ENH: Doxygen updates

bin/tools/doxyFilter.sed

@@ -175,7 +175,7 @@ s/.*\*\//\*\//
 
 
 # convert /heading in source files to bold font and add some space
-s#\\heading \(.*\)#<br><b>\1</b>#g
+s#\\heading \(.*\)#<br><b>\1</b><br>#g
 
 # add a linebreak
 s#\\linebreak#<br>#g

doc/Doxygen/Doxyfile

@@ -769,6 +769,10 @@ INPUT                  = $(WM_PROJECT_DIR)/src \
                          $(WM_PROJECT_DIR)/applications/utilities \
                          $(WM_PROJECT_DIR)/applications/solvers
 
+#For testing only
+#INPUT                  = $(WM_PROJECT_DIR)/src/OpenFOAM/global \
+#                         $(WM_PROJECT_DIR)/applications/solvers/incompressible
+
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
 # libiconv (or the iconv built into libc) for the transcoding. See the libiconv
@@ -1172,7 +1176,7 @@ HTML_DYNAMIC_SECTIONS  = NO
 # Minimum value: 0, maximum value: 9999, default value: 100.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_INDEX_NUM_ENTRIES = 100
+HTML_INDEX_NUM_ENTRIES = 2
 
 # If the GENERATE_DOCSET tag is set to YES, additional index files will be
 # generated that can be used as input for Apple's Xcode 3 integrated development
@@ -1421,7 +1425,7 @@ EXT_LINKS_IN_WINDOW    = NO
 # Minimum value: 8, maximum value: 50, default value: 10.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-FORMULA_FONTSIZE       = 10
+FORMULA_FONTSIZE       = 12
 
 # Use the FORMULA_TRANPARENT tag to determine whether or not the images
 # generated for formulas are transparent PNGs. Transparent PNGs are not

doc/Doxygen/_Footer

@@ -2,7 +2,7 @@
   </div> <!-- main -->
   <div class="footer">
     <p>
-      Copyright&nbsp;&copy;&nbsp;2011-2013&nbsp;
+      Copyright&nbsp;&copy;&nbsp;2011-2016&nbsp;
       <a href="http://www.openfoam.com/about">OpenFOAM</a>
       |
       OPENFOAM&reg; is a registered

doc/Doxygen/css/cfdLayout.css

@@ -71,7 +71,7 @@ p:after {
     border:3px solid rgb(175,175,175);
     border-bottom-width: 0;
     margin-top:10px;
-    background:#e1f0e1;
+    background:#d5e1f0;
     overflow:visible !important /*Firefox*/;
     overflow:hidden /*IE6*/;
 }
@@ -265,12 +265,12 @@ p:after {
 }
 
 div.contents a {
-    color:rgb(85,144,112);
+    color:rgb(70,122,167);
     font-weight:bold;
     text-decoration:none;
 }
 div.contents a:hover {
-    color:rgb(56,94,73);
+    color:rgb(42,90,138);
     text-decoration:underline;
 }
 /*
@@ -342,3 +342,4 @@ div.crosslinks {
 }
 
 } /* end media print */
+

doc/Doxygen/css/cfdNav.css

@@ -271,7 +271,7 @@ nav3-bullet
     padding:0 0 0 10px;
     background:url(img/bg_bullet_full_1.gif) no-repeat 0px 50%;
     text-decoration:none;
-    color:rgb(56,94,73);
+    color:rgb(70,122,167);
     font-weight:bold;
     font-size:120%;
 }
@@ -282,7 +282,7 @@ nav3-bullet
     padding:0 0 0 10px;
     background:url(img/bg_bullet_half_1.gif) no-repeat 0px 50%;
     text-decoration:none;
-    color:rgb(56,94,73);
+    color:rgb(70,122,167);
     font-weight:normal;
     font-size:120%;
 }
@@ -570,3 +570,4 @@ div.navpath, div.summary
 {
     background-color:#d5e1f0 !important;
 }
+

doc/Doxygen/css/doxyMod.css

@@ -86,15 +86,34 @@ tr.memlist
 }
 
 .OFTable th {
+    height:20px;
     text-align: left;
     padding: 5px;
     border-bottom: 2px solid rgb(175,175,175);
 }
 
