Merge branch 'master' of /home/dm4/OpenFOAM/OpenFOAM-dev into feature/cvMesh

Allwmake

@@ -26,12 +26,12 @@ else
 fi
 
 # build OpenFOAM libraries and applications
-src/Allwmake
-applications/Allwmake
+src/Allwmake $*
+applications/Allwmake $*
 
 if [ "$1" = doc ]
 then
-    doc/Allwmake
+    doc/Allwmake $*
 fi
 
 # ----------------------------------------------------------------- end-of-file

applications/Allwmake

@@ -16,7 +16,7 @@ wmakeCheckPwd "$WM_PROJECT_DIR/applications" || {
 
 set -x
 
-wmake all utilities
-wmake all solvers
+wmake all utilities $*
+wmake all solvers $*
 
 # ----------------------------------------------------------------- end-of-file

applications/solvers/combustion/PDRFoam/PDRModels/XiGModels/basicXiSubG/basicXiSubG.H

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2013 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -22,8 +22,7 @@ License
     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
 Class
-    Foam::XiGModel::basicSubGrid
-
+    Foam::XiGModels::basicSubGrid
 
 Description
 
@@ -39,13 +38,14 @@ Description
 
     and the removal:
 
-    \f[ - k_{1} /frac{\vert \dwea{\vec{U}} \vert}{L_{sub}}
-    \frac{\Xi_{sub}-1}{\Xi_{sub}} \f]
+    \f[
+        - k_{1} /frac{\vert \dwea{\vec{U}} \vert}{L_{sub}}
+        \frac{\Xi_{sub}-1}{\Xi_{sub}}
+    \f]
 
     Finally, \f$ G_{sub} \f$ is added to generation rate \f$ G_{in} \f$
     due to the turbulence.
 
-
 SourceFiles
     basicSubGrid.C
 

applications/solvers/combustion/PDRFoam/XiModels/XiEqModels/SCOPEXiEq/SCOPEXiEq.H

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2013 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -22,7 +22,7 @@ License
     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
 Class
-    Foam::XiEqModel::SCOPEXiEq
+    Foam::XiEqModels::SCOPEXiEq
 
 Description
     Simple SCOPEXiEq model for XiEq based on SCOPEXiEqs correlation
@@ -120,7 +120,6 @@ public:
 
         //- Update properties from given dictionary
         virtual bool read(const dictionary& XiEqProperties);
-
 };
 
 

applications/solvers/combustion/chemFoam/readInitialConditions.H

@@ -87,7 +87,7 @@
     forAll(Y, i)
     {
         Y[i] = Y0[i];
-        h0 += Y0[i]*specieData[i].Hs(p[i], T0);
+        h0 += Y0[i]*specieData[i].Hs(p[0], T0);
     }
 
     thermo.he() = dimensionedScalar("h", dimEnergy/dimMass, h0);

applications/solvers/heatTransfer/buoyantBoussinesqPimpleFoam/Make/options

@@ -1,5 +1,8 @@
 EXE_INC = \
     -I../buoyantBoussinesqSimpleFoam \
+    -I$(LIB_SRC)/sampling/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/fvOptions/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/turbulenceModels \
     -I$(LIB_SRC)/turbulenceModels/incompressible/RAS/lnInclude \
@@ -9,6 +12,8 @@ EXE_INC = \
 
 EXE_LIBS = \
     -lfiniteVolume \
+    -lfvOptions \
+    -lsampling \
     -lmeshTools \
     -lincompressibleTurbulenceModel \
     -lincompressibleRASModels \

applications/solvers/heatTransfer/buoyantBoussinesqPimpleFoam/TEqn.H

@@ -11,12 +11,18 @@
       - fvm::laplacian(alphaEff, T)
      ==
         radiation->ST(rhoCpRef, T)
+      + fvOptions(T)
     );
 
     TEqn.relax();
+
+    fvOptions.constrain(TEqn);
+
     TEqn.solve();
 
     radiation->correct();
 
+    fvOptions.correct(T);
+
     rhok = 1.0 - beta*(T - TRef);
 }

applications/solvers/heatTransfer/buoyantBoussinesqPimpleFoam/UEqn.H

@@ -5,10 +5,14 @@
         fvm::ddt(U)
       + fvm::div(phi, U)
       + turbulence->divDevReff(U)
+     ==
+        fvOptions(U)
     );
 
     UEqn.relax();
 
+    fvOptions.constrain(UEqn);
+
     if (pimple.momentumPredictor())
     {
         solve
@@ -23,4 +27,6 @@
                 )*mesh.magSf()
             )
         );
+
+        fvOptions.correct(U);
     }

applications/solvers/heatTransfer/buoyantBoussinesqPimpleFoam/buoyantBoussinesqPimpleFoam.C

@@ -48,8 +48,9 @@ Description
 #include "fvCFD.H"
 #include "singlePhaseTransportModel.H"
 #include "RASModel.H"
-#include "pimpleControl.H"
 #include "radiationModel.H"
+#include "fvIOoptionList.H"
+#include "pimpleControl.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -61,6 +62,7 @@ int main(int argc, char *argv[])
     #include "readGravitationalAcceleration.H"
     #include "createFields.H"
     #include "createIncompressibleRadiationModel.H"
+    #include "createFvOptions.H"
     #include "initContinuityErrs.H"
     #include "readTimeControls.H"
     #include "CourantNo.H"

applications/solvers/heatTransfer/buoyantBoussinesqSimpleFoam/Make/options

@@ -1,5 +1,8 @@
 EXE_INC = \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/sampling/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/fvOptions/lnInclude \
     -I$(LIB_SRC)/turbulenceModels \
     -I$(LIB_SRC)/turbulenceModels/incompressible/RAS/lnInclude \
     -I$(LIB_SRC)/transportModels \
@@ -7,7 +10,9 @@ EXE_INC = \
 
 EXE_LIBS = \
     -lfiniteVolume \
+    -lsampling \
     -lmeshTools \
+    -lfvOptions \
     -lincompressibleTurbulenceModel \
     -lincompressibleRASModels \
     -lincompressibleTransportModels

applications/solvers/heatTransfer/buoyantBoussinesqSimpleFoam/TEqn.H

@@ -8,10 +8,17 @@
     (
         fvm::div(phi, T)
       - fvm::laplacian(alphaEff, T)
+     ==
+        fvOptions(T)
     );
 
     TEqn.relax();
+
+    fvOptions.constrain(TEqn);
+
     TEqn.solve();
 
+    fvOptions.correct(T);
+
     rhok = 1.0 - beta*(T - TRef);
 }

applications/solvers/heatTransfer/buoyantBoussinesqSimpleFoam/UEqn.H

@@ -4,10 +4,14 @@
     (
         fvm::div(phi, U)
       + turbulence->divDevReff(U)
+     ==
+        fvOptions(U)
     );
 
     UEqn().relax();
 
+    fvOptions.constrain(UEqn());
+
     if (simple.momentumPredictor())
     {
         solve
@@ -22,4 +26,6 @@
                 )*mesh.magSf()
             )
         );
+
+        fvOptions.correct(U);
     }

applications/solvers/heatTransfer/buoyantBoussinesqSimpleFoam/buoyantBoussinesqSimpleFoam.C

@@ -48,6 +48,7 @@ Description
 #include "fvCFD.H"
 #include "singlePhaseTransportModel.H"
 #include "RASModel.H"
+#include "fvIOoptionList.H"
 #include "simpleControl.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
@@ -59,6 +60,7 @@ int main(int argc, char *argv[])
     #include "createMesh.H"
     #include "readGravitationalAcceleration.H"
     #include "createFields.H"
+    #include "createFvOptions.H"
     #include "initContinuityErrs.H"
 
     simpleControl simple(mesh);

applications/solvers/heatTransfer/chtMultiRegionFoam/chtMultiRegionFoam.C

@@ -26,21 +26,18 @@ Application
 
 Description
     Combination of heatConductionFoam and buoyantFoam for conjugate heat
-    transfer between a solid region and fluid region. It includes
-    porous media in the primary fluid region treated explicitly.
+    transfer between solid regions and fluid regions. Both regions include
+    the fvOptions framework.
 
     It handles secondary fluid or solid circuits which can be coupled
     thermally with the main fluid region. i.e radiators, etc.
 
-    The secondary fluid region is
-
 \*---------------------------------------------------------------------------*/
 
 #include "fvCFD.H"
 #include "rhoThermo.H"
 #include "turbulenceModel.H"
 #include "fixedGradientFvPatchFields.H"
-#include "zeroGradientFvPatchFields.H"
 #include "regionProperties.H"
 #include "compressibleCourantNo.H"
 #include "solidRegionDiffNo.H"

applications/solvers/incompressible/pimpleFoam/pimpleFoam.C

@@ -30,7 +30,7 @@ Description
 
     Sub-models include:
     - turbulence modelling, i.e. laminar, RAS or LES
-    - run-time selectable finitie volume options, e.g. MRF, explicit porosity
+    - run-time selectable finite volume options, e.g. MRF, explicit porosity
 
 \*---------------------------------------------------------------------------*/
 

applications/solvers/incompressible/potentialFreeSurfaceFoam/resetPhiPatches.H

@@ -1,8 +0,0 @@
-FieldField<fvsPatchField, scalar>& phibf = phi.boundaryField();
-const FieldField<fvPatchField, vector>& Ubf = U.boundaryField();
-const FieldField<fvsPatchField, vector>& Sfbf = mesh.Sf().boundaryField();
-
-forAll(phibf, patchI)
-{
-    phibf[patchI] = (Ubf[patchI] & Sfbf[patchI]);
-}

applications/solvers/multiphase/potentialFreeSurfaceFoam/pEqn.H

@@ -1,5 +1,3 @@
-#include "resetPhiPatches.H"
-
 volScalarField rAU(1.0/UEqn().A());
 surfaceScalarField rAUf("Dp", fvc::interpolate(rAU));
 
@@ -22,6 +20,9 @@ adjustPhi(phiHbyA, U, p_gh);
 
 fvOptions.relativeFlux(phiHbyA);
 
+// Update the phi BCs from U before p BCs are updated
+phi.boundaryField() = mesh.Sf().boundaryField() & U.boundaryField();
+
 // Non-orthogonal pressure corrector loop
 while (pimple.correctNonOrthogonal())
 {

applications/test/GAMGAgglomeration/Test-GAMGAgglomeration.C

@@ -35,116 +35,6 @@ Description
 #include "meshTools.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-void checkConnectedAgglomeration
-(
-    const lduMesh& mesh,
-    const labelUList& restrict,
-    const label nCoarse
-)
-{
-    if (mesh.lduAddr().size() != restrict.size())
-    {
-        FatalErrorIn
-        (
-            "checkConnectedAgglomeration(const lduMesh&, const labelList&)"
-        )   << "nCells:" << mesh.lduAddr().size()
-            << " agglom:" << restrict.size()
-            << abort(FatalError);
-    }
-
-    // Seed (master) for every region
-    labelList regionToMaster(nCoarse, -1);
-    labelList master(mesh.lduAddr().size(), -1);
-    forAll(restrict, cellI)
-    {
-        label region = restrict[cellI];
-        if (regionToMaster[region] == -1)
-        {
-            // Set cell to be master for region
-            //Pout<< "For region " << region
-            //    << " allocating local master " << cellI
-            //    << endl;
-            regionToMaster[region] = cellI;
-            master[cellI] = cellI;
-        }
-    }
-
-    // Now loop and transport master through region
-    const labelUList& lower = mesh.lduAddr().lowerAddr();
-    const labelUList& upper = mesh.lduAddr().upperAddr();
-
-    while (true)
-    {
-        label nChanged = 0;
-
-        forAll(lower, faceI)
-        {
-            label own = lower[faceI];
-            label nei = upper[faceI];
-
-            if (restrict[own] == restrict[nei])
-            {
-                // Region-internal face
-
-                if (master[own] != -1)
-                {
-                    if (master[nei] == -1)
-                    {
-                        master[nei] = master[own];
-                        nChanged++;
-                    }
-                    else if (master[nei] != master[own])
-                    {
-                        FatalErrorIn("checkConnectedAgglomeration(..)")
-                            << "problem" << abort(FatalError);
-                    }
-                }
-                else if (master[nei] != -1)
-                {
-                    master[own] = master[nei];
-                    nChanged++;
-                }
-            }
-        }
-
-        reduce(nChanged, sumOp<label>());
-
-        if (nChanged == 0)
-        {
-            break;
-        }
-    }
-
-    // Check that master is set for all cells
-    boolList singleRegion(nCoarse, true);
-    label nSet = nCoarse;
-    forAll(master, cellI)
-    {
-        if (master[cellI] == -1)
-        {
-            label region = restrict[cellI];
-            if (singleRegion[region] == true)
-            {
-                singleRegion[region] = false;
-                nSet--;
-            }
-        }
-    }
-
-    label totalNCoarse = returnReduce(nCoarse, sumOp<label>());
-    label totalNVisited = returnReduce(nSet, sumOp<label>());
-
-    if (totalNVisited < totalNCoarse)
-    {
-        WarningIn("checkConnectedAgglomeration(..)")
-            << "out of " << totalNCoarse
-            << " agglomerated cells have " << totalNCoarse-totalNVisited
-            << " cells that are not a single connected region" << endl;
-    }
-}
-
-
 // Main program:
 
 int main(int argc, char *argv[])
@@ -227,12 +117,28 @@ int main(int argc, char *argv[])
             << "    agglomerated size : "
             << returnReduce(coarseSize, sumOp<label>()) << endl;
 
-        checkConnectedAgglomeration
+        labelList newAddr;
+        label newCoarseSize = 0;
+        bool ok = GAMGAgglomeration::checkRestriction
         (
-            agglom.meshLevel(level),
+            newAddr,
+            newCoarseSize,
+
+            agglom.meshLevel(level).lduAddr(),
             addr,
             coarseSize
         );
+        if (!ok)
+        {
+            WarningIn(args.executable())
+                << "At level " << level
+                << " there are " << coarseSize
+                << " agglomerated cells but " << newCoarseSize
+                << " disconnected regions" << endl
+                << "    This means that some agglomerations (coarse cells)"
+                << "    consist of multiple disconnected regions."
+                << endl;
+        }
 
 
         forAll(addr, fineI)

applications/test/Matrix/Test-Matrix.C

@@ -116,17 +116,19 @@ int main(int argc, char *argv[])
         squareMatrix[2][1] = -43;
         squareMatrix[2][2] = 98;
 
+        const scalarSquareMatrix squareMatrixCopy = squareMatrix;
         Info<< nl << "Square Matrix = " << squareMatrix << endl;
 
