && runApplication sample)
+(
+    cd hartmann || exit
+
+    runApplication blockMesh
+    runApplication $application
+    runApplication foamCalc components U
+    runApplication sample
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqPisoFoam/hotRoom/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 cp 0/T.org 0/T
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqPisoFoam/hotRoom/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ compileApplication ../../buoyantPisoFoam/hotRoom/setHotRoom
 runApplication blockMesh
 runApplication setHotRoom
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqSimpleFoam/hotRoom/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 cp 0/T.org 0/T
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqSimpleFoam/hotRoom/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ compileApplication ../../buoyantPisoFoam/hotRoom/setHotRoom
 runApplication blockMesh
 runApplication setHotRoom
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantBoussinesqSimpleFoam/iglooWithFridges/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -6,3 +8,4 @@ runApplication blockMesh
 runApplication snappyHexMesh -overwrite
 runApplication buoyantBoussinesqSimpleFoam
 
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantPisoFoam/hotRoom/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,3 +7,5 @@
 cleanCase
 cp 0/T.org 0/T
 wclean setHotRoom
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantPisoFoam/hotRoom/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -9,3 +11,5 @@ compileApplication setHotRoom
 runApplication blockMesh
 runApplication setHotRoom
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantSimpleFoam/buoyantCavity/Allclean

@@ -1,7 +1,11 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 rm -rf sets
-(cd validation && rm -f *.eps)
+rm -f validation/*.eps
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantSimpleFoam/buoyantCavity/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,4 +10,7 @@ application="buoyantSimpleFoam"
 runApplication blockMesh
 runApplication $application
 runApplication sample -latestTime
-(cd validation && ./createGraphs)
+
+( cd validation && ./createGraphs )
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantSimpleFoam/buoyantCavity/validation/createGraphs

@@ -32,7 +32,8 @@
 #
 #------------------------------------------------------------------------------
 
-createEpsT() {
+createEpsT()
+{
     index=$1
     OF=$2
     EXPT=$3
@@ -54,7 +55,8 @@ EOF
 }
 
 
-createEpsU() {
+createEpsU()
+{
     index=$1
     OF=$2
     EXPT=$3
@@ -78,7 +80,8 @@ EOF
 
 # test if gnuplot exists on the system
 type -P gnuplot &>/dev/null || {
-    echo "gnuplot not found - skipping graph creation" >&2; exit 1;
+    echo "gnuplot not found - skipping graph creation" >&2
+    exit 1
 }
 
 # paths to data
@@ -89,7 +92,8 @@ EXPTDATAROOT=./exptData
 
 # generate temperature profiles
 TSets="1 3 4 5 6 7 9"
-for i in $TSets; do
+for i in $TSets
+do
     echo "    processing temperature profile at y/yMax of 0.$i"
 
     OF="$OFDATAROOT/y0.${i}_T.xy"
@@ -101,7 +105,8 @@ done
 
 # generate velocity profiles
 USets="1 3 4 5 6 7 9"
-for i in $USets; do
+for i in $USets
+do
     echo "    processing velocity profile at y/yMax of 0.$i"
 
     OF="$OFDATAROOT/y0.${i}_U.xy"
@@ -110,6 +115,6 @@ for i in $USets; do
     createEpsU $i $OF $EXPT
 done
 
-echo "done"
+echo Done
 
 #------------------------------------------------------------------------------

tutorials/heatTransfer/buoyantSimpleFoam/hotRoom/Allclean

@@ -1,7 +1,10 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
 cleanCase
 cp 0/T.org 0/T
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/buoyantSimpleFoam/hotRoom/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ compileApplication ../../buoyantPisoFoam/hotRoom/setHotRoom
 runApplication blockMesh
 runApplication setHotRoom
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/chtMultiRegionFoam/multiRegionHeater/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -18,4 +19,4 @@ rm -rf constant/heater/polyMesh
 rm -rf constant/leftSolid/polyMesh
 rm -rf constant/rightSolid/polyMesh
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/chtMultiRegionFoam/multiRegionHeater/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -58,4 +60,4 @@ do
    paraFoam -touch -region $i
 done
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/chtMultiRegionFoam/snappyMultiRegionHeater/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -18,4 +19,4 @@ rm -rf constant/heater/polyMesh
 rm -rf constant/leftSolid/polyMesh
 rm -rf constant/rightSolid/polyMesh
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/heatTransfer/chtMultiRegionFoam/snappyMultiRegionHeater/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -55,4 +57,4 @@ do
    paraFoam -touch -region $i
 done
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/MRFSimpleFoam/mixerVessel2D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -7,3 +9,5 @@ application=`getApplication`
 
