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ENH: optionally limit systemCall function-object to master only (closes #729)

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This commit is contained in:
Mark Olesen
2018-02-09 19:24:31 +01:00
parent 3e3c97397e
commit 88f4b6ca8d
19 changed files with 790 additions and 44 deletions
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80
src/functionObjects/utilities/systemCall/systemCall.C
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@ -3,7 +3,7 @@
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2016 OpenFOAM Foundation
\\/ M anipulation |
\\/ M anipulation | Copyright (C) 2018 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
@ -46,6 +46,36 @@ namespace functionObjects
}
// * * * * * * * * * * * * Protected Member Functions * * * * * * * * * * * //
Foam::label Foam::functionObjects::systemCall::dispatch(const stringList& calls)
{
if (calls.empty())
{
return 0;
}
label nCalls = 0;
if (!masterOnly_ || Pstream::master())
{
for (const string& call : calls)
{
Foam::system(call); // Handles empty command as a successful no-op.
++nCalls;
}
}
// MPI barrier
if (masterOnly_)
{
Pstream::scatter(nCalls);
}
return nCalls;
}
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
Foam::functionObjects::systemCall::systemCall
@ -58,27 +88,27 @@ Foam::functionObjects::systemCall::systemCall
functionObject(name),
executeCalls_(),
endCalls_(),
writeCalls_()
writeCalls_(),
masterOnly_(false)
{
read(dict);
}
// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
Foam::functionObjects::systemCall::~systemCall()
{}
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
bool Foam::functionObjects::systemCall::read(const dictionary& dict)
{
functionObject::read(dict);
executeCalls_.clear();
writeCalls_.clear();
endCalls_.clear();
dict.readIfPresent("executeCalls", executeCalls_);
dict.readIfPresent("endCalls", endCalls_);
dict.readIfPresent("writeCalls", writeCalls_);
dict.readIfPresent("endCalls", endCalls_);
masterOnly_ = dict.lookupOrDefault("master", false);
if (executeCalls_.empty() && endCalls_.empty() && writeCalls_.empty())
{
@ -89,8 +119,8 @@ bool Foam::functionObjects::systemCall::read(const dictionary& dict)
else if (!dynamicCode::allowSystemOperations)
{
FatalErrorInFunction
<< "Executing user-supplied system calls is not enabled by "
<< "default because of " << nl
<< "Executing user-supplied system calls may not be enabled by "
<< "default due to potential " << nl
<< "security issues. If you trust the case you can enable this "
<< "facility by " << nl
<< "adding to the InfoSwitches setting in the system controlDict:"
@ -109,33 +139,21 @@ bool Foam::functionObjects::systemCall::read(const dictionary& dict)
bool Foam::functionObjects::systemCall::execute()
{
forAll(executeCalls_, calli)
{
Foam::system(executeCalls_[calli]);
}
return true;
}
bool Foam::functionObjects::systemCall::end()
{
forAll(endCalls_, calli)
{
Foam::system(endCalls_[calli]);
}
dispatch(executeCalls_);
return true;
}
bool Foam::functionObjects::systemCall::write()
{
forAll(writeCalls_, calli)
{
Foam::system(writeCalls_[calli]);
}
dispatch(writeCalls_);
return true;
}
bool Foam::functionObjects::systemCall::end()
{
dispatch(endCalls_);
return true;
}

34
src/functionObjects/utilities/systemCall/systemCall.H
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@ -28,7 +28,7 @@ Group
grpUtilitiesFunctionObjects
Description
Executes system calls, entered in the form of a string lists.
Executes system calls, entered in the form of string lists.
Calls can be made at the following points in the calculation:
- every time step
@ -36,7 +36,7 @@ Description
- end of the calculation
Usage
Example of function object specification:
Example of the function object specification:
\verbatim
systemCall1
{
@ -49,11 +49,11 @@ Usage
);
writeCalls
(
"echo \*\*\* writing data \*\*\*"
"echo === writing data ==="
);
endCalls
(
"echo \*\*\* writing .bashrc \*\*\*"
"echo === echoing .bashrc ==="
"cat ~/.bashrc"
"echo \*\*\* done \*\*\*"
);
@ -67,6 +67,7 @@ Usage
executeCalls | list of calls on execute | yes |
writeCalls | list of calls on write | yes |
endCalls | list of calls on end | yes |
master | execute on master only | no | false
\endtable
Note
@ -75,6 +76,9 @@ Note
\c allowSystemOperations must be set to '1'; otherwise, system calls will
not be allowed.
Additionally, since the system commands are normally sent via the shell,
special shell character may require backslash escaping.
See also
Foam::functionObject
Foam::functionObjects::timeControl
@ -118,16 +122,20 @@ protected:
//- List of calls to execute - write steps
stringList writeCalls_;
//- Perform system calls on the master only
bool masterOnly_;
private:
// Private member functions
// Protected Member Functions
//- Dispatch specified calls
label dispatch(const stringList& calls);
//- Disallow default bitwise copy construct
systemCall(const systemCall&);
systemCall(const systemCall&) = delete;
//- Disallow default bitwise assignment
void operator=(const systemCall&);
void operator=(const systemCall&) = delete;
public:
@ -148,22 +156,22 @@ public:
//- Destructor
virtual ~systemCall();
virtual ~systemCall() = default;
// Member Functions
//- Read the system calls
virtual bool read(const dictionary&);
virtual bool read(const dictionary& dict);
//- Execute the "executeCalls" at each time-step
virtual bool execute();
//- Execute the "endCalls" at the final time-loop
virtual bool end();
//- Write, execute the "writeCalls"
virtual bool write();
//- Execute the "endCalls" at the final time-loop
virtual bool end();
};