-        scalarDiagonalMatrix rhs(3, 0);
-        rhs[0] = 1;
-        rhs[1] = 2;
-        rhs[2] = 3;
+        Info<< "det = " << det(squareMatrixCopy) << endl;
 
-        LUsolve(squareMatrix, rhs);
+        labelList rhs(3, 0);
+        label sign;
+        LUDecompose(squareMatrix, rhs, sign);
 
         Info<< "Decomposition = " << squareMatrix << endl;
-        Info<< "Solution = " << rhs << endl;
+        Info<< "Pivots = " << rhs << endl;
+        Info<< "Sign = " << sign << endl;
+        Info<< "det = " << detDecomposed(squareMatrix, sign) << endl;
     }
 
     Info<< "\nEnd\n" << endl;

applications/utilities/mesh/generation/Allwmake

@@ -12,7 +12,7 @@ wmake snappyHexMesh
 if [ -d "$CGAL_ARCH_PATH" ]
 then
     foamyHexMesh/Allwmake
-    foamyHex2DMesh/Allwmake
+    foamyQuadMesh/Allwmake
 fi
 
 # ----------------------------------------------------------------- end-of-file

applications/utilities/mesh/generation/extrude/extrudeToRegionMesh/extrudeToRegionMesh.C

@@ -1783,7 +1783,7 @@ int main(int argc, char *argv[])
                 {
                     extrudeMeshShadowFaces[nShadowFaces] = fz[j];
                     zoneShadowFlipMap[nShadowFaces] = fz.flipMap()[j];
-                    zoneShadowID[nShadowFaces] = zoneShadowIDs[i];
+                    zoneShadowID[nShadowFaces] = i;
                     nShadowFaces++;
                 }
             }

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.C

@@ -26,6 +26,10 @@ License
 #include "DelaunayMesh.H"
 #include "labelPair.H"
 #include "PrintTable.H"
+#include "pointIOField.H"
+#include "scalarIOField.H"
+#include "labelIOField.H"
+#include "pointConversion.H"
 
 // * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
@@ -36,14 +40,121 @@ License
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
 template<class Triangulation>
-Foam::DelaunayMesh<Triangulation>::DelaunayMesh()
+Foam::DelaunayMesh<Triangulation>::DelaunayMesh(const Time& runTime)
 :
     Triangulation(),
     vertexCount_(0),
-    cellCount_(0)
+    cellCount_(0),
+    runTime_(runTime)
 {}
 
 
+template<class Triangulation>
+Foam::DelaunayMesh<Triangulation>::DelaunayMesh
+(
+    const Time& runTime,
+    const word& meshName
+)
+:
+    Triangulation(),
+    vertexCount_(0),
+    cellCount_(0),
+    runTime_(runTime)
+{
+    pointIOField pts
+    (
+        IOobject
+        (
+            "points",
+            runTime.timeName(),
+            meshName/polyMesh::meshSubDir,
+            runTime,
+            IOobject::READ_IF_PRESENT,
+            IOobject::NO_WRITE
+        )
+    );
+
+    labelIOField types
+    (
+        IOobject
+        (
+            "types",
+            runTime.timeName(),
+            meshName,
+            runTime,
+            IOobject::READ_IF_PRESENT,
+            IOobject::NO_WRITE
+        )
+    );
+
+    labelIOField indices
+    (
+        IOobject
+        (
+            "indices",
+            runTime.timeName(),
+            meshName,
+            runTime,
+            IOobject::READ_IF_PRESENT,
+            IOobject::NO_WRITE
+        )
+    );
+
+    labelIOField processorIndices
+    (
+        IOobject
+        (
+            "processorIndices",
+            runTime.timeName(),
+            meshName,
+            runTime,
+            IOobject::READ_IF_PRESENT,
+            IOobject::NO_WRITE
+        )
+    );
+
+    if (pts.headerOk())
+    {
+        forAll(pts, ptI)
+        {
+            Vertex_handle vh = this->insert(toPoint<Point>(pts[ptI]));
+
+            if (indices.headerOk())
+            {
+                vh->index() = indices[ptI];
+                vertexCount()++;
+            }
+            else
+            {
+                vh->index() = getNewVertexIndex();
+            }
+
+            if (processorIndices.headerOk())
+            {
+                vh->procIndex() = processorIndices[ptI];
+            }
+            else
+            {
+                vh->procIndex() = Pstream::myProcNo();
+            }
+
+            if (types.headerOk())
+            {
+                vh->type() =
+                    static_cast<Foam::indexedVertexEnum::vertexType>
+                    (
+                        types[ptI]
+                    );
+            }
+            else
+            {
+                vh->type() = Vb::vtUnassigned;
+            }
+        }
+    }
+}
+
+
 // * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
 
 template<class Triangulation>

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.H

@@ -43,6 +43,7 @@ SourceFiles
 #include "boundBox.H"
 #include "indexedVertex.H"
 #include "CGALTriangulation3Ddefs.H"
+#include "Time.H"
 #include "autoPtr.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
@@ -82,6 +83,12 @@ public:
            FixedList<label, 2>::Hash<>
         > labelPairHashSet;
 
+        typedef HashTable
+        <
+            label,
+            labelPair,
+            FixedList<label, 2>::Hash<>
+        > labelTolabelPairHashTable;
 
 private:
 
@@ -95,6 +102,9 @@ private:
         //  This allows a unique index to be assigned to each cell.
         mutable label cellCount_;
 
+        //- Reference to Time
+        const Time& runTime_;
+
         //- Spatial sort traits to use with a pair of point pointers and an int.
         //  Taken from a post on the CGAL lists: 2010-01/msg00004.html by
         //  Sebastien Loriot (Geometry Factory).
@@ -159,7 +169,13 @@ public:
     // Constructors
 
         //- Construct from components
-        DelaunayMesh();
+        explicit DelaunayMesh(const Time& runTime);
+
+        DelaunayMesh
+        (
+            const Time& runTime,
+            const word& meshName
+        );
 
 
     //- Destructor
@@ -168,6 +184,14 @@ public:
 
     // Member Functions
 
+        inline const Time& time() const;
+
+        inline void timeCheck
+        (
+            const string& description,
+            const bool check = true
+        ) const;
+
         inline label getNewVertexIndex() const;
 
         inline label getNewCellIndex() const;
@@ -177,6 +201,7 @@ public:
         inline void resetCellCount();
 
         inline label vertexCount() const;
+        inline label& vertexCount();
 
         inline void resetVertexCount();
 
@@ -209,12 +234,12 @@ public:
 
         //- Create an fvMesh from the triangulation.
         //  The mesh is not parallel consistent - only used for viewing
-        autoPtr<fvMesh> createMesh
+        autoPtr<polyMesh> createMesh
         (
             const fileName& name,
-            const Time& runTime,
-            labelList& vertexMap,
-            labelList& cellMap
+            labelTolabelPairHashTable& vertexMap,
+            labelList& cellMap,
+            const bool writeDelaunayData = true
         ) const;
 };
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMeshI.H

@@ -36,6 +36,40 @@ License
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
+template<class Triangulation>
+inline const Foam::Time& Foam::DelaunayMesh<Triangulation>::time() const
+{
+    return runTime_;
+}
+
+
+template<class Triangulation>
+void Foam::DelaunayMesh<Triangulation>::timeCheck
+(
+    const string& description,
+    const bool check
+) const
+{
+    if (check)
+    {
+        Info<< nl << "--- [ cpuTime "
+            << time().elapsedCpuTime() << " s, "
+            << "delta " << time().cpuTimeIncrement()<< " s";
+
+        if (description != word::null)
+        {
+            Info<< ", " << description << " ";
+        }
+        else
+        {
+            Info<< " ";
+        }
+
+        Info<< "] --- " << endl;
+    }
+}
+
+
 template<class Triangulation>
 inline Foam::label Foam::DelaunayMesh<Triangulation>::getNewVertexIndex() const
 {
@@ -90,6 +124,12 @@ Foam::label Foam::DelaunayMesh<Triangulation>::vertexCount() const
     return vertexCount_;
 }
 
+template<class Triangulation>
+Foam::label& Foam::DelaunayMesh<Triangulation>::vertexCount()
+{
+    return vertexCount_;
+}
+
 
 template<class Triangulation>
 void Foam::DelaunayMesh<Triangulation>::resetVertexCount()

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMeshIO.C

@@ -28,6 +28,7 @@ License
 #include "pointConversion.H"
 #include "wallPolyPatch.H"
 #include "processorPolyPatch.H"
+#include "labelIOField.H"
 
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
@@ -331,13 +332,13 @@ void Foam::DelaunayMesh<Triangulation>::printVertexInfo(Ostream& os) const
 
 
 template<class Triangulation>
-Foam::autoPtr<Foam::fvMesh>
+Foam::autoPtr<Foam::polyMesh>
 Foam::DelaunayMesh<Triangulation>::createMesh
 (
     const fileName& name,
-    const Time& runTime,
-    labelList& vertexMap,
-    labelList& cellMap
+    labelTolabelPairHashTable& vertexMap,
+    labelList& cellMap,
+    const bool writeDelaunayData
 ) const
 {
     pointField points(Triangulation::number_of_vertices());
@@ -354,12 +355,54 @@ Foam::DelaunayMesh<Triangulation>::createMesh
     List<DynamicList<face> > patchFaces(1, DynamicList<face>());
     List<DynamicList<label> > patchOwners(1, DynamicList<label>());
 
-    vertexMap.setSize(vertexCount(), -1);
+    vertexMap.resize(vertexCount());
     cellMap.setSize(Triangulation::number_of_finite_cells(), -1);
 
     // Calculate pts and a map of point index to location in pts.
     label vertI = 0;
 
+    labelIOField indices
+    (
+        IOobject
+        (
+            "indices",
+            time().timeName(),
+            name,
+            time(),
+            IOobject::NO_READ,
+            IOobject::AUTO_WRITE
+        ),
+        Triangulation::number_of_vertices()
+    );
+
+    labelIOField types
+    (
+        IOobject
+        (
+            "types",
+            time().timeName(),
+            name,
+            time(),
+            IOobject::NO_READ,
+            IOobject::AUTO_WRITE
+        ),
+        Triangulation::number_of_vertices()
+    );
+
+    labelIOField processorIndices
+    (
+        IOobject
+        (
+            "processorIndices",
+            time().timeName(),
+            name,
+            time(),
+            IOobject::NO_READ,
+            IOobject::AUTO_WRITE
+        ),
+        Triangulation::number_of_vertices()
+    );
+
     for
     (
         Finite_vertices_iterator vit = Triangulation::finite_vertices_begin();
@@ -369,13 +412,20 @@ Foam::DelaunayMesh<Triangulation>::createMesh
     {
         if (!vit->farPoint())
         {
-            vertexMap[vit->index()] = vertI;
+            vertexMap(labelPair(vit->index(), vit->procIndex())) = vertI;
             points[vertI] = topoint(vit->point());
+            indices[vertI] = vit->index();
+            types[vertI] = static_cast<label>(vit->type());
+            processorIndices[vertI] = vit->procIndex();
             vertI++;
         }
     }
 
     points.setSize(vertI);
+    indices.setSize(vertI);
+    types.setSize(vertI);
+    processorIndices.setSize(vertI);
+
 
     // Index the cells
     label cellI = 0;
@@ -391,6 +441,7 @@ Foam::DelaunayMesh<Triangulation>::createMesh
         (
             !cit->hasFarPoint()
          && !Triangulation::is_infinite(cit)
+         && cit->real()
         )
         {
             cellMap[cit->cellIndex()] = cellI++;
@@ -424,7 +475,12 @@ Foam::DelaunayMesh<Triangulation>::createMesh
 
         label c1I = Cb::ctFar;
         bool c1Real = false;
-        if (!c1->hasFarPoint() && !Triangulation::is_infinite(c1))
+        if
+        (
+            !c1->hasFarPoint()
+         && !Triangulation::is_infinite(c1)
+         && c1->real()
+        )
         {
             c1I = cellMap[c1->cellIndex()];
             c1Real = true;
@@ -432,7 +488,12 @@ Foam::DelaunayMesh<Triangulation>::createMesh
 
         label c2I = Cb::ctFar;
         bool c2Real = false;
-        if (!c2->hasFarPoint() && !Triangulation::is_infinite(c2))
+        if
+        (
+            !c2->hasFarPoint()
+         && !Triangulation::is_infinite(c2)
+         && c2->real()
+        )
         {
             c2I = cellMap[c2->cellIndex()];
             c2Real = true;
@@ -451,10 +512,17 @@ Foam::DelaunayMesh<Triangulation>::createMesh
         {
             verticesOnTriFace[i] = vertexMap
             [
+                labelPair
+                (
                     c1->vertex
                     (
                         Triangulation::vertex_triple_index(oppositeVertex, i)
-                )->index()
+                    )->index(),
+                    c1->vertex
+                    (
+                        Triangulation::vertex_triple_index(oppositeVertex, i)
+                    )->procIndex()
+                )
             ];
         }
 
@@ -524,15 +592,15 @@ Foam::DelaunayMesh<Triangulation>::createMesh
 
     Info<< "Creating mesh" << endl;
 
-    autoPtr<fvMesh> meshPtr
+    autoPtr<polyMesh> meshPtr
     (
-        new fvMesh
+        new polyMesh
         (
             IOobject
             (
                 name,
-                runTime.timeName(),
-                runTime,
+                time().timeName(),
+                time(),
                 IOobject::NO_READ,
                 IOobject::NO_WRITE
             ),
@@ -565,7 +633,14 @@ Foam::DelaunayMesh<Triangulation>::createMesh
 
     patches.setSize(nValidPatches);
 
-    meshPtr().addFvPatches(patches);
+    meshPtr().addPatches(patches);
+
+    if (writeDelaunayData)
+    {
+        indices.write();
+        types.write();
+        processorIndices.write();
+    }
 
     Info<< "Mesh created" << endl;
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.C

@@ -126,9 +126,24 @@ Foam::DistributedDelaunayMesh<Triangulation>::buildMap
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
 template<class Triangulation>
-Foam::DistributedDelaunayMesh<Triangulation>::DistributedDelaunayMesh()
+Foam::DistributedDelaunayMesh<Triangulation>::DistributedDelaunayMesh
+(
+    const Time& runTime
+)
 :
-    DelaunayMesh<Triangulation>(),
+    DelaunayMesh<Triangulation>(runTime),
+    allBackgroundMeshBounds_()
+{}
+
+
+template<class Triangulation>
+Foam::DistributedDelaunayMesh<Triangulation>::DistributedDelaunayMesh
+(
+    const Time& runTime,
+    const word& meshName
+)
+:
+    DelaunayMesh<Triangulation>(runTime, meshName),
     allBackgroundMeshBounds_()
 {}
 