 ./makeMesh
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/adjointShapeOptimizationFoam/pitzDaily/0/U

@@ -20,32 +20,32 @@ internalField   uniform (0 0 0);
 
 boundaryField
 {
-    inlet           
+    inlet
     {
         type            fixedValue;
         value           uniform (10 0 0);
     }
 
-    outlet          
+    outlet
     {
         //type            zeroGradient;
         type            inletOutlet;
         inletValue      uniform (0 0 0);
     }
 
-    upperWall       
+    upperWall
     {
         type            fixedValue;
         value           uniform (0 0 0);
     }
 
-    lowerWall       
+    lowerWall
     {
         type            fixedValue;
         value           uniform (0 0 0);
     }
 
-    frontAndBack    
+    frontAndBack
     {
         type            empty;
     }

tutorials/incompressible/adjointShapeOptimizationFoam/pitzDaily/0/Ua

@@ -20,13 +20,13 @@ internalField   uniform (0 0 0);
 
 boundaryField
 {
-    inlet           
+    inlet
     {
         type            fixedValue;
         value           uniform (-1 0 0);
     }
 
-    outlet          
+    outlet
     {
         //type            zeroGradient;
         //type            inletOutlet;
@@ -35,19 +35,19 @@ boundaryField
         value           uniform (0 0 0);
     }
 
-    upperWall       
+    upperWall
     {
         type            fixedValue;
         value           uniform (0 0 0);
     }
 
-    lowerWall       
+    lowerWall
     {
         type            fixedValue;
         value           uniform (0 0 0);
     }
 
-    frontAndBack    
+    frontAndBack
     {
         type            empty;
     }

tutorials/incompressible/adjointShapeOptimizationFoam/pitzDaily/0/p

@@ -20,28 +20,28 @@ internalField   uniform 0;
 
 boundaryField
 {
-    inlet           
+    inlet
     {
         type            zeroGradient;
     }
 
-    outlet          
+    outlet
     {
         type            fixedValue;
         value           uniform 0;
     }
 
-    upperWall       
+    upperWall
     {
         type            zeroGradient;
     }
 
-    lowerWall       
+    lowerWall
     {
         type            zeroGradient;
     }
 
-    frontAndBack    
+    frontAndBack
     {
         type            empty;
     }

tutorials/incompressible/adjointShapeOptimizationFoam/pitzDaily/0/pa

@@ -20,28 +20,28 @@ internalField   uniform 0;
 
 boundaryField
 {
-    inlet           
+    inlet
     {
         type            zeroGradient;
     }
 
-    outlet          
+    outlet
     {
         type            adjointOutletPressure;
         value           uniform 0;
     }
 
-    upperWall       
+    upperWall
     {
         type            zeroGradient;
     }
 
-    lowerWall       
+    lowerWall
     {
         type            zeroGradient;
     }
 
-    frontAndBack    
+    frontAndBack
     {
         type            empty;
     }

tutorials/incompressible/adjointShapeOptimizationFoam/pitzDaily/constant/polyMesh/blockMeshDict

@@ -16,7 +16,7 @@ FoamFile
 
 convertToMeters 0.001;
 
-vertices        
+vertices
 (
     (-20.6 0 -0.5)
     (-20.6 3 -0.5)
@@ -64,7 +64,7 @@ vertices
     (290 16.6 0.5)
 );
 
-blocks          
+blocks
 (
     hex (0 6 7 1 22 28 29 23) (18 7 1) simpleGrading (0.5 1.8 1)
     hex (1 7 8 2 23 29 30 24) (18 10 1) simpleGrading (0.5 4 1)
@@ -81,19 +81,19 @@ blocks
     hex (14 20 21 15 36 42 43 37) (25 13 1) simpleGrading (2.5 0.25 1)
 );
 
-edges           
+edges
 (
 );
 