52
tutorials/IO/systemCall/0.orig/U Normal file
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@ -0,0 +1,52 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class volVectorField;
location "0";
object U;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#include "include/initialConditions"
dimensions [0 1 -1 0 0 0 0];
internalField uniform $flowVelocity;
boundaryField
{
#includeEtc "caseDicts/setConstraintTypes"
#include "include/fixedInlet"
outlet
{
type inletOutlet;
inletValue uniform (0 0 0);
value $internalField;
}
lowerWall
{
type fixedValue;
value $internalField;
}
motorBikeGroup
{
type noSlip;
}
#include "include/frontBackUpperPatches"
}
// ************************************************************************* //

15
tutorials/IO/systemCall/0.orig/include/fixedInlet Normal file
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@ -0,0 +1,15 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
inlet
{
type fixedValue;
value $internalField;
}
// ************************************************************************* //

19
tutorials/IO/systemCall/0.orig/include/frontBackUpperPatches Normal file
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@ -0,0 +1,19 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
upperWall
{
type slip;
}
frontAndBack
{
type slip;
}
// ************************************************************************* //

14
tutorials/IO/systemCall/0.orig/include/initialConditions Normal file
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@ -0,0 +1,14 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
flowVelocity (20 0 0);
pressure 0;
turbulentKE 0.24;
turbulentOmega 1.78;
// ************************************************************************* //

53
tutorials/IO/systemCall/0.orig/k Normal file
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@ -0,0 +1,53 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class volScalarField;
object k;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#include "include/initialConditions"
dimensions [0 2 -2 0 0 0 0];
internalField uniform $turbulentKE;
boundaryField
{
#includeEtc "caseDicts/setConstraintTypes"
//- Define inlet conditions
#include "include/fixedInlet"
outlet
{
type inletOutlet;
inletValue $internalField;
value $internalField;
}
lowerWall
{
type kqRWallFunction;
value $internalField;
}
motorBikeGroup
{
type kqRWallFunction;
value $internalField;
}
#include "include/frontBackUpperPatches"
}
// ************************************************************************* //

64
tutorials/IO/systemCall/0.orig/nut Normal file
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@ -0,0 +1,64 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class volScalarField;
location "0";
object nut;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
dimensions [0 2 -1 0 0 0 0];
internalField uniform 0;
boundaryField
{
#includeEtc "caseDicts/setConstraintTypes"
frontAndBack
{
type calculated;
value uniform 0;
}
inlet
{
type calculated;
value uniform 0;
}
outlet
{
type calculated;
value uniform 0;
}
lowerWall
{
type nutkWallFunction;
value uniform 0;
}
upperWall
{
type calculated;
value uniform 0;
}
motorBikeGroup
{
type nutkWallFunction;
value uniform 0;
}
}
// ************************************************************************* //

52
tutorials/IO/systemCall/0.orig/omega Normal file
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@ -0,0 +1,52 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class volScalarField;
object omega;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#include "include/initialConditions"
dimensions [0 0 -1 0 0 0 0];
internalField uniform $turbulentOmega;
boundaryField
{
#includeEtc "caseDicts/setConstraintTypes"
#include "include/fixedInlet"
outlet
{
type inletOutlet;
inletValue $internalField;
value $internalField;
}
lowerWall
{
type omegaWallFunction;
value $internalField;
}
motorBikeGroup
{
type omegaWallFunction;
value $internalField;
}
#include "include/frontBackUpperPatches"
}
// ************************************************************************* //

51
tutorials/IO/systemCall/0.orig/p Normal file
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@ -0,0 +1,51 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class volScalarField;
object p;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#include "include/initialConditions"
dimensions [0 2 -2 0 0 0 0];
internalField uniform $pressure;
boundaryField
{
#includeEtc "caseDicts/setConstraintTypes"
inlet
{
type zeroGradient;
}
outlet
{
type fixedValue;
value $internalField;
}
lowerWall
{
type zeroGradient;
}
motorBikeGroup
{
type zeroGradient;
}
#include "include/frontBackUpperPatches"
}
// ************************************************************************* //