@@ -254,6 +269,60 @@ void Foam::DistributedDelaunayMesh<Triangulation>::findProcessorBoundaryCells
        /Pstream::nProcs()
     );
 
+//    std::list<Cell_handle> infinite_cells;
+//    Triangulation::incident_cells
+//    (
+//        Triangulation::infinite_vertex(),
+//        std::back_inserter(infinite_cells)
+//    );
+//
+//    for
+//    (
+//        typename std::list<Cell_handle>::iterator vcit
+//            = infinite_cells.begin();
+//        vcit != infinite_cells.end();
+//        ++vcit
+//    )
+//    {
+//        Cell_handle cit = *vcit;
+//
+//        // Index of infinite vertex in this cell.
+//        int i = cit->index(Triangulation::infinite_vertex());
+//
+//        Cell_handle c = cit->neighbor(i);
+//
+//        if (c->unassigned())
+//        {
+//            c->cellIndex() = this->getNewCellIndex();
+//
+//            if (checkProcBoundaryCell(c, circumsphereOverlaps))
+//            {
+//                cellToCheck.insert(c->cellIndex());
+//            }
+//        }
+//    }
+//
+//
+//    for
+//    (
+//        Finite_cells_iterator cit = Triangulation::finite_cells_begin();
+//        cit != Triangulation::finite_cells_end();
+//        ++cit
+//    )
+//    {
+//        if (cit->parallelDualVertex())
+//        {
+//            if (cit->unassigned())
+//            {
+//                if (checkProcBoundaryCell(cit, circumsphereOverlaps))
+//                {
+//                    cellToCheck.insert(cit->cellIndex());
+//                }
+//            }
+//        }
+//    }
+
+
     for
     (
         All_cells_iterator cit = Triangulation::all_cells_begin();
@@ -315,13 +384,21 @@ void Foam::DistributedDelaunayMesh<Triangulation>::findProcessorBoundaryCells
                     continue;
                 }
 
+                if
+                (
                     checkProcBoundaryCell
                     (
                         citNeighbor,
                         circumsphereOverlaps
-                );
+                    )
+                )
+                {
+                    cellToCheck.insert(citNeighbor->cellIndex());
                 }
             }
+
+            cellToCheck.unset(cit->cellIndex());
+        }
     }
 }
 
@@ -521,7 +598,6 @@ Foam::label Foam::DistributedDelaunayMesh<Triangulation>::referVertices
                         << originalParallelVertices[vI].procIndex()
                         << " " << originalParallelVertices[vI].index() << endl;
                 }
-
             }
         }
     }

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.H

@@ -135,13 +135,25 @@ public:
     // Constructors
 
         //- Construct from components
-        DistributedDelaunayMesh();
+        explicit DistributedDelaunayMesh(const Time& runTime);
+
+        DistributedDelaunayMesh
+        (
+            const Time& runTime,
+            const word& meshName
+        );
 
 
     //- Destructor
     ~DistributedDelaunayMesh();
 
 
+    // Queries
+
+        //- Use DelaunayMesh timeCheck function
+        using DelaunayMesh<Triangulation>::timeCheck;
+
+
     // Member Functions
 
         //- Build a mapDistribute for the supplied destination processor data

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecomposition.C

@@ -791,10 +791,11 @@ Foam::backgroundMeshDecomposition::backgroundMeshDecomposition
     (
         IOobject
         (
-            fvMesh::defaultRegion,
+            "backgroundMeshDecomposition",
             runTime_.timeName(),
             runTime_,
-            IOobject::MUST_READ
+            IOobject::MUST_READ,
+            IOobject::AUTO_WRITE
         )
     ),
     meshCutter_

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMesh.C

@@ -27,7 +27,7 @@ License
 #include "cellSizeAndAlignmentControls.H"
 #include "pointIOField.H"
 #include "scalarIOField.H"
-#include "tensorIOField.H"
+#include "triadIOField.H"
 #include "tetrahedron.H"
 #include "plane.H"
 #include "transform.H"
@@ -38,6 +38,8 @@ License
 namespace Foam
 {
 defineTypeNameAndDebug(cellShapeControlMesh, 0);
+
+word cellShapeControlMesh::meshSubDir = "cellShapeControlMesh";
 }
 
 
@@ -366,9 +368,89 @@ void Foam::cellShapeControlMesh::writeTriangulation()
 
 Foam::cellShapeControlMesh::cellShapeControlMesh(const Time& runTime)
 :
+    DistributedDelaunayMesh<CellSizeDelaunay>
+    (
+        runTime,
+        meshSubDir
+    ),
     runTime_(runTime),
     defaultCellSize_(0.0)
-{}
+{
+    if (this->vertexCount())
+    {
+        fvMesh mesh
+        (
+            IOobject
+            (
+                meshSubDir,
+                runTime.timeName(),
+                runTime,
+                IOobject::READ_IF_PRESENT,
+                IOobject::NO_WRITE
+            )
+        );
+
+        if (mesh.nPoints() == this->vertexCount())
+        {
+            pointScalarField sizes
+            (
+                IOobject
+                (
+                    "sizes",
+                    runTime.timeName(),
+                    meshSubDir,
+                    runTime,
+                    IOobject::READ_IF_PRESENT,
+                    IOobject::NO_WRITE
+                ),
+                pointMesh::New(mesh)
+            );
+
+            triadIOField alignments
+            (
+                IOobject
+                (
+                    "alignments",
+                    mesh.time().timeName(),
+                    meshSubDir,
+                    mesh.time(),
+                    IOobject::READ_IF_PRESENT,
+                    IOobject::AUTO_WRITE
+                )
+            );
+
+            if
+            (
+                sizes.size() == this->vertexCount()
+             && alignments.size() == this->vertexCount()
+            )
+            {
+                label count = 0;
+                for
+                (
+                    Finite_vertices_iterator vit = finite_vertices_begin();
+                    vit != finite_vertices_end();
+                    ++vit
+                )
+                {
+                    vit->targetCellSize() = sizes[count];
+                    vit->alignment() = alignments[count];
+                    count++;
+                }
+            }
+            else
+            {
+                FatalErrorIn
+                (
+                    "Foam::cellShapeControlMesh::cellShapeControlMesh"
+                    "(const Time&)"
+                )   << "Cell size point field is not the same size as the "
+                    << "mesh."
+                    << abort(FatalError);
+            }
+        }
+    }
+}
 
 
 //Foam::triangulatedMesh::triangulatedMesh
@@ -744,9 +826,7 @@ void Foam::cellShapeControlMesh::insertBoundingPoints
 
 void Foam::cellShapeControlMesh::write() const
 {
-    Info<< "Writing cell size and alignment mesh" << endl;
-
-    const fileName name("cellSizeAndAlignmentMesh");
+    Info<< "Writing " << meshSubDir << endl;
 
     // Reindex the cells
     label cellCount = 0;
@@ -763,17 +843,16 @@ void Foam::cellShapeControlMesh::write() const
         }
     }
 
-    labelList vertexMap;
+    DelaunayMesh<CellSizeDelaunay>::labelTolabelPairHashTable vertexMap;
     labelList cellMap;
 
-    autoPtr<fvMesh> meshPtr = DelaunayMesh<CellSizeDelaunay>::createMesh
+    autoPtr<polyMesh> meshPtr = DelaunayMesh<CellSizeDelaunay>::createMesh
     (
-        name,
-        runTime_,
+        meshSubDir,
         vertexMap,
         cellMap
     );
-    const fvMesh& mesh = meshPtr();
+    const polyMesh& mesh = meshPtr();
 
     pointScalarField sizes
     (
@@ -781,7 +860,8 @@ void Foam::cellShapeControlMesh::write() const
         (
             "sizes",
             mesh.time().timeName(),
-            mesh,
+            meshSubDir,
+            mesh.time(),
             IOobject::NO_READ,
             IOobject::AUTO_WRITE
         ),
@@ -789,7 +869,22 @@ void Foam::cellShapeControlMesh::write() const
         scalar(0)
     );
 
-    OFstream str(runTime_.path()/"alignments.obj");
+    triadIOField alignments
+    (
+        IOobject
+        (
+            "alignments",
+            mesh.time().timeName(),
+            meshSubDir,
+            mesh.time(),
+            IOobject::NO_READ,
+            IOobject::AUTO_WRITE
+        ),
+        sizes.size()
+    );
+
+    // Write alignments
+//    OFstream str(runTime_.path()/"alignments.obj");
 
     for
     (
@@ -801,35 +896,41 @@ void Foam::cellShapeControlMesh::write() const
         if (!vit->farPoint())
         {
             // Populate sizes
-            sizes[vertexMap[vit->index()]] = vit->targetCellSize();
+            sizes[vertexMap[labelPair(vit->index(), vit->procIndex())]] =
+                vit->targetCellSize();
 
-            // Write alignments
-            const tensor& alignment = vit->alignment();
-            pointFromPoint pt = topoint(vit->point());
+            alignments[vertexMap[labelPair(vit->index(), vit->procIndex())]] =
+                vit->alignment();
 
-            if
-            (
-                alignment.x() == triad::unset[0]
-             || alignment.y() == triad::unset[0]
-             || alignment.z() == triad::unset[0]
-            )
-            {
-                Info<< "Bad alignment = " << vit->info();
-
-                vit->alignment() = tensor::I;
-
-                Info<< "New alignment = " << vit->info();
-
-                continue;
-            }
-
-            meshTools::writeOBJ(str, pt, alignment.x() + pt);
-            meshTools::writeOBJ(str, pt, alignment.y() + pt);
-            meshTools::writeOBJ(str, pt, alignment.z() + pt);
+//            // Write alignments
+//            const tensor& alignment = vit->alignment();
+//            pointFromPoint pt = topoint(vit->point());
+//
+//            if
+//            (
+//                alignment.x() == triad::unset[0]
+//             || alignment.y() == triad::unset[0]
+//             || alignment.z() == triad::unset[0]
+//            )
+//            {
+//                Info<< "Bad alignment = " << vit->info();
+//
+//                vit->alignment() = tensor::I;
+//
+//                Info<< "New alignment = " << vit->info();
+//
+//                continue;
+//            }
+//
+//            meshTools::writeOBJ(str, pt, alignment.x() + pt);
+//            meshTools::writeOBJ(str, pt, alignment.y() + pt);
+//            meshTools::writeOBJ(str, pt, alignment.z() + pt);
         }
     }
 
     mesh.write();
+    sizes.write();
+    alignments.write();
 }
 
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMesh.H

@@ -95,6 +95,9 @@ public:
     //- Runtime type information
     ClassName("cellShapeControlMesh");
 
+    //- Return the mesh sub-directory name (usually "cellShapeControlMesh")
+    static word meshSubDir;
+
 
     // Constructors
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/cellShapeControl/controlMeshRefinement/controlMeshRefinement.C

@@ -223,6 +223,13 @@ void Foam::controlMeshRefinement::initialMeshPopulation
     const autoPtr<backgroundMeshDecomposition>& decomposition
 )
 {
+    if (shapeController_.shapeControlMesh().vertexCount() > 0)
+    {
+        // Mesh already populated.
+        Info<< "Cell size and alignment mesh already populated." << endl;
+        return;
+    }
+
     autoPtr<boundBox> overallBoundBox;
 
     // Need to pass in the background mesh decomposition so that can test if
@@ -268,7 +275,7 @@ void Foam::controlMeshRefinement::initialMeshPopulation
 
         controlFunction.initialVertices(pts, sizes, alignments);
 
-        Info<< "    Got initial vertices list" << endl;
+        Info<< "    Got initial vertices list of size " << pts.size() << endl;
 
         List<Vb> vertices(pts.size());
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMesh.C

@@ -194,12 +194,24 @@ void Foam::conformalVoronoiMesh::insertPoints
         }
     }
 
+    label preReinsertionSize(number_of_vertices());
+
     rangeInsertWithInfo
     (
         vertices.begin(),
         vertices.end(),
-        true
+        false
     );
+
+    const label nReinserted = returnReduce
+    (
+        label(number_of_vertices()) - preReinsertionSize,
+        sumOp<label>()
+    );
+
+    Info<< "    Reinserted " << nReinserted << " vertices out of "
+        << returnReduce(vertices.size(), sumOp<label>())
+        << endl;
 }
 
 
@@ -787,8 +799,8 @@ Foam::face Foam::conformalVoronoiMesh::buildDualFace
                 << "Dual face uses circumcenter defined by a "
                 << "Delaunay tetrahedron with no internal "
                 << "or boundary points.  Defining Delaunay edge ends: "
-                << topoint(vA->point()) << " "
-                << topoint(vB->point()) << nl
+                << vA->info() << " "
+                << vB->info() << nl
                 << exit(FatalError);
         }
 
@@ -969,7 +981,7 @@ Foam::conformalVoronoiMesh::conformalVoronoiMesh
     const dictionary& foamyHexMeshDict
 )
 :
-    DistributedDelaunayMesh<Delaunay>(),
+    DistributedDelaunayMesh<Delaunay>(runTime),
     runTime_(runTime),
     rndGen_(64293*Pstream::myProcNo()),
     foamyHexMeshControls_(foamyHexMeshDict),
@@ -1034,6 +1046,18 @@ Foam::conformalVoronoiMesh::conformalVoronoiMesh
         )
     ),
     decomposition_()
+{}
+
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+Foam::conformalVoronoiMesh::~conformalVoronoiMesh()
+{}
+
+
+// * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * * //
+
+void Foam::conformalVoronoiMesh::initialiseForMotion()
 {
     if (foamyHexMeshControls().objOutput())
     {
@@ -1049,7 +1073,10 @@ Foam::conformalVoronoiMesh::conformalVoronoiMesh
                 runTime_,
                 rndGen_,
                 geometryToConformTo_,
-                foamyHexMeshDict.subDict("backgroundMeshDecomposition")
+                foamyHexMeshControls().foamyHexMeshDict().subDict
+                (
+                    "backgroundMeshDecomposition"
+                )
             )
         );
     }
@@ -1108,18 +1135,56 @@ Foam::conformalVoronoiMesh::conformalVoronoiMesh
             Foam::indexedVertexEnum::vtExternalFeaturePoint
         );
     }
-
-    //writeFixedPoints("fixedPointsStart.obj");
 }
 