-patches         
+patches
 (
-    patch inlet 
+    patch inlet
     (
         (0 22 23 1)
         (1 23 24 2)
         (2 24 25 3)
     )
-    patch outlet 
+    patch outlet
     (
         (16 17 39 38)
         (17 18 40 39)
@@ -101,13 +101,13 @@ patches
         (19 20 42 41)
         (20 21 43 42)
     )
-    wall upperWall 
+    wall upperWall
     (
         (3 25 31 9)
         (9 31 37 15)
         (15 37 43 21)
     )
-    wall lowerWall 
+    wall lowerWall
     (
         (0 6 28 22)
         (6 5 27 28)
@@ -115,7 +115,7 @@ patches
         (4 10 32 26)
         (10 16 38 32)
     )
-    empty frontAndBack 
+    empty frontAndBack
     (
         (22 28 29 23)
         (23 29 30 24)

tutorials/incompressible/boundaryFoam/boundaryWallFunctionsProfile/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -7,3 +8,5 @@ cleanCase
 
 rm -rf logs
 rm -f *.eps yPlus_vs_uPlus
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/boundaryFoam/boundaryWallFunctionsProfile/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -9,7 +10,8 @@ exponents="2 3 4 5 6 7 8"
 
 echo "# yPlus vs uPlus" > yPlus_vs_uPlus
 
-for e in $exponents; do
+for e in $exponents
+do
     echo "    Setting nu to 1e-$e"
 
     sed "s/XXX/$e/g" constant/transportProperties.template \
@@ -25,7 +27,8 @@ for e in $exponents; do
 
     mv log.foamLog log.foamLog_$e
 
-    if [ -e logs/yPlus_0 ]; then
+    if [ -e logs/yPlus_0 ]
+    then
         yPlus=`awk < logs/yPlus_0 'END{print $2}'`
         uPlus=`awk < logs/uPlus_0 'END{print $2}'`
 
@@ -39,7 +42,8 @@ done
 # create validation plot
 # test if gnuplot exists on the system
 type -P gnuplot &>/dev/null || {
-    echo "gnuplot not found - skipping graph creation" >&2; exit 1;
+    echo "gnuplot not found - skipping graph creation" >&2
+    exit 1
 }
 graphName="OF_vs_ANAYTICAL.eps"
 
@@ -65,5 +69,6 @@ gnuplot<<EOF
         "yPlus_vs_uPlus" title "OpenFOAM" with points lt 1 pt 6
 EOF
 
+echo Done
 
-echo "done"
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/channelFoam/channel395/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication $application
 runApplication postChannel
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/icoFoam/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -6,17 +7,23 @@
 keepCases="cavity cavityGrade cavityClipped elbow"
 loseCases="cavityFine cavityHighRe"
 
-for case in $keepCases
+for caseName in $keepCases
 do
-    (cd $case && foamCleanTutorials)
+(
+    cd $caseName || exit
 
-    if [ "$case" = "elbow" ]
+    foamCleanTutorials
+
+    if [ "$caseName" = elbow ]
     then
-        rm -rf $case/fluentInterface
+        rm -rf fluentInterface
     fi
+)
 done
 
-for case in $loseCases
+for caseName in $loseCases
 do
-    removeCase $case
+    removeCase $caseName
 done
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/icoFoam/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,34 +9,34 @@ application="icoFoam"
 
 cavityCases="cavity cavityFine cavityGrade cavityHighRe cavityClipped"
 
-runMapFields ()
+runMapFields()
 {
     echo "Running mapFields from $1 to $2"
     mapFields $1 -case $2 -sourceTime latestTime > $2/log.mapFields 2>&1
 }
 
-runMapFieldsConsistent ()
+runMapFieldsConsistent()
 {
     echo "Running mapFields from $1 to $2"
     mapFields $1 -case $2 -sourceTime latestTime -consistent > $2/log.mapFields 2>&1
 }
 
-runFluentMeshToFoam ()
+runFluentMeshToFoam()
 {
     echo "fluentMeshToFoam: converting mesh $2"
     fluentMeshToFoam $2 -case $1 > $1/log.fluentMeshToFoam 2>&1
 }
 
-copySolutionDirs ()
+copySolutionDirs()
 {
     echo "Copying $2/0* directory to $1"
     cp -r $2/0* $1
 }
 
-setCavityFine ()
+setCavityFine()
 {
-    blockMeshDict="$case/constant/polyMesh/blockMeshDict"
-    controlDict="$case/system/controlDict"
+    blockMeshDict="$caseName/constant/polyMesh/blockMeshDict"
+    controlDict="$caseName/system/controlDict"
     sed s/"20 20 1"/"41 41 1"/g $blockMeshDict > temp.$$
     mv temp.$$ $blockMeshDict
     sed \
@@ -47,11 +49,11 @@ setCavityFine ()
     mv temp.$$ $controlDict
 }
 