13
tutorials/IO/systemCall/Allrun Executable file
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@ -0,0 +1,13 @@
#!/bin/sh
cd ${0%/*} || exit 1 # Run from this directory
. $WM_PROJECT_DIR/bin/tools/RunFunctions # Tutorial run functions
runApplication blockMesh
runApplication decomposePar
#- For parallel running: set the initial fields
restore0Dir -processor
runParallel $(getApplication)
#------------------------------------------------------------------------------

21
tutorials/IO/systemCall/constant/transportProperties Normal file
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@ -0,0 +1,21 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
object transportProperties;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
transportModel Newtonian;
nu 1.5e-05;
// ************************************************************************* //

28
tutorials/IO/systemCall/constant/turbulenceProperties Normal file
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@ -0,0 +1,28 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
object turbulenceProperties;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
simulationType RAS;
RAS
{
RASModel kOmegaSST;
turbulence on;
printCoeffs on;
}
// ************************************************************************* //

86
tutorials/IO/systemCall/system/blockMeshDict Normal file
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@ -0,0 +1,86 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
object blockMeshDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
scale 1;
vertices
(
(-5 -4 0)
(15 -4 0)
(15 4 0)
(-5 4 0)
(-5 -4 8)
(15 -4 8)
(15 4 8)
(-5 4 8)
);
blocks
(
hex (0 1 2 3 4 5 6 7) (20 8 8) simpleGrading (1 1 1)
);
edges
(
);
boundary
(
frontAndBack
{
type patch;
faces
(
(3 7 6 2)
(1 5 4 0)
);
}
inlet
{
type patch;
faces
(
(0 4 7 3)
);
}
outlet
{
type patch;
faces
(
(2 6 5 1)
);
}
lowerWall
{
type wall;
faces
(
(0 3 2 1)
);
}
upperWall
{
type patch;
faces
(
(4 5 6 7)
);
}
);
// ************************************************************************* //

53
tutorials/IO/systemCall/system/controlDict Normal file
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@ -0,0 +1,53 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
object controlDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
application simpleFoam;
startFrom latestTime;
startTime 0;
stopAt endTime;
endTime 4;
deltaT 1;
writeControl timeStep;
writeInterval 100;
purgeWrite 0;
writeFormat binary;
writePrecision 6;
writeCompression off;
timeFormat general;
timePrecision 6;
runTimeModifiable true;
functions
{
#include "systemCall"
}
// ************************************************************************* //

26
tutorials/IO/systemCall/system/decomposeParDict Normal file
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@ -0,0 +1,26 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
object decomposeParDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
numberOfSubdomains 6;
method hierarchical;
coeffs
{
n (3 2 1);
}
// ************************************************************************* //

58
tutorials/IO/systemCall/system/fvSchemes Normal file
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@ -0,0 +1,58 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
object fvSchemes;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
ddtSchemes
{
default steadyState;
}
gradSchemes
{
default Gauss linear;
grad(U) cellLimited Gauss linear 1;
}
divSchemes
{
default none;
div(phi,U) bounded Gauss linearUpwindV grad(U);
div(phi,k) bounded Gauss upwind;
div(phi,omega) bounded Gauss upwind;
div((nuEff*dev2(T(grad(U))))) Gauss linear;
}
laplacianSchemes
{
default Gauss linear corrected;
}
interpolationSchemes
{
default linear;
}
snGradSchemes
{
default corrected;
}
wallDist
{
method meshWave;
}
// ************************************************************************* //

86
tutorials/IO/systemCall/system/fvSolution Normal file
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@ -0,0 +1,86 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: plus |
| \\ / A nd | Web: www.OpenFOAM.com |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
object fvSolution;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
solvers
{
p
{
solver GAMG;
smoother GaussSeidel;
tolerance 1e-7;
relTol 0.01;
}
Phi
{
$p;
}
U
{
solver smoothSolver;
smoother GaussSeidel;
tolerance 1e-8;
relTol 0.1;
nSweeps 1;
}
k
{
solver smoothSolver;
smoother GaussSeidel;
tolerance 1e-8;
relTol 0.1;
nSweeps 1;
}
omega
{
solver smoothSolver;
smoother GaussSeidel;
tolerance 1e-8;
relTol 0.1;
nSweeps 1;
}
}
SIMPLE
{
nNonOrthogonalCorrectors 0;
consistent yes;
}
potentialFlow
{
nNonOrthogonalCorrectors 10;
}
relaxationFactors
{
equations
{
U 0.9;
k 0.7;
omega 0.7;
}
}
cache
{
grad(U);
}
// ************************************************************************* //

29
tutorials/IO/systemCall/system/systemCall Normal file
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@ -0,0 +1,29 @@
// -*- C++ -*-
// An example of using systemCall
system
{
type systemCall;
libs ("libutilityFunctionObjects.so");
// Execute on the master process only
master true;
executeCalls
(
"echo execute: shell $$"
);
writeCalls
(
"echo \*\*\* writing data \*\*\*"
);
endCalls
(
"echo \*\*\* end of run \*\*\*"
"grep application system/controlDict"
"echo \*\*\* done \*\*\*"
);
}
// ************************************************************************* //