 
-// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+void Foam::conformalVoronoiMesh::initialiseForConformation()
+{
+    if (Pstream::parRun())
+    {
+        decomposition_.reset
+        (
+            new backgroundMeshDecomposition
+            (
+                runTime_,
+                rndGen_,
+                geometryToConformTo_,
+                foamyHexMeshControls().foamyHexMeshDict().subDict
+                (
+                    "backgroundMeshDecomposition"
+                )
+            )
+        );
+    }
 
-Foam::conformalVoronoiMesh::~conformalVoronoiMesh()
-{}
+    insertInitialPoints();
 
+    insertFeaturePoints();
+
+    // Improve the guess that the backgroundMeshDecomposition makes with the
+    // initial positions.  Use before building the surface conformation to
+    // better balance the surface conformation load.
+    distributeBackground(*this);
+
+    buildSurfaceConformation();
+
+    // The introduction of the surface conformation may have distorted the
+    // balance of vertices, distribute if necessary.
+    distributeBackground(*this);
+
+    if (Pstream::parRun())
+    {
+        sync(decomposition_().procBounds());
+    }
+
+    cellSizeMeshOverlapsBackground();
+
+    if (foamyHexMeshControls().printVertexInfo())
+    {
+        printVertexInfo(Info);
+    }
+}
 
-// * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * * //
 
 void Foam::conformalVoronoiMesh::move()
 {
@@ -1630,6 +1695,8 @@ void Foam::conformalVoronoiMesh::move()
             );
         }
 
+        DynamicList<Vertex_handle> pointsToRemove;
+
         for
         (
             Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
@@ -1640,15 +1707,18 @@ void Foam::conformalVoronoiMesh::move()
             if
             (
                 (vit->internalPoint() || vit->internalBoundaryPoint())
-             && !vit->referred()
+             //&& !vit->referred()
             )
             {
-                bool inside = geometryToConformTo_.inside
-                (
-                    topoint(vit->point())
-                );
+                const Foam::point& pt = topoint(vit->point());
 
-                if (!inside)
+                bool inside = geometryToConformTo_.inside(pt);
+
+                if
+                (
+                    !inside
+                 || !geometryToConformTo_.globalBounds().contains(pt)
+                )
                 {
                     if
                     (
@@ -1658,13 +1728,16 @@ void Foam::conformalVoronoiMesh::move()
                     {
                         str().write(topoint(vit->point()));
                     }
-                    remove(vit);
+
+                    pointsToRemove.append(vit);
                     internalPtIsOutside++;
                 }
             }
         }
 
-        Info<< "    " << internalPtIsOutside
+        remove(pointsToRemove.begin(), pointsToRemove.end());
+
+        Info<< "    " << returnReduce(internalPtIsOutside, sumOp<label>())
             << " internal points were inserted outside the domain. "
             << "They have been removed." << endl;
     }
@@ -1739,32 +1812,6 @@ void Foam::conformalVoronoiMesh::move()
     if (time().outputTime())
     {
         writeMesh(time().timeName());
-
-//        label cellI = 0;
-//        for
-//        (
-//            Finite_cells_iterator cit = finite_cells_begin();
-//            cit != finite_cells_end();
-//            ++cit
-//        )
-//        {
-//            if
-//            (
-//                !cit->hasFarPoint()
-//             && !is_infinite(cit)
-//            )
-//            {
-//                cit->cellIndex() = cellI++;
-//            }
-//        }
-//
-//        labelList vertexMap;
-//        labelList cellMap;
-//        autoPtr<fvMesh> tetMesh =
-//            createMesh("tetMesh", runTime_, vertexMap, cellMap);
-//
-//        tetMesh().write();
-        //writeFixedPoints("fixedPointsStart_" + runTime_.timeName() + ".obj");
     }
 
     updateSizesAndAlignments(pointsToInsert);

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMesh.H

@@ -317,7 +317,7 @@ private:
         void insertPoints
         (
             List<Vb>& vertices,
-            bool distribute = true
+            bool distribute
         );
 
         //- Create a point-pair at a ppDist distance either side of
@@ -734,7 +734,8 @@ private:
         //- edge conformation location
         bool nearFeatureEdgeLocation
         (
-            pointIndexHit& pHit
+            const pointIndexHit& pHit,
+            pointIndexHit& nearestEdgeHit
         ) const;
 
         //- Build or rebuild the edge location tree
@@ -764,6 +765,7 @@ private:
             pointIndexHitAndFeatureDynList& featureEdgeHits,
             DynamicList<label>& surfaceToTreeShape,
             DynamicList<label>& edgeToTreeShape,
+            Map<scalar>& surfacePtToEdgePtDist,
             bool firstPass
         ) const;
 
@@ -1037,6 +1039,10 @@ public:
 
     // Member Functions
 
+        void initialiseForMotion();
+
+        void initialiseForConformation();
+
         //- Move the vertices according to the controller, re-conforming to the
         //  surface as required
         void move();

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshCalcDualMesh.C

@@ -1787,6 +1787,11 @@ void Foam::conformalVoronoiMesh::indexDualVertices
         }
     }
 
+    OBJstream snapping1("snapToSurface1.obj");
+    OBJstream snapping2("snapToSurface2.obj");
+    OFstream tetToSnapTo("tetsToSnapTo.obj");
+    label offset = 0;
+
     for
     (
         Delaunay::Finite_cells_iterator cit = finite_cells_begin();
@@ -1892,6 +1897,88 @@ void Foam::conformalVoronoiMesh::indexDualVertices
                 }
             }
 
+//            {
+//                // Snapping points far outside
+//                if (cit->boundaryDualVertex() && !cit->parallelDualVertex())
+//                {
+//                    pointFromPoint dual = cit->dual();
+//
+//                    pointIndexHit hitInfo;
+//                    label surfHit;
+//
+//                    // Find nearest surface point
+//                    geometryToConformTo_.findSurfaceNearest
+//                    (
+//                        dual,
+//                        sqr(targetCellSize(dual)),
+//                        hitInfo,
+//                        surfHit
+//                    );
+//
+//                    if (!hitInfo.hit())
+//                    {
+//                        // Project dual to nearest point on tet
+//
+//                        tetPointRef tet
+//                        (
+//                            topoint(cit->vertex(0)->point()),
+//                            topoint(cit->vertex(1)->point()),
+//                            topoint(cit->vertex(2)->point()),
+//                            topoint(cit->vertex(3)->point())
+//                        );
+//
+//                        pointFromPoint nearestPointOnTet =
+//                            tet.nearestPoint(dual).rawPoint();
+//
+//                        // Get nearest point on surface from tet.
+//                        geometryToConformTo_.findSurfaceNearest
+//                        (
+//                            nearestPointOnTet,
+//                            sqr(targetCellSize(nearestPointOnTet)),
+//                            hitInfo,
+//                            surfHit
+//                        );
+//
+//                        vector snapDir = nearestPointOnTet - dual;
+//                        snapDir /= mag(snapDir) + SMALL;
+//
+//                        drawDelaunayCell(tetToSnapTo, cit, offset);
+//                        offset += 1;
+//
+//                        vectorField norm(1);
+//                        allGeometry_[surfHit].getNormal
+//                        (
+//                            List<pointIndexHit>(1, hitInfo),
+//                            norm
+//                        );
+//                        norm[0] /= mag(norm[0]) + SMALL;
+//
+//                        if
+//                        (
+//                            hitInfo.hit()
+//                         && (mag(snapDir & norm[0]) > 0.5)
+//                        )
+//                        {
+//                            snapping1.write
+//                            (
+//                                linePointRef(dual, nearestPointOnTet)
+//                            );
+//
+//                            snapping2.write
+//                            (
+//                                linePointRef
+//                                (
+//                                    nearestPointOnTet,
+//                                    hitInfo.hitPoint()
+//                                )
+//                            );
+//
+//                            pts[cit->cellIndex()] = hitInfo.hitPoint();
+//                        }
+//                    }
+//                }
+//            }
+
             if (cit->boundaryDualVertex())
             {
                 if (cit->featureEdgeDualVertex())
@@ -2458,6 +2545,54 @@ void Foam::conformalVoronoiMesh::createFacesOwnerNeighbourAndPatches
          || (vB->internalOrBoundaryPoint() && !vB->referred())
         )
         {
+            if
+            (
+                (vA->internalPoint() && vB->externalBoundaryPoint())
+             || (vB->internalPoint() && vA->externalBoundaryPoint())
+            )
+            {
+                Cell_circulator ccStart = incident_cells(*eit);
+                Cell_circulator cc1 = ccStart;
+                Cell_circulator cc2 = cc1;
+
+                cc2++;
+
+                bool skipEdge = false;
+
+                do
+                {
+                    if
+                    (
+                        cc1->hasFarPoint() || cc2->hasFarPoint()
+                     || is_infinite(cc1) || is_infinite(cc2)
+                    )
+                    {
+                        Pout<< "Ignoring edge between internal and external: "
+                            << vA->info()
+                            << vB->info();
+
+                        skipEdge = true;
+                        break;
+                    }
+
+                    cc1++;
+                    cc2++;
+
+                } while (cc1 != ccStart);
+
+
+                // Do not create faces if the internal point is outside!
+                // This occurs because the internal point is not determined to
+                // be outside in the inside/outside test. This is most likely
+                // due to the triangle.nearestPointClassify test not returning
+                // edge/point as the nearest type.
+
+                if (skipEdge)
+                {
+                    continue;
+                }
+            }
+
             face newDualFace = buildDualFace(eit);
 
             if (newDualFace.size() >= 3)
@@ -2673,7 +2808,7 @@ void Foam::conformalVoronoiMesh::createFacesOwnerNeighbourAndPatches
         patchPointPairSlaves[patchI].transfer(patchPPSlaves[patchI]);
     }
 
-//    if (foamyHexMeshControls().objOutput())
+    if (foamyHexMeshControls().objOutput())
     {
         Info<< "Writing processor interfaces" << endl;
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshConformToSurface.C

@@ -298,6 +298,8 @@ void Foam::conformalVoronoiMesh::buildSurfaceConformation()
         DynamicList<label> edgeToTreeShape(AtoV/4);
         DynamicList<label> surfaceToTreeShape(AtoV);
 
+        Map<scalar> surfacePtToEdgePtDist(AtoV/4);
+
         for
         (
             Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
@@ -332,6 +334,7 @@ void Foam::conformalVoronoiMesh::buildSurfaceConformation()
                         featureEdgeHits,
                         surfaceToTreeShape,
                         edgeToTreeShape,
+                        surfacePtToEdgePtDist,
                         true
                     );
                 }
@@ -463,6 +466,8 @@ void Foam::conformalVoronoiMesh::buildSurfaceConformation()
         DynamicList<label> surfaceToTreeShape(AtoV/2);
         DynamicList<label> edgeToTreeShape(AtoV/4);
 
+        Map<scalar> surfacePtToEdgePtDist;
+
         for
         (
             Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
@@ -507,6 +512,7 @@ void Foam::conformalVoronoiMesh::buildSurfaceConformation()
                         featureEdgeHits,
                         surfaceToTreeShape,
                         edgeToTreeShape,
+                        surfacePtToEdgePtDist,
                         false
                     );
                 }
@@ -552,6 +558,7 @@ void Foam::conformalVoronoiMesh::buildSurfaceConformation()
                         featureEdgeHits,
                         surfaceToTreeShape,
                         edgeToTreeShape,
+                        surfacePtToEdgePtDist,
                         false
                     );
                 }
@@ -569,7 +576,20 @@ void Foam::conformalVoronoiMesh::buildSurfaceConformation()
             Vertex_handle vA = c->vertex(eit->second);
             Vertex_handle vB = c->vertex(eit->third);
 
-            if (vA->referred() || vB->referred())
+            if
+            (
+                vA->referred()
+             || vB->referred()
+            )
+            {
+                continue;
+            }
+
+            if
+            (
+                (vA->internalPoint() && vA->referred())
+             || (vB->internalPoint() && vB->referred())
+            )
             {
                 continue;
             }
@@ -617,6 +637,7 @@ void Foam::conformalVoronoiMesh::buildSurfaceConformation()
                         featureEdgeHits,
                         surfaceToTreeShape,
                         edgeToTreeShape,
+                        surfacePtToEdgePtDist,
                         false
                     );
                 }
@@ -1907,14 +1928,16 @@ bool Foam::conformalVoronoiMesh::pointIsNearSurfaceLocation
 
 bool Foam::conformalVoronoiMesh::nearFeatureEdgeLocation
 (
-    pointIndexHit& pHit
+    const pointIndexHit& pHit,
+    pointIndexHit& nearestEdgeHit
 ) const
 {
-    Foam::point pt = pHit.hitPoint();
+    const Foam::point& pt = pHit.hitPoint();
 
     const scalar exclusionRangeSqr = featureEdgeExclusionDistanceSqr(pt);
 
-    bool closeToFeatureEdge = pointIsNearFeatureEdgeLocation(pt);
+    bool closeToFeatureEdge =
+        pointIsNearFeatureEdgeLocation(pt, nearestEdgeHit);
 
     if (closeToFeatureEdge)
     {
@@ -1957,15 +1980,11 @@ bool Foam::conformalVoronoiMesh::nearFeatureEdgeLocation
             if
             (
                 mag(cosAngle) < searchConeAngle
-             && (
-                    mag(lineBetweenPoints)
-                  > foamyHexMeshControls().pointPairDistanceCoeff()
-                   *targetCellSize(pt)
-                )
+             && (mag(lineBetweenPoints) > pointPairDistance(pt))
             )
             {
-                pt = edgeHit.hitPoint();
-                pHit.setPoint(pt);
+                //pt = edgeHit.hitPoint();
+                //pHit.setPoint(pt);
                 closeToFeatureEdge = false;
             }
             else
@@ -2076,6 +2095,7 @@ void Foam::conformalVoronoiMesh::addSurfaceAndEdgeHits
     pointIndexHitAndFeatureDynList& featureEdgeHits,
     DynamicList<label>& surfaceToTreeShape,
     DynamicList<label>& edgeToTreeShape,
+    Map<scalar>& surfacePtToEdgePtDist,
     bool firstPass
 ) const
 {
@@ -2161,12 +2181,12 @@ void Foam::conformalVoronoiMesh::addSurfaceAndEdgeHits
 