-setCavityHighRe ()
+setCavityHighRe()
 {
     echo "Setting cavityHighRe to generate a secondary vortex"
-    controlDict="$case/system/controlDict"
-    transportProperties="$case/constant/transportProperties"
+    controlDict="$caseName/system/controlDict"
+    transportProperties="$caseName/constant/transportProperties"
     sed \
     -e s/"\(startFrom[ \t]*\) startTime;"/"\1 latestTime;"/g \
     -e s/"\(endTime[ \t]*\) 0.5;"/"\1 2.0;"/g \
@@ -61,47 +63,53 @@ setCavityHighRe ()
     mv temp.$$ $transportProperties
 }
 
-for case in $cavityCases
+
+for caseName in $cavityCases
 do
-    if [ "$case" = "cavityFine" ]
+    if [ "$caseName" = cavityFine ]
     then
-        cloneCase cavity $case
+        cloneCase cavity $caseName
         setCavityFine
     fi
 
-    if [ "$case" = "cavityHighRe" ]
+    if [ "$caseName" = cavityHighRe ]
     then
-        cloneCase cavity $case
+        cloneCase cavity $caseName
         setCavityHighRe
-        copySolutionDirs $case cavity
+        copySolutionDirs $caseName cavity
     fi
 
-    (cd $case && runApplication blockMesh)
-#
-    if [ "$case" = "cavityFine" -o "$case" = "cavityGrade" ]
-    then
-        runMapFieldsConsistent $previousCase $case
-    fi
+    ( cd $caseName && runApplication blockMesh )
 
-    if [ "$case" = "cavityClipped" ]
-    then
-        cp -r $case/0 $case/0.5
-        runMapFields cavity $case
-        if [ ".`grep nonuniform $case/0.5/U`" != "." ]
+    case "$caseName" in
+    cavityFine | cavityGrade)
+        runMapFieldsConsistent $previousCase $caseName
+        ;;
+    cavityClipped)
+        cp -r $caseName/0 $caseName/0.5
+        runMapFields cavity $caseName
+        if [ ".`grep nonuniform $caseName/0.5/U`" != "." ]
         then
-            sed -f resetFixedWallsScr $case/0.5/U > $case/0.5/U.temp
-            mv $case/0.5/U.temp $case/0.5/U
+            sed -f resetFixedWallsScr $caseName/0.5/U > $caseName/0.5/U.temp
+            mv $caseName/0.5/U.temp $caseName/0.5/U
         fi
-    fi
-#
-    previousCase="$case"
-#
-    (cd $case && runApplication $application)
+        ;;
+    esac
+
+    previousCase="$caseName"
+    ( cd $caseName && runApplication $application )
 done
 
 # elbow case for testing Fluent-FOAM conversion tools
 
 runFluentMeshToFoam elbow elbow/elbow.msh
-(cd elbow && runApplication $application)
-(cd elbow && runApplication foamMeshToFluent)
-(cd elbow && runApplication foamDataToFluent)
+
+(
+    cd elbow || exit
+
+    runApplication $application
+    runApplication foamMeshToFluent
+    runApplication foamDataToFluent
+)
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/pisoFoam/les/pitzDailyDirectMapped/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -8,3 +10,5 @@ application=`getApplication`
 runApplication blockMesh
 runApplication changeDictionary
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/simpleFoam/airFoil2D/Allclean

@@ -1,6 +1,9 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Clean time folders only
 
 rm -rf *[1-9]*
 rm -f log.* 2>/dev/null
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/simpleFoam/airFoil2D/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -6,3 +7,5 @@
 application=`getApplication`
 
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/incompressible/simpleFoam/motorBike/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -6,3 +8,4 @@ runApplication blockMesh
 runApplication snappyHexMesh -overwrite
 runApplication simpleFoam
 
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/coalChemistryFoam/simplifiedSiwek/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -12,3 +13,5 @@ runApplication blockMesh
 runApplication cellSet
 
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/porousExplicitSourceReactingParcelFoam/filter/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -13,3 +14,5 @@ rm -rf postProcessing
 
 # copy 0.org to 0
 cp -r 0.org 0
+
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/porousExplicitSourceReactingParcelFoam/filter/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -22,3 +23,5 @@ createBaffles cycLeft cycLeft -overwrite >& log.createBaffles1
 createBaffles cycRight cycRight -overwrite >& log.createBaffles2
 
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/porousExplicitSourceReactingParcelFoam/verticalChannel/Allclean