-.OFTable td {
+.OFTable tr td {
+    height:20px;
     padding-left: 5px;
 }
 
+.OFPlainTable {
+    border: 0px;
+    margin-top: 10px;
+    margin-bottom: 10px;
+/*    background-color: #F0F0F0; */
+/*    padding: 3px 7px 2px; */
+}
+
+.OFPlainTable th {
+    height: 20px;
+    text-align: left;
+/*    padding: 5px; */
+}
+
+.OFPlainTable tr td {
+    height: 20px;
+    padding-left: 5px;
 div.line,
 span.comment,
 span.keyword,

doc/Doxygen/css/doxygen.css

@@ -86,13 +86,13 @@ div.navtab {
 /* @group Link Styling */
 
 a {
-	color: rgb(85,144,112);
+	color: #153788;
 	font-weight: normal;
 	text-decoration: none;
 }
 
 .contents a:visited {
-	color: rgb(85,144,112);
+	color: #1b77c5;
 }
 
 a:hover {
@@ -546,7 +546,7 @@ table.doxtable {
 }
 
 table.doxtable td, table.doxtable th {
-	border: 1px solid rgb(85,144,112);
+	border: 1px solid #153788;
 	padding: 3px 7px 2px;
 }
 

src/OpenFOAM/global/foamDoc.H

@@ -33,12 +33,12 @@ License
     and academic organisations.  OpenFOAM has an extensive range of features to
     solve anything from complex fluid flows involving chemical reactions,
     turbulence and heat transfer, to solid dynamics and electromagnetics.
-    <a href="http://www.openfoam.com/features">More ...</a>
+    <a href="http://www.openfoam.com/documentation">More ...</a>
 
 
 \section layout Code Layout
 
-    The OpenFOAM source code comprises of four main components:
+    The OpenFOAM source code has four main components:
     - src:
         the core OpenFOAM source code
 
@@ -56,8 +56,9 @@ License
 
 \section usingTheCode Using the code
 
-    - \subpage pagePostProcessing
+    - \subpage pageSolvers
     - \subpage pageBoundaryConditions
+    - \subpage pagePostProcessing
 
 
 \*---------------------------------------------------------------------------*/

src/TurbulenceModels/turbulenceModels/DES/DESModel/DESModelDoc.H

@@ -23,7 +23,7 @@ License
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-\defgroup grpDESTurbulence DES
+\defgroup grpDESTurbulence DES turbulence
 @{
     \ingroup grpTurbulence
     This group contains DES turbulence models.

src/TurbulenceModels/turbulenceModels/RAS/derivedFvPatchFields/RASBoundaryConditionsDoc.H

@@ -29,11 +29,4 @@ License
     This group contains RAS turbulence model boundary conditions
 @}
 
-\defgroup grpWallFunctions RAS wall functions
-@{
-    \ingroup grpRASBoundaryConditions
-    This group contains RAS turbulence model wall functions
-@}
-
-
 \*---------------------------------------------------------------------------*/

src/TurbulenceModels/turbulenceModels/derivedFvPatchFields/turbulenceBoundaryConditionsDoc.H

@@ -23,13 +23,13 @@ License
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-\defgroup grpTurbulenceBoundaryConditions turbulence boundary conditions
+\defgroup grpTurbulenceBoundaryConditions Turbulence boundary conditions
 @{
     \ingroup grpTurbulence
     This group contains turbulence model boundary conditions
 @}
 
-\defgroup grpWallFunctions wall functions
+\defgroup grpWallFunctions Wall functions
 @{
     \ingroup grpTurbulenceBoundaryConditions
     This group contains turbulence model wall functions