                         if
                         (
-                            !pointIsNearFeatureEdgeLocation
-                            (
-                                edPt,
-                                nearestEdgeHit
-                            )
-//                            !nearFeatureEdgeLocation(edHit)
+//                            !pointIsNearFeatureEdgeLocation
+//                            (
+//                                edPt,
+//                                nearestEdgeHit
+//                            )
+                            !nearFeatureEdgeLocation(edHit, nearestEdgeHit)
                         )
                         {
                             appendToEdgeLocationTree(edPt);
@@ -2182,55 +2202,47 @@ void Foam::conformalVoronoiMesh::addSurfaceAndEdgeHits
                             (
                                 pointIndexHitAndFeature(edHit, featureHit)
                             );
+
+//                            Info<< "Add " << existingEdgeLocations_.size() - 1
+//                                << " " << magSqr(edPt - surfPt) << endl;
+
+                            surfacePtToEdgePtDist.insert
+                            (
+                                existingEdgeLocations_.size() - 1,
+                                magSqr(edPt - surfPt)
+                            );
+                        }
+                        else if (firstPass)
+                        {
+                            label hitIndex = nearestEdgeHit.index();
+
+//                            Info<< "Close to " << nearestEdgeHit << endl;
+
+                            if
+                            (
+                                magSqr(edPt - surfPt)
+                              < surfacePtToEdgePtDist[hitIndex]
+                            )
+                            {
+                                featureEdgeHits[hitIndex] =
+                                   pointIndexHitAndFeature(edHit, featureHit);
+
+                                existingEdgeLocations_[hitIndex] =
+                                    edHit.hitPoint();
+                                surfacePtToEdgePtDist[hitIndex] =
+                                    magSqr(edPt - surfPt);
+
+                                // Change edge location in featureEdgeHits
+                                // remove index from edge tree
+                                // reinsert new point into tree
+                                edgeLocationTreePtr_().remove(hitIndex);
+                                edgeLocationTreePtr_().insert
+                                (
+                                    hitIndex,
+                                    hitIndex + 1
+                                );
+                            }
                         }
-//                        else if (firstPass)
-//                        {
-//                            label hitIndex = nearestEdgeHit.index();
-//
-//                            // Calc new edge location
-////                            Foam::point newPt =
-////                                0.5
-////                               *(
-////                                    nearestEdgeHit.hitPoint()
-////                                  + edHit.hitPoint()
-////                                );
-//
-//                            pointIndexHit pHitOld =
-//                                edgeLocationTreePtr_().findNearest
-//                                (
-//                                    nearestEdgeHit.hitPoint(), GREAT
-//                                );
-//
-//                            pointIndexHit pHitNew =
-//                                edgeLocationTreePtr_().findNearest
-//                                (
-//                                    edHit.hitPoint(), GREAT
-//                                );
-//
-//                            if
-//                            (
-//                                pHitNew.hitPoint() - pHitOld.hitPoint()
-//                            )
-//                            {
-//                                edHit.setPoint(pHit.hitPoint());
-//
-//                                featureEdgeHits[hitIndex] =
-//                                   pointIndexHitAndFeature(edHit, featureHit);
-//
-//                                existingEdgeLocations_[hitIndex] =
-//                                    edHit.hitPoint();
-//
-//                                // Change edge location in featureEdgeHits
-//                                // remove index from edge tree
-//                                // reinsert new point into tree
-//                                edgeLocationTreePtr_().remove(hitIndex);
-//                                edgeLocationTreePtr_().insert
-//                                (
-//                                    hitIndex,
-//                                    hitIndex + 1
-//                                );
-//                            }
-//                        }
                     }
                 }
             }

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshFeaturePoints.C

@@ -873,17 +873,7 @@ void Foam::conformalVoronoiMesh::reinsertFeaturePoints(bool distribute)
 {
     Info<< nl << "Reinserting stored feature points" << endl;
 
-    label preReinsertionSize(number_of_vertices());
-
     insertPoints(featureVertices_, distribute);
-
-    const label nReinserted = returnReduce
-    (
-        label(number_of_vertices()) - preReinsertionSize,
-        sumOp<label>()
-    );
-
-    Info<< "    Reinserted " << nReinserted << " vertices" << endl;
 }
 
 
@@ -1458,8 +1448,6 @@ void Foam::conformalVoronoiMesh::createFeaturePoints(DynamicList<Vb>& pts)
 
     forAll(feMeshes, i)
     {
-        Info<< indent << "Edge mesh = " << feMeshes[i].name() << nl << endl;
-
         const extendedFeatureEdgeMesh& feMesh(feMeshes[i]);
 
         for

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshI.H

@@ -337,11 +337,10 @@ inline void Foam::conformalVoronoiMesh::createPointPair
     const Foam::point internalPt = surfPt - ppDistn;
     const Foam::point externalPt = surfPt + ppDistn;
 
-    if
-    (
-        geometryToConformTo_.inside(internalPt)
-     && geometryToConformTo_.outside(externalPt)
-    )
+    bool internalInside = geometryToConformTo_.inside(internalPt);
+    bool externalOutside = geometryToConformTo_.outside(externalPt);
+
+    if (internalInside && externalOutside)
     {
         pts.append
         (
@@ -369,11 +368,8 @@ inline void Foam::conformalVoronoiMesh::createPointPair
     {
         Info<< "Warning: point pair not inside/outside" << nl
             << "    surfPt = " << surfPt << nl
-            << "    internal = "
-            << internalPt << " " << geometryToConformTo_.inside(internalPt)
-            << nl
-            << "    external = "
-            << externalPt << " " << geometryToConformTo_.outside(externalPt)
+            << "    internal = " << internalPt << " " << internalInside << nl
+            << "    external = " << externalPt << " " << externalOutside
             << endl;
     }
 }

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshIO.C

@@ -101,7 +101,9 @@ void Foam::conformalVoronoiMesh::drawDelaunayCell
     // Supply offset as tet number
     offset *= 4;
 
-    os  << "# cell index: " << label(c->cellIndex()) << endl;
+    os  << "# cell index: " << label(c->cellIndex())
+        << " INT_MIN = " << INT_MIN
+        << endl;
 
     os  << "# circumradius "
         << mag(c->dual() - topoint(c->vertex(0)->point()))
@@ -112,7 +114,15 @@ void Foam::conformalVoronoiMesh::drawDelaunayCell
         os  << "# index / type / procIndex: "
             << label(c->vertex(i)->index()) << " "
             << label(c->vertex(i)->type()) << " "
-            << label(c->vertex(i)->procIndex()) << endl;
+            << label(c->vertex(i)->procIndex())
+            << (is_infinite(c->vertex(i)) ? " # This vertex is infinite!" : "")
+            <<
+                (
+                    c->vertex(i)->uninitialised()
+                  ? " # This vertex is uninitialised!"
+                  : ""
+                )
+            << endl;
 
         meshTools::writeOBJ(os, topoint(c->vertex(i)->point()));
     }
@@ -411,202 +421,247 @@ void Foam::conformalVoronoiMesh::writeMesh(const fileName& instance)
         }
     }
 
+    if (foamyHexMeshControls().writeCellShapeControlMesh())
+    {
+        cellShapeControls().shapeControlMesh().write();
+    }
+
+    if (foamyHexMeshControls().writeBackgroundMeshDecomposition())
+    {
+        Info<< nl << "Writing " << "backgroundMeshDecomposition" << endl;
+
+        // Have to explicitly update the mesh instance.
+        const_cast<fvMesh&>(decomposition_().mesh()).setInstance
+        (
+            time().timeName()
+        );
+
+        decomposition_().mesh().write();
+    }
+
     if (foamyHexMeshControls().writeTetDualMesh())
     {
-        // Determine map from Delaunay vertex to Dual mesh
-        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-        // From all Delaunay vertices to cell (positive index)
-        // or patch face (negative index)
-        labelList vertexToDualAddressing(number_of_vertices(), 0);
-
-        forAll(cellToDelaunayVertex, cellI)
-        {
-            label vertI = cellToDelaunayVertex[cellI];
-
-            if (vertexToDualAddressing[vertI] != 0)
-            {
-                FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
-                    << "Delaunay vertex " << vertI
-                    << " from cell " << cellI
-                    << " is already mapped to "
-                    << vertexToDualAddressing[vertI]
-                    << exit(FatalError);
-            }
-            vertexToDualAddressing[vertI] = cellI+1;
-        }
-
-        forAll(patchToDelaunayVertex, patchI)
-        {
-            const labelList& patchVertices = patchToDelaunayVertex[patchI];
-
-            forAll(patchVertices, i)
-            {
-                label vertI = patchVertices[i];
-
-                if (vertexToDualAddressing[vertI] > 0)
-                {
-                    FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
-                        << "Delaunay vertex " << vertI
-                        << " from patch " << patchI
-                        << " local index " << i
-                        << " is already mapped to cell "
-                        << vertexToDualAddressing[vertI]-1
-                        << exit(FatalError);
-                }
-
-                // Vertex might be used by multiple faces. Which one to
-                // use? For now last one wins.
-                label dualFaceI = dualPatchStarts[patchI]+i;
-                vertexToDualAddressing[vertI] = -dualFaceI-1;
-            }
-        }
-
-
-        // Calculate tet mesh addressing
-        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-        pointField points;
-        labelList boundaryPts(number_of_finite_cells(), -1);
-        // From tet point back to Delaunay vertex index
-        labelList pointToDelaunayVertex;
-        faceList faces;
-        labelList owner;
-        labelList neighbour;
-        wordList patchTypes;
-        wordList patchNames;
-        PtrList<dictionary> patchDicts;
-        pointField cellCentres;
-
-        calcTetMesh
+        label cellI = 0;
+        for
         (
-            points,
-            pointToDelaunayVertex,
-            faces,
-            owner,
-            neighbour,
-            patchTypes,
-            patchNames,
-            patchDicts
-        );
-
-
-
-        // Calculate map from tet points to dual mesh cells/patch faces
-        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-        labelIOList pointDualAddressing
-        (
-            IOobject
-            (
-                "pointDualAddressing",
-                instance,
-                "tetDualMesh"/polyMesh::meshSubDir,
-                runTime_,
-                IOobject::NO_READ,
-                IOobject::AUTO_WRITE,
-                false
-            ),
-            UIndirectList<label>
-            (
-                vertexToDualAddressing,
-                pointToDelaunayVertex
-            )()
-        );
-
-        label pointI = findIndex(pointDualAddressing, -1);
-        if (pointI != -1)
-        {
-            WarningIn
-            (
-                "conformalVoronoiMesh::writeMesh\n"
-                "(\n"
-                "    const fileName& instance,\n"
-                "    bool filterFaces\n"
-                ")\n"
-            )   << "Delaunay vertex " << pointI
-                << " does not have a corresponding dual cell." << endl;
-        }
-
-        Info<< "Writing map from tetDualMesh points to Voronoi mesh to "
-            << pointDualAddressing.objectPath() << endl;
-        pointDualAddressing.write();
-
-
-
-        // Write tet points corresponding to the Voronoi cell/face centre
-        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-        {
-            // Read Voronoi mesh
-            fvMesh mesh
-            (
-                IOobject
-                (
-                    Foam::polyMesh::defaultRegion,
-                    instance,
-                    runTime_,
-                    IOobject::MUST_READ
+            Finite_cells_iterator cit = finite_cells_begin();
+            cit != finite_cells_end();
+            ++cit
         )
-            );
-            pointIOField dualPoints
+        {
+            if
             (
-                IOobject
-                (
-                    "dualPoints",
-                    instance,
-                    "tetDualMesh"/polyMesh::meshSubDir,
-                    runTime_,
-                    IOobject::NO_READ,
-                    IOobject::AUTO_WRITE,
-                    false
-                ),
-                points
-            );
-
-            forAll(pointDualAddressing, pointI)
+                !cit->hasFarPoint()
+             && !is_infinite(cit)
+            )
             {
-                label index = pointDualAddressing[pointI];
-
-                if (index > 0)
-                {
-                    label cellI = index-1;
-                    dualPoints[pointI] = mesh.cellCentres()[cellI];
-                }
-                else if (index < 0)
-                {
-                    label faceI = -index-1;
-                    if (faceI >= mesh.nInternalFaces())
-                    {
-                        dualPoints[pointI] = mesh.faceCentres()[faceI];
-                    }
+                cit->cellIndex() = cellI++;
             }
         }
 
-            Info<< "Writing new tetDualMesh points mapped onto Voronoi mesh to "
-                << dualPoints.objectPath() << endl
-                << "Replace the polyMesh/points with these." << endl;
-            dualPoints.write();
-        }
+        Info<< nl << "Writing " << "tetDualMesh" << endl;
 
+        DistributedDelaunayMesh<Delaunay>::labelTolabelPairHashTable vertexMap;
+        labelList cellMap;
+        autoPtr<polyMesh> tetMesh =
+            createMesh("tetDualMesh", vertexMap, cellMap);
 
-        Info<< nl << "Writing tetDualMesh to " << instance << endl;
+        tetMesh().write();
 