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
@@ -11,3 +13,4 @@ cp -r 0.org 0
 
 cleanCase
 
+# ----------------------------------------------------------------- end-of-file

tutorials/lagrangian/porousExplicitSourceReactingParcelFoam/verticalChannel/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -11,3 +13,5 @@ rm -f 0/phi
 
 # run the solver
 runApplication porousExplicitSourceReactingParcelFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/mesh/snappyHexMesh/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 exit 0
 
@@ -7,3 +8,4 @@ exit 0
 
 # This dummy Allrun script avoids meshing these cases twice.
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/cavitatingFoam/les/Allclean

@@ -1,17 +1,23 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
 
-cd throttle
+(
+    cd throttle || exit
+
     rm -rf constant/polyMesh/sets > /dev/null 2>&1
     rm -rf 0/polyMesh > /dev/null 2>&1
     rm system/cellSetDict > /dev/null 2>&1
 
     cleanCase
-cd ..
+)
+
+
+(
+    cd throttle3D || exit
 
-cd throttle3D
     rm -rf constant/polyMesh/sets > /dev/null 2>&1
     rm -rf 0 > /dev/null 2>&1
     cp -r 0.org 0
@@ -19,5 +25,6 @@ cd throttle3D
     rm -rf processor[0-9] > /dev/null 2>&1
 
     cleanCase
-cd ..
+)
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/cavitatingFoam/les/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -20,13 +21,19 @@ refineMeshByCellSet()
    done
 }
 
-cd throttle
+
+(
+    cd throttle || exit
+
     runApplication blockMesh
     refineMeshByCellSet 1 2 3
     runApplication $application
-cd ..
+)
+
+
+(
+    cd throttle3D || exit
 
-cd throttle3D
     cp -r 0.org 0
 
     runApplication blockMesh
@@ -38,5 +45,6 @@ cd throttle3D
     runApplication decomposePar
     runParallel $application 4
     runApplication reconstructPar
-cd ..
+)
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/cavitatingFoam/ras/throttle/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -7,3 +8,5 @@ rm -rf constant/polyMesh/sets > /dev/null 2>&1
 rm -rf 0/polyMesh > /dev/null 2>&1
 rm system/cellSetDict > /dev/null 2>&1
 cleanCase
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/cavitatingFoam/ras/throttle/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -23,3 +24,4 @@ runApplication blockMesh
 refineMeshByCellSet 1 2 3
 runApplication $application
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/compressibleInterFoam/les/depthCharge2D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -10,3 +12,5 @@ cp 0/alpha1.org 0/alpha1
 cp 0/p.org 0/p
 runApplication setFields
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/compressibleInterFoam/les/depthCharge3D/Allclean

@@ -1,5 +1,8 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf processor*
 rm -rf 0/p.gz 0/alpha1.gz
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/compressibleInterFoam/les/depthCharge3D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -12,3 +14,5 @@ runApplication setFields
 runApplication decomposePar
 runParallel $application 4
 runApplication reconstructPar
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/damBreakWithObstacle/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication setSet -batch createObstacle.setSet
 runApplication subsetMesh c0 -patch walls
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/floatingObject/Allclean

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial clean functions
 . $WM_PROJECT_DIR/bin/tools/CleanFunctions
@@ -8,3 +9,4 @@ rm -rf 0 > /dev/null 2>&1
 
 cleanCase
 
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/floatingObject/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -24,4 +25,4 @@ cp -r 0.org 0 > /dev/null 2>&1
 runApplication setFields
 runApplication $application
 
-# -----------------------------------------------------------------------------
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank2D/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank2D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank2D3DoF/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank2D3DoF/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D3DoF/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D3DoF/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D6DoF/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz probes wallPressure pRefProbe
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/sloshingTank3D6DoF/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -7,3 +9,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/testTubeMixer/Allclean

@@ -1,4 +1,7 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 foamCleanTutorials cases
 rm -rf 0/alpha1.gz
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interDyMFoam/ras/testTubeMixer/Allrun

@@ -1,4 +1,6 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
+
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
@@ -6,3 +8,5 @@ runApplication blockMesh
 cp 0/alpha1.org 0/alpha1
 runApplication setFields
 runApplication interDyMFoam
+
+# ----------------------------------------------------------------- end-of-file

tutorials/multiphase/interFoam/MRFInterFoam/mixerVessel2D/Allrun

@@ -1,4 +1,5 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
@@ -7,3 +8,5 @@ application=`getApplication`
 
 runApplication ./makeMesh
 runApplication $application
+
+# ----------------------------------------------------------------- end-of-file