-        PackedBoolList boundaryFacesToRemove;
-        writeMesh
-        (
-            "tetDualMesh",
-            instance,
-            points,
-            boundaryPts,
-            faces,
-            owner,
-            neighbour,
-            patchTypes,
-            patchNames,
-            patchDicts,
-            cellCentres,
-            boundaryFacesToRemove
-        );
+//        // Determine map from Delaunay vertex to Dual mesh
+//        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+//
+//        // From all Delaunay vertices to cell (positive index)
+//        // or patch face (negative index)
+//        labelList vertexToDualAddressing(number_of_vertices(), 0);
+//
+//        forAll(cellToDelaunayVertex, cellI)
+//        {
+//            label vertI = cellToDelaunayVertex[cellI];
+//
+//            if (vertexToDualAddressing[vertI] != 0)
+//            {
+//                FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
+//                    << "Delaunay vertex " << vertI
+//                    << " from cell " << cellI
+//                    << " is already mapped to "
+//                    << vertexToDualAddressing[vertI]
+//                    << exit(FatalError);
+//            }
+//            vertexToDualAddressing[vertI] = cellI+1;
+//        }
+//
+//        forAll(patchToDelaunayVertex, patchI)
+//        {
+//            const labelList& patchVertices = patchToDelaunayVertex[patchI];
+//
+//            forAll(patchVertices, i)
+//            {
+//                label vertI = patchVertices[i];
+//
+//                if (vertexToDualAddressing[vertI] > 0)
+//                {
+//                    FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
+//                        << "Delaunay vertex " << vertI
+//                        << " from patch " << patchI
+//                        << " local index " << i
+//                        << " is already mapped to cell "
+//                        << vertexToDualAddressing[vertI]-1
+//                        << exit(FatalError);
+//                }
+//
+//                // Vertex might be used by multiple faces. Which one to
+//                // use? For now last one wins.
+//                label dualFaceI = dualPatchStarts[patchI]+i;
+//                vertexToDualAddressing[vertI] = -dualFaceI-1;
+//            }
+//        }
+//
+//
+//        // Calculate tet mesh addressing
+//        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+//
+//        pointField points;
+//        labelList boundaryPts(number_of_finite_cells(), -1);
+//        // From tet point back to Delaunay vertex index
+//        labelList pointToDelaunayVertex;
+//        faceList faces;
+//        labelList owner;
+//        labelList neighbour;
+//        wordList patchTypes;
+//        wordList patchNames;
+//        PtrList<dictionary> patchDicts;
+//        pointField cellCentres;
+//
+//        calcTetMesh
+//        (
+//            points,
+//            pointToDelaunayVertex,
+//            faces,
+//            owner,
+//            neighbour,
+//            patchTypes,
+//            patchNames,
+//            patchDicts
+//        );
+//
+//
+//
+//        // Calculate map from tet points to dual mesh cells/patch faces
+//        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+//
+//        labelIOList pointDualAddressing
+//        (
+//            IOobject
+//            (
+//                "pointDualAddressing",
+//                instance,
+//                "tetDualMesh"/polyMesh::meshSubDir,
+//                runTime_,
+//                IOobject::NO_READ,
+//                IOobject::AUTO_WRITE,
+//                false
+//            ),
+//            UIndirectList<label>
+//            (
+//                vertexToDualAddressing,
+//                pointToDelaunayVertex
+//            )()
+//        );
+//
+//        label pointI = findIndex(pointDualAddressing, -1);
+//        if (pointI != -1)
+//        {
+//            WarningIn
+//            (
+//                "conformalVoronoiMesh::writeMesh\n"
+//                "(\n"
+//                "    const fileName& instance,\n"
+//                "    bool filterFaces\n"
+//                ")\n"
+//            )   << "Delaunay vertex " << pointI
+//                << " does not have a corresponding dual cell." << endl;
+//        }
+//
+//        Info<< "Writing map from tetDualMesh points to Voronoi mesh to "
+//            << pointDualAddressing.objectPath() << endl;
+//        pointDualAddressing.write();
+//
+//
+//
+//        // Write tet points corresponding to the Voronoi cell/face centre
+//        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+//        {
+//            // Read Voronoi mesh
+//            fvMesh mesh
+//            (
+//                IOobject
+//                (
+//                    Foam::polyMesh::defaultRegion,
+//                    instance,
+//                    runTime_,
+//                    IOobject::MUST_READ
+//                )
+//            );
+//            pointIOField dualPoints
+//            (
+//                IOobject
+//                (
+//                    "dualPoints",
+//                    instance,
+//                    "tetDualMesh"/polyMesh::meshSubDir,
+//                    runTime_,
+//                    IOobject::NO_READ,
+//                    IOobject::AUTO_WRITE,
+//                    false
+//                ),
+//                points
+//            );
+//
+//            forAll(pointDualAddressing, pointI)
+//            {
+//                label index = pointDualAddressing[pointI];
+//
+//                if (index > 0)
+//                {
+//                    label cellI = index-1;
+//                    dualPoints[pointI] = mesh.cellCentres()[cellI];
+//                }
+//                else if (index < 0)
+//                {
+//                    label faceI = -index-1;
+//                    if (faceI >= mesh.nInternalFaces())
+//                    {
+//                        dualPoints[pointI] = mesh.faceCentres()[faceI];
+//                    }
+//                }
+//            }
+//
+//            Info<< "Writing tetDualMesh points mapped onto Voronoi mesh to "
+//                << dualPoints.objectPath() << endl
+//                << "Replace the polyMesh/points with these." << endl;
+//            dualPoints.write();
+//        }
+//
+//
+//        Info<< nl << "Writing tetDualMesh to " << instance << endl;
+//
+//        PackedBoolList boundaryFacesToRemove;
+//        writeMesh
+//        (
+//            "tetDualMesh",
+//            instance,
+//            points,
+//            boundaryPts,
+//            faces,
+//            owner,
+//            neighbour,
+//            patchTypes,
+//            patchNames,
+//            patchDicts,
+//            cellCentres,
+//            boundaryFacesToRemove
+//        );
     }
 }
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.C

@@ -113,13 +113,12 @@ Foam::Ostream& Foam::operator<<
     const CGAL::indexedVertex<Gt, Vb>& p
 )
 {
-    os  << p.point()
-        << p.index()
-        << static_cast<int>(p.type())
-        << p.procIndex()
-        << p.alignment()
-        << p.targetCellSize()
-        << token::SPACE
+    os  << p.point() << ' '
+        << p.index() << ' '
+        << static_cast<int>(p.type()) << ' '
+        << p.procIndex() << ' '
+        << p.alignment() << ' '
+        << p.targetCellSize() << ' '
         << static_cast<int>(p.fixed());
 
     return os;

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfaces.C

@@ -706,8 +706,8 @@ Foam::Field<bool> Foam::conformationSurfaces::wellInside
 //            Info<< surface.name() << " = "
 //                << volumeType::names[surfaceVolumeTests[s][i]] << endl;
 
-            //if (surfaceVolumeTests[s][i] == volumeType::OUTSIDE)
-            if (surfaceVolumeTests[s][i] != volumeType::INSIDE)
+            if (surfaceVolumeTests[s][i] == volumeType::OUTSIDE)
+//            if (surfaceVolumeTests[s][i] != volumeType::INSIDE)
             {
                 insidePoint[i] = false;
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/cvControls/cvControls.C

@@ -247,6 +247,20 @@ Foam::cvControls::cvControls
     }
 
     writeTetDualMesh_ = Switch(filteringDict.lookup("writeTetDualMesh"));
+
+    writeCellShapeControlMesh_ =
+        Switch(filteringDict.lookup("writeCellShapeControlMesh"));
+
+    if (Pstream::parRun())
+    {
+        writeBackgroundMeshDecomposition_ =
+            Switch(filteringDict.lookup("writeBackgroundMeshDecomposition"));
+    }
+    else
+    {
+        writeBackgroundMeshDecomposition_ = Switch(false);
+    }
+
 }
 
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/cvControls/cvControls.H

@@ -202,6 +202,10 @@ class cvControls
         //- Write tet mesh at output time (it always writes the Voronoi)
         Switch writeTetDualMesh_;
 
+        Switch writeCellShapeControlMesh_;
+
+        Switch writeBackgroundMeshDecomposition_;
+
 
     // Private Member Functions
 
@@ -335,6 +339,12 @@ public:
 
             //- Write tetMesh at output time
             inline Switch writeTetDualMesh() const;
+
+            //- Write cellShapeControlMesh at output time
+            inline Switch writeCellShapeControlMesh() const;
+
+            //- Write backgroundMeshDecomposition at output time
+            inline Switch writeBackgroundMeshDecomposition() const;
 };
 
 

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/cvControls/cvControlsI.H

@@ -215,5 +215,15 @@ inline Foam::Switch Foam::cvControls::writeTetDualMesh() const
     return writeTetDualMesh_;
 }
 
+inline Foam::Switch Foam::cvControls::writeCellShapeControlMesh() const
+{
+    return writeCellShapeControlMesh_;
+}
+
+inline Foam::Switch Foam::cvControls::writeBackgroundMeshDecomposition() const
+{
+    return writeBackgroundMeshDecomposition_;
+}
+
 
 // ************************************************************************* //

applications/utilities/mesh/generation/foamyHexMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C

@@ -58,7 +58,7 @@ List<Vb::Point> pointFile::initialPoints() const
         IOobject
         (
             pointFileName_.name(),
-            foamyHexMesh_.time().constant(),
+            foamyHexMesh_.time().timeName(),
             foamyHexMesh_.time(),
             IOobject::MUST_READ,
             IOobject::NO_WRITE

applications/utilities/mesh/generation/foamyHexMesh/foamyHexMesh.C

@@ -45,18 +45,28 @@ int main(int argc, char *argv[])
         "check all surface geometry for quality"
     );
 
+    Foam::argList::addBoolOption
+    (
+        "conformationOnly",
+        "conform to the initial points without any point motion"
+    );
+
+    #include "addOverwriteOption.H"
+
     #include "setRootCase.H"
     #include "createTime.H"
 
     runTime.functionObjects().off();
 
     const bool checkGeometry = args.optionFound("checkGeometry");
+    const bool conformationOnly = args.optionFound("conformationOnly");
+    const bool overwrite = args.optionFound("overwrite");
 
     IOdictionary foamyHexMeshDict
     (
         IOobject
         (
-            "foamyHexMeshDict",
+            args.executable() + "Dict",
             runTime.system(),
             runTime,
             IOobject::MUST_READ_IF_MODIFIED,
@@ -101,9 +111,26 @@ int main(int argc, char *argv[])
 
     conformalVoronoiMesh::debug = true;
 
+    Info<< "Create mesh for time = " << runTime.timeName() << nl << endl;
+
     conformalVoronoiMesh mesh(runTime, foamyHexMeshDict);
 
 
+    if (conformationOnly)
+    {
+        mesh.initialiseForConformation();
+
+        if (!overwrite)
+        {
+            runTime++;
+        }
+
+        mesh.writeMesh(runTime.timeName());
+    }
+    else
+    {
+        mesh.initialiseForMotion();
+
         while (runTime.loop())
         {
             Info<< nl << "Time = " << runTime.timeName() << endl;
@@ -114,6 +141,8 @@ int main(int argc, char *argv[])
                 << "  ClockTime = " << runTime.elapsedClockTime() << " s"
                 << endl;
         }
+    }
+
 
     Info<< nl << "End" << nl << endl;
 

applications/utilities/mesh/generation/foamyQuadMesh/Make/files

@@ -7,6 +7,6 @@ insertSurfaceNearPointPairs.C
 insertBoundaryConformPointPairs.C
 CV2DIO.C
 shortEdgeFilter2D.C
-foamyHex2DMesh.C
+foamyQuadMesh.C
 
-EXE = $(FOAM_APPBIN)/foamyHex2DMesh
+EXE = $(FOAM_APPBIN)/foamyQuadMesh

applications/utilities/mesh/generation/foamyQuadMesh/foamyQuadMesh.C

@@ -22,7 +22,7 @@ License
     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
 Application
-    foamyHex2DMesh
+    foamyQuadMesh
 
 Description
     Conformal-Voronoi 2D extruding automatic mesher with grid or read

applications/utilities/mesh/generation/foamyQuadMesh/foamyQuadMeshDict

@@ -11,31 +11,18 @@ FoamFile
     format          ascii;
     class           dictionary;
     location        "system";
-    object          foamyHex2DMeshDict;
+    object          foamyQuadMeshDict;
 }
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 
 geometry
 {
-    laurence_clean_preciser.stl
+    surfaceFile.stl
     {
-        name laurence_clean_preciser;
-        type closedTriSurfaceMesh;
-        //type triSurfaceMesh;
+        name surfaceFile;
+        type triSurfaceMesh;
     }
-//    refinementBox
-//    {
-//        type searchableBox;
-//        min (-0.5 0.35 -1000);
-//        max (-0.5 0.35 1000);
-//    }
-//    refinementSphere
-//    {
-//        type searchableSphere;
-//        centre (0.85 0.4 0.0);
-//        radius 0.01;
-//    }
 }
 
 surfaceConformation
@@ -66,10 +53,10 @@ surfaceConformation
 
     geometryToConformTo
     {
-        laurence_clean_preciser
+        surfaceFile
         {
             featureMethod           extendedFeatureEdgeMesh;
-            extendedFeatureEdgeMesh "laurence_clean_preciser.extendedFeatureEdgeMesh";
+            extendedFeatureEdgeMesh "surfaceFile.extendedFeatureEdgeMesh";
         }
     }
 
@@ -94,7 +81,7 @@ motionControl
 
     cellSizeControlGeometry
     {
-        laurence_clean_preciser
+        surfaceFile
         {
             priority              1;
             mode                  bothSides;

applications/utilities/parallelProcessing/decomposePar/decomposePar.C

@@ -55,6 +55,9 @@ Usage
     \param -fields \n
     Use existing geometry decomposition and convert fields only.
 
+    \param -sets \n
+    Decompose cellSets, faceSets, pointSets.
+
     \param -force \n
     Remove any existing \a processor subdirectories before decomposing the
     geometry.
@@ -127,6 +130,11 @@ int main(int argc, char *argv[])
         "use existing geometry decomposition and convert fields only"
     );
     argList::addBoolOption
+    (
+        "sets",
+        "decompose cellSets, faceSets, pointSets"
+    );
+    argList::addBoolOption
     (
         "force",
         "remove existing processor*/ subdirs before decomposing the geometry"
@@ -146,6 +154,7 @@ int main(int argc, char *argv[])
     bool writeCellDist           = args.optionFound("cellDist");
     bool copyUniform             = args.optionFound("copyUniform");
     bool decomposeFieldsOnly     = args.optionFound("fields");
+    bool decomposeSets           = args.optionFound("sets");
     bool forceOverwrite          = args.optionFound("force");
     bool ifRequiredDecomposition = args.optionFound("ifRequired");
 
@@ -312,7 +321,7 @@ int main(int argc, char *argv[])
         {
             mesh.decomposeMesh();
 
-            mesh.writeDecomposition();
+            mesh.writeDecomposition(decomposeSets);
 
             if (writeCellDist)
             {

applications/utilities/parallelProcessing/decomposePar/domainDecomposition.C

@@ -34,6 +34,10 @@ License
 #include "globalMeshData.H"
 #include "DynamicList.H"
 #include "fvFieldDecomposer.H"
+#include "IOobjectList.H"
+#include "cellSet.H"
+#include "faceSet.H"
+#include "pointSet.H"
 
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
@@ -123,7 +127,7 @@ Foam::domainDecomposition::~domainDecomposition()
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-bool Foam::domainDecomposition::writeDecomposition()
+bool Foam::domainDecomposition::writeDecomposition(const bool decomposeSets)
 {
     Info<< "\nConstructing processor meshes" << endl;
 
@@ -160,6 +164,37 @@ bool Foam::domainDecomposition::writeDecomposition()
     }
 
 
+    PtrList<const cellSet> cellSets;
+    PtrList<const faceSet> faceSets;
+    PtrList<const pointSet> pointSets;
+    if (decomposeSets)
+    {
+        // Read sets
+        IOobjectList objects(*this, facesInstance(), "polyMesh/sets");
+        {
+            IOobjectList cSets(objects.lookupClass(cellSet::typeName));
+            forAllConstIter(IOobjectList, cSets, iter)
+            {
+                cellSets.append(new cellSet(*iter()));
+            }
+        }
+        {
+            IOobjectList fSets(objects.lookupClass(faceSet::typeName));
+            forAllConstIter(IOobjectList, fSets, iter)
+            {
+                faceSets.append(new faceSet(*iter()));
+            }
+        }
+        {
+            IOobjectList pSets(objects.lookupClass(pointSet::typeName));
+            forAllConstIter(IOobjectList, pSets, iter)
+            {
+                pointSets.append(new pointSet(*iter()));
+            }
+        }
+    }
+
+
     label maxProcCells = 0;
     label totProcFaces = 0;
     label maxProcPatches = 0;
@@ -732,6 +767,52 @@ bool Foam::domainDecomposition::writeDecomposition()
 
         procMesh.write();
 
+
+
+        if (decomposeSets)
+        {
+            forAll(cellSets, i)
+            {
+                const cellSet& cs = cellSets[i];
+                cellSet set(procMesh, cs.name(), cs.size()/nProcs_);
+                forAll(curCellLabels, i)
+                {
+                    if (cs.found(curCellLabels[i]))
+                    {
+                        set.insert(i);
+                    }
+                }
+                set.write();
+            }
+            forAll(faceSets, i)
+            {
+                const faceSet& cs = faceSets[i];
+                faceSet set(procMesh, cs.name(), cs.size()/nProcs_);
+                forAll(curFaceLabels, i)
+                {
+                    if (cs.found(mag(curFaceLabels[i])-1))
+                    {
+                        set.insert(i);
+                    }
+                }
+                set.write();
+            }
+            forAll(pointSets, i)
+            {
+                const pointSet& cs = pointSets[i];
+                pointSet set(procMesh, cs.name(), cs.size()/nProcs_);
+                forAll(curPointLabels, i)
+                {
+                    if (cs.found(curPointLabels[i]))
+                    {
+                        set.insert(i);
+                    }
+                }
+                set.write();
+            }
+        }
+
+
         // Write points if pointsInstance differing from facesInstance
         if (facesInstancePointsPtr_.valid())
         {

applications/utilities/parallelProcessing/decomposePar/domainDecomposition.H

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2013 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -172,7 +172,7 @@ public:
         void decomposeMesh();
 
         //- Write decomposition
-        bool writeDecomposition();
+        bool writeDecomposition(const bool decomposeSets);
 
         //- Cell-processor decomposition labels
         const labelList& cellToProc() const

applications/utilities/parallelProcessing/reconstructPar/Make/options

@@ -1,6 +1,7 @@
 EXE_INC = \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/lagrangian/basic/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
     -I$(LIB_SRC)/parallel/reconstruct/reconstruct/lnInclude \
     -I$(LIB_SRC)/regionModels/regionModel/lnInclude
 

applications/utilities/parallelProcessing/reconstructPar/reconstructPar.C

@@ -41,6 +41,10 @@ Description
 #include "pointFieldReconstructor.H"
 #include "reconstructLagrangian.H"
 
+#include "cellSet.H"
+#include "faceSet.H"
+#include "pointSet.H"
+
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 bool haveAllTimes
@@ -99,6 +103,11 @@ int main(int argc, char *argv[])
         "skip reconstructing lagrangian positions and fields"
     );
     argList::addBoolOption
+    (
+        "sets",
+        "reconstruct cellSets, faceSets, pointSets"
+    );
+    argList::addBoolOption
     (
         "newTimes",
         "only reconstruct new times (i.e. that do not exist already)"
@@ -113,6 +122,9 @@ int main(int argc, char *argv[])
         args.optionLookup("fields")() >> selectedFields;
     }
 
+    const bool reconstructSets = args.optionFound("sets");
+
+
     const bool noLagrangian = args.optionFound("noLagrangian");
 
     HashSet<word> selectedLagrangianFields;
@@ -668,6 +680,148 @@ int main(int argc, char *argv[])
                     Info<< "No lagrangian fields" << nl << endl;
                 }
             }
+
+
+            if (reconstructSets)
+            {
+                // Scan to find all sets
+                HashTable<label> cSetNames;
+                HashTable<label> fSetNames;
+                HashTable<label> pSetNames;
+
+                forAll(procMeshes.meshes(), procI)
+                {
+                    const fvMesh& procMesh = procMeshes.meshes()[procI];
+
+                    IOobjectList objects
+                    (
+                        procMesh, procMesh.facesInstance(), "polyMesh/sets"
+                    );
+                    IOobjectList cSets(objects.lookupClass(cellSet::typeName));
+                    forAllConstIter(IOobjectList, cSets, iter)
+                    {
+                        cSetNames.insert(iter.key(), cSetNames.size());
+                    }
+
+                    IOobjectList fSets(objects.lookupClass(faceSet::typeName));
+                    forAllConstIter(IOobjectList, fSets, iter)
+                    {
+                        fSetNames.insert(iter.key(), fSetNames.size());
+                    }
+                    IOobjectList pSets(objects.lookupClass(pointSet::typeName));
+                    forAllConstIter(IOobjectList, pSets, iter)
+                    {
+                        pSetNames.insert(iter.key(), pSetNames.size());
+                    }
+                }
+
+                // Construct all sets
+                PtrList<cellSet> cellSets(cSetNames.size());
+                PtrList<faceSet> faceSets(fSetNames.size());
+                PtrList<pointSet> pointSets(pSetNames.size());
+
+                // Load sets
+                forAll(procMeshes.meshes(), procI)
+                {
+                    const fvMesh& procMesh = procMeshes.meshes()[procI];
+
+                    IOobjectList objects
+                    (
+                        procMesh, procMesh.facesInstance(), "polyMesh/sets"
+                    );
+
+                    // cellSets
+                    const labelList& cellMap =
+                        procMeshes.cellProcAddressing()[procI];
+
+                    IOobjectList cSets(objects.lookupClass(cellSet::typeName));
+                    forAllConstIter(IOobjectList, cSets, iter)
+                    {
+                        // Load cellSet
+                        const cellSet procSet(*iter());
+                        label setI = cSetNames[iter.key()];
+                        if (!cellSets.set(setI))
+                        {
+                            cellSets.set
+                            (
+                                setI,
+                                new cellSet(mesh, iter.key(), procSet.size())
+                            );
+                        }
+                        cellSet& cSet = cellSets[setI];
+
+                        forAllConstIter(cellSet, procSet, iter)
+                        {
+                            cSet.insert(cellMap[iter.key()]);
+                        }
+                    }
+
+                    // faceSets
+                    const labelList& faceMap =
+                        procMeshes.faceProcAddressing()[procI];
+
+                    IOobjectList fSets(objects.lookupClass(faceSet::typeName));
+                    forAllConstIter(IOobjectList, fSets, iter)
+                    {
+                        // Load faceSet
+                        const faceSet procSet(*iter());
+                        label setI = fSetNames[iter.key()];
+                        if (!faceSets.set(setI))
+                        {
+                            faceSets.set
+                            (
+                                setI,
+                                new faceSet(mesh, iter.key(), procSet.size())
+                            );
+                        }
+                        faceSet& fSet = faceSets[setI];
+
+                        forAllConstIter(faceSet, procSet, iter)
+                        {
+                            fSet.insert(mag(faceMap[iter.key()])-1);
+                        }
+                    }
+                    // pointSets
+                    const labelList& pointMap =
+                        procMeshes.pointProcAddressing()[procI];
+
+                    IOobjectList pSets(objects.lookupClass(pointSet::typeName));
+                    forAllConstIter(IOobjectList, pSets, iter)
+                    {
+                        // Load pointSet
+                        const pointSet propSet(*iter());
+                        label setI = pSetNames[iter.key()];
+                        if (!pointSets.set(setI))
+                        {
+                            pointSets.set
+                            (
+                                setI,
+                                new pointSet(mesh, iter.key(), propSet.size())
+                            );
+                        }
+                        pointSet& pSet = pointSets[setI];
+
+                        forAllConstIter(pointSet, propSet, iter)
+                        {
+                            pSet.insert(pointMap[iter.key()]);
+                        }
+                    }
+                }
+
+                // Write sets
+                forAll(cellSets, i)
+                {
+                    cellSets[i].write();
+                }
+                forAll(faceSets, i)
+                {
+                    faceSets[i].write();
+                }
+                forAll(pointSets, i)
+                {
+                    pointSets[i].write();
+                }
+            }
         }
     }
 

applications/utilities/postProcessing/graphics/PV398Readers/PV398FoamReader/vtkPV398Foam/Make/files

@@ -1,11 +0,0 @@
-vtkPV398Foam.C
-vtkPV398FoamFields.C
-vtkPV398FoamMesh.C
-vtkPV398FoamMeshLagrangian.C
-vtkPV398FoamMeshSet.C
-vtkPV398FoamMeshVolume.C
-vtkPV398FoamMeshZone.C
-vtkPV398FoamUpdateInfo.C
-vtkPV398FoamUtils.C
-
-LIB = $(FOAM_LIBBIN)/libvtkPV398Foam

applications/utilities/postProcessing/graphics/PV398Readers/PV398blockMeshReader/vtkPV398blockMesh/Make/files

@@ -1,5 +0,0 @@
-vtkPV398blockMesh.C
-vtkPV398blockMeshConvert.C
-vtkPV398blockMeshUtils.C
-
-LIB = $(FOAM_LIBBIN)/libvtkPV398blockMesh

applications/utilities/postProcessing/graphics/PV398Readers/vtkPV398Readers/Make/files

@@ -1,3 +0,0 @@
-vtkPV398Readers.C
-
-LIB = $(FOAM_LIBBIN)/libvtkPV398Readers

applications/utilities/postProcessing/graphics/PV3Readers/Allwmake

@@ -2,7 +2,7 @@
 cd ${0%/*} || exit 1    # run from this directory
 #set -x
 
-if [ "$ParaView_VERSION" != "3.98.1" ]
+if [ "$ParaView_VERSION" != "4.0.1" ]
     then
     if [ -d "$ParaView_DIR" -a -r "$ParaView_DIR" ]
     then

applications/utilities/postProcessing/graphics/PV4Readers/Allwclean

@@ -2,8 +2,8 @@
 cd ${0%/*} || exit 1    # run from this directory
 set -x
 
-wclean libso vtkPV398Readers
-PV398blockMeshReader/Allwclean
-PV398FoamReader/Allwclean
+wclean libso vtkPV4Readers
+PV4blockMeshReader/Allwclean
+PV4FoamReader/Allwclean
 
 # ----------------------------------------------------------------- end-of-file

applications/utilities/postProcessing/graphics/PV4Readers/Allwmake

@@ -2,7 +2,7 @@
 cd ${0%/*} || exit 1    # run from this directory
 #set -x
 
-if [ "$ParaView_VERSION" == "3.98.1" ]
+if [ "$ParaView_VERSION" == "4.0.1" ]
     then
     if [ -d "$ParaView_DIR" -a -r "$ParaView_DIR" ]
     then
@@ -14,14 +14,14 @@ if [ "$ParaView_VERSION" == "3.98.1" ]
         # ensure CMake gets the correct C++ compiler
         [ -n "$WM_CXX" ] && export CXX="$WM_CXX"
 
-        wmake libso vtkPV398Readers
-        PV398blockMeshReader/Allwmake
-        PV398FoamReader/Allwmake
+        wmake libso vtkPV4Readers
+        PV4blockMeshReader/Allwmake
+        PV4FoamReader/Allwmake
     else
         echo "ERROR: ParaView not found in $ParaView_DIR"
     fi
 else
-    echo "WARN: PV398 readers not building: ParaView_VERSION=$ParaView_VERSION"
+    echo "WARN: PV4 readers not building: ParaView_VERSION=$ParaView_VERSION"
 fi
 
 # ----------------------------------------------------------------- end-of-file

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/Allwclean

@@ -3,9 +3,9 @@ cd ${0%/*} || exit 1    # run from this directory
 set -x
 
 # deal with client/server vs combined plugins
-rm -f $FOAM_LIBBIN/libPV398FoamReader* 2>/dev/null
+rm -f $FOAM_LIBBIN/libPV4FoamReader* 2>/dev/null
 
-rm -rf PV398FoamReader/Make
-wclean libso vtkPV398Foam
+rm -rf PV4FoamReader/Make
+wclean libso vtkPV4Foam
 
 # ----------------------------------------------------------------- end-of-file

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/Allwmake

@@ -4,9 +4,9 @@ set -x
 
 if [ -d "$ParaView_DIR" -a -r "$ParaView_DIR" ]
 then
-    wmake libso vtkPV398Foam
+    wmake libso vtkPV4Foam
     (
-        cd PV398FoamReader
+        cd PV4FoamReader
         mkdir -p Make/$WM_OPTIONS > /dev/null 2>&1
         cd Make/$WM_OPTIONS
         cmake ../..

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/PV4FoamReader/CMakeLists.txt

@@ -21,7 +21,7 @@ INCLUDE_DIRECTORIES(
     $ENV{WM_PROJECT_DIR}/src/OpenFOAM/lnInclude
     $ENV{WM_PROJECT_DIR}/src/OSspecific/$ENV{WM_OSTYPE}/lnInclude
     $ENV{WM_PROJECT_DIR}/src/finiteVolume/lnInclude
-    ${PROJECT_SOURCE_DIR}/../vtkPV398Foam
+    ${PROJECT_SOURCE_DIR}/../vtkPV4Foam
 )
 
 ADD_DEFINITIONS(
@@ -41,45 +41,45 @@ SET(
 #
 
 # Extend the auto-generated panel
-QT4_WRAP_CPP(MOC_SRCS pqPV398FoamReaderPanel.h)
+QT4_WRAP_CPP(MOC_SRCS pqPV4FoamReaderPanel.h)
 
 ADD_PARAVIEW_OBJECT_PANEL(IFACES IFACE_SRCS
-  CLASS_NAME pqPV398FoamReaderPanel
-  XML_NAME  PV398FoamReader  # name of SourceProxy in *SM.xml
+  CLASS_NAME pqPV4FoamReaderPanel
+  XML_NAME  PV4FoamReader  # name of SourceProxy in *SM.xml
   XML_GROUP sources
 )
 
 ADD_PARAVIEW_PLUGIN(
-    PV398FoamReader_SM "1.0"
-    SERVER_MANAGER_XML PV398FoamReader_SM.xml
-    SERVER_MANAGER_SOURCES vtkPV398FoamReader.cxx
+    PV4FoamReader_SM "1.0"
+    SERVER_MANAGER_XML PV4FoamReader_SM.xml
+    SERVER_MANAGER_SOURCES vtkPV4FoamReader.cxx
     GUI_INTERFACES ${IFACES}
-    GUI_SOURCES pqPV398FoamReaderPanel.cxx
+    GUI_SOURCES pqPV4FoamReaderPanel.cxx
         ${MOC_SRCS} ${UI_SRCS} ${IFACE_SRCS}
-    GUI_RESOURCE_FILES PV398FoamReader.xml
+    GUI_RESOURCE_FILES PV4FoamReader.xml
 )
 
 # #
 # # Define the server-side portion of the reader plugin
 # #
 # ADD_PARAVIEW_PLUGIN(
-#     PV398FoamReader_SM "1.0"
-#     SERVER_MANAGER_XML PV398FoamReader_SM.xml
-#     SERVER_MANAGER_SOURCES vtkPV398FoamReader.cxx
+#     PV4FoamReader_SM "1.0"
+#     SERVER_MANAGER_XML PV4FoamReader_SM.xml
+#     SERVER_MANAGER_SOURCES vtkPV4FoamReader.cxx
 # )
 # #
 # # Define the client-side portion of the reader plugin
 # #
 # ADD_PARAVIEW_PLUGIN(
-#     PV398FoamReader "1.0"
+#     PV4FoamReader "1.0"
 #     GUI_RESOURCES PV3FoamReader.qrc
 # )
 #
 
 TARGET_LINK_LIBRARIES(
-    PV398FoamReader_SM
+    PV4FoamReader_SM
     OpenFOAM
     finiteVolume
-    vtkPV398Foam
+    vtkPV4Foam
 )
 #-----------------------------------------------------------------------------

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/PV4FoamReader/PV4FoamReader.qrc

@@ -1,5 +1,5 @@
 <RCC>
     <qresource prefix="/ParaViewResources" >
-        <file>PV398FoamReader.xml</file>
+        <file>PV4FoamReader.xml</file>
     </qresource>
 </RCC>

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/PV4FoamReader/PV4FoamReader.xml

@@ -1,5 +1,5 @@
 <ParaViewReaders>
-  <Reader name="PV398FoamReader"
+  <Reader name="PV4FoamReader"
           extensions="OpenFOAM"
           file_description="OpenFOAM Reader">
   </Reader>

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/PV4FoamReader/PV4FoamReader_SM.xml

@@ -1,8 +1,8 @@
 <ServerManagerConfiguration>
   <ProxyGroup name="sources">
   <SourceProxy
-    name="PV398FoamReader"
-    class="vtkPV398FoamReader">
+    name="PV4FoamReader"
+    class="vtkPV4FoamReader">
 
     <!-- File name - compulsory -->
     <StringVectorProperty

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/PV4FoamReader/pqPV4FoamReaderPanel.cxx

@@ -23,7 +23,7 @@ License
 
 \*---------------------------------------------------------------------------*/
 
-#include "pqPV398FoamReaderPanel.h"
+#include "pqPV4FoamReaderPanel.h"
 
 // QT
 #include <QGridLayout>
@@ -50,7 +50,7 @@ License
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-pqPV398FoamReaderPanel::pqPV398FoamReaderPanel
+pqPV4FoamReaderPanel::pqPV4FoamReaderPanel
 (
     pqProxy *proxy,
     QWidget *p
@@ -339,7 +339,7 @@ pqPV398FoamReaderPanel::pqPV398FoamReaderPanel
 
 // * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * * //
 
-void pqPV398FoamReaderPanel::CacheMeshToggled()
+void pqPV4FoamReaderPanel::CacheMeshToggled()
 {
     vtkSMIntVectorProperty::SafeDownCast
     (
@@ -348,7 +348,7 @@ void pqPV398FoamReaderPanel::CacheMeshToggled()
 }
 
 
-void pqPV398FoamReaderPanel::RefreshPressed()
+void pqPV4FoamReaderPanel::RefreshPressed()
 {
     // update everything
     vtkSMIntVectorProperty::SafeDownCast
@@ -363,7 +363,7 @@ void pqPV398FoamReaderPanel::RefreshPressed()
 }
 
 
-void pqPV398FoamReaderPanel::ZeroTimeToggled()
+void pqPV4FoamReaderPanel::ZeroTimeToggled()
 {
     vtkSMIntVectorProperty::SafeDownCast
     (
@@ -374,7 +374,7 @@ void pqPV398FoamReaderPanel::ZeroTimeToggled()
 }
 
 
-void pqPV398FoamReaderPanel::ShowPatchNamesToggled()
+void pqPV4FoamReaderPanel::ShowPatchNamesToggled()
 {
     vtkSMIntVectorProperty::SafeDownCast
     (
@@ -391,7 +391,7 @@ void pqPV398FoamReaderPanel::ShowPatchNamesToggled()
 }
 
 
-void pqPV398FoamReaderPanel::ShowGroupsOnlyToggled()
+void pqPV4FoamReaderPanel::ShowGroupsOnlyToggled()
 {
     vtkSMProperty* prop;
 
@@ -407,7 +407,7 @@ void pqPV398FoamReaderPanel::ShowGroupsOnlyToggled()
 }
 
 
-void pqPV398FoamReaderPanel::IncludeSetsToggled()
+void pqPV4FoamReaderPanel::IncludeSetsToggled()
 {
     vtkSMProperty* prop;
 
@@ -423,7 +423,7 @@ void pqPV398FoamReaderPanel::IncludeSetsToggled()
 }
 
 
-void pqPV398FoamReaderPanel::IncludeZonesToggled()
+void pqPV4FoamReaderPanel::IncludeZonesToggled()
 {
     vtkSMProperty* prop;
 
@@ -439,7 +439,7 @@ void pqPV398FoamReaderPanel::IncludeZonesToggled()
 }
 
 
-void pqPV398FoamReaderPanel::ExtrapolatePatchesToggled()
+void pqPV4FoamReaderPanel::ExtrapolatePatchesToggled()
 {
     vtkSMProperty* prop;
 
@@ -452,7 +452,7 @@ void pqPV398FoamReaderPanel::ExtrapolatePatchesToggled()
 }
 
 
-void pqPV398FoamReaderPanel::InterpolateVolFieldsToggled()
+void pqPV4FoamReaderPanel::InterpolateVolFieldsToggled()
 {
     vtkSMProperty* prop;
 

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/PV4FoamReader/pqPV4FoamReaderPanel.h

@@ -22,19 +22,19 @@ License
     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
 Class
-    pqPV398FoamReaderPanel
+    pqPV4FoamReaderPanel
 
 Description
     GUI modifications for the ParaView reader panel
 
-    A custom panel for the PV398FoamReader.
+    A custom panel for the PV4FoamReader.
 
 SourceFiles
-    pqPV398FoamReaderPanel.cxx
+    pqPV4FoamReaderPanel.cxx
 
 \*---------------------------------------------------------------------------*/
-#ifndef pqPV398FoamReaderPanel_h
-#define pqPV398FoamReaderPanel_h
+#ifndef pqPV4FoamReaderPanel_h
+#define pqPV4FoamReaderPanel_h
 
 
 #include "pqAutoGeneratedObjectPanel.h"
@@ -51,10 +51,10 @@ class vtkSMSourceProxy;
 
 
 /*---------------------------------------------------------------------------*\
-                  Class pqPV398FoamReaderPanel Declaration
+                  Class pqPV4FoamReaderPanel Declaration
 \*---------------------------------------------------------------------------*/
 
-class pqPV398FoamReaderPanel
+class pqPV4FoamReaderPanel
 :
     public pqAutoGeneratedObjectPanel
 {
@@ -105,11 +105,11 @@ public:
     // Constructors
 
         //- Construct from components
-        pqPV398FoamReaderPanel(pqProxy*, QWidget*);
+        pqPV4FoamReaderPanel(pqProxy*, QWidget*);
 
 
     //- Destructor
-    // virtual ~pqPV398FoamReaderPanel();
+    // virtual ~pqPV4FoamReaderPanel();
 };
 
 

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/PV4FoamReader/vtkPV4FoamReader.cxx

@@ -22,7 +22,7 @@ License
     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
 \*---------------------------------------------------------------------------*/
-#include "vtkPV398FoamReader.h"
+#include "vtkPV4FoamReader.h"
 
 #include "pqApplicationCore.h"
 #include "pqRenderView.h"
@@ -40,18 +40,18 @@ License
 #include "vtkStringArray.h"
 
 // OpenFOAM includes
-#include "vtkPV398Foam.H"
+#include "vtkPV4Foam.H"
 
 #undef EXPERIMENTAL_TIME_CACHING
 
 // * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
-vtkStandardNewMacro(vtkPV398FoamReader);
+vtkStandardNewMacro(vtkPV4FoamReader);
 
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-vtkPV398FoamReader::vtkPV398FoamReader()
+vtkPV4FoamReader::vtkPV4FoamReader()
 {
     Debug = 0;
     vtkDebugMacro(<<"Constructor");
@@ -63,7 +63,7 @@ vtkPV398FoamReader::vtkPV398FoamReader()
 
     output0_  = NULL;
 
-#ifdef VTKPV398FOAM_DUALPORT
+#ifdef VTKPV4FOAM_DUALPORT
     // Add second output for the Lagrangian
     this->SetNumberOfOutputPorts(2);
     vtkMultiBlockDataSet *lagrangian = vtkMultiBlockDataSet::New();
@@ -100,7 +100,7 @@ vtkPV398FoamReader::vtkPV398FoamReader()
     SelectionObserver = vtkCallbackCommand::New();
     SelectionObserver->SetCallback
     (
-        &vtkPV398FoamReader::SelectionModifiedCallback
+        &vtkPV4FoamReader::SelectionModifiedCallback
     );
     SelectionObserver->SetClientData(this);
 
@@ -129,7 +129,7 @@ vtkPV398FoamReader::vtkPV398FoamReader()
 
 // * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
 
-vtkPV398FoamReader::~vtkPV398FoamReader()
+vtkPV4FoamReader::~vtkPV4FoamReader()
 {
     vtkDebugMacro(<<"Deconstructor");
 
@@ -168,7 +168,7 @@ vtkPV398FoamReader::~vtkPV398FoamReader()
 // * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * * //
 
 // Do everything except set the output info
-int vtkPV398FoamReader::RequestInformation
+int vtkPV4FoamReader::RequestInformation
 (
     vtkInformation* vtkNotUsed(request),
     vtkInformationVector** vtkNotUsed(inputVector),
@@ -177,7 +177,7 @@ int vtkPV398FoamReader::RequestInformation
 {
     vtkDebugMacro(<<"RequestInformation");
 
-    if (Foam::vtkPV398Foam::debug)
+    if (Foam::vtkPV4Foam::debug)
     {
         cout<<"REQUEST_INFORMATION\n";
     }
@@ -190,7 +190,7 @@ int vtkPV398FoamReader::RequestInformation
 
     int nInfo = outputVector->GetNumberOfInformationObjects();
 
-    if (Foam::vtkPV398Foam::debug)
+    if (Foam::vtkPV4Foam::debug)
     {
         cout<<"RequestInformation with " << nInfo << " item(s)\n";
         for (int infoI = 0; infoI < nInfo; ++infoI)
@@ -201,7 +201,7 @@ int vtkPV398FoamReader::RequestInformation
 
     if (!foamData_)
     {
-        foamData_ = new Foam::vtkPV398Foam(FileName, this);
+        foamData_ = new Foam::vtkPV4Foam(FileName, this);
     }
     else
     {
@@ -238,7 +238,7 @@ int vtkPV398FoamReader::RequestInformation
         timeRange[0] = timeSteps[0];
         timeRange[1] = timeSteps[nTimeSteps-1];
 
-        if (Foam::vtkPV398Foam::debug > 1)
+        if (Foam::vtkPV4Foam::debug > 1)
         {
             cout<<"nTimeSteps " << nTimeSteps << "\n"
                 <<"timeRange " << timeRange[0] << " to " << timeRange[1]
@@ -268,7 +268,7 @@ int vtkPV398FoamReader::RequestInformation
 
 
 // Set the output info
-int vtkPV398FoamReader::RequestData
+int vtkPV4FoamReader::RequestData
 (
     vtkInformation* vtkNotUsed(request),
     vtkInformationVector** vtkNotUsed(inputVector),
@@ -292,7 +292,7 @@ int vtkPV398FoamReader::RequestData
 
     int nInfo = outputVector->GetNumberOfInformationObjects();
 
-    if (Foam::vtkPV398Foam::debug)
+    if (Foam::vtkPV4Foam::debug)
     {
         cout<<"RequestData with " << nInfo << " item(s)\n";
         for (int infoI = 0; infoI < nInfo; ++infoI)
@@ -310,7 +310,7 @@ int vtkPV398FoamReader::RequestData
     // taking port0 as the lead for other outputs would be nice, but fails when
     // a filter is added - we need to check everything
     // but since PREVIOUS_UPDATE_TIME_STEPS() is protected, relay the logic
-    // to the vtkPV398Foam::setTime() method
+    // to the vtkPV4Foam::setTime() method
     for (int infoI = 0; infoI < nInfo; ++infoI)
     {
         vtkInformation *outInfo = outputVector->GetInformationObject(infoI);
@@ -342,7 +342,7 @@ int vtkPV398FoamReader::RequestData
         )
     );
 
-    if (Foam::vtkPV398Foam::debug)
+    if (Foam::vtkPV4Foam::debug)
     {
         cout<< "update output with "
             << output->GetNumberOfBlocks() << " blocks\n";
@@ -370,7 +370,7 @@ int vtkPV398FoamReader::RequestData
         output->ShallowCopy(output0_);
     }
 
-    if (Foam::vtkPV398Foam::debug)
+    if (Foam::vtkPV4Foam::debug)
     {
         if (needsUpdate)
         {
@@ -390,7 +390,7 @@ int vtkPV398FoamReader::RequestData
 
 #else
 
-#ifdef VTKPV398FOAM_DUALPORT
+#ifdef VTKPV4FOAM_DUALPORT
     foamData_->Update
     (
         output,
@@ -417,13 +417,13 @@ int vtkPV398FoamReader::RequestData
 }
 
 
-void vtkPV398FoamReader::SetRefresh(int val)
+void vtkPV4FoamReader::SetRefresh(int val)
 {
     Modified();
 }
 
 
-void vtkPV398FoamReader::SetIncludeSets(int val)
+void vtkPV4FoamReader::SetIncludeSets(int val)
 {
     if (IncludeSets != val)
     {
@@ -436,7 +436,7 @@ void vtkPV398FoamReader::SetIncludeSets(int val)
 }
 
 
-void vtkPV398FoamReader::SetIncludeZones(int val)
+void vtkPV4FoamReader::SetIncludeZones(int val)
 {
     if (IncludeZones != val)
     {
@@ -449,7 +449,7 @@ void vtkPV398FoamReader::SetIncludeZones(int val)
 }
 
 
-void vtkPV398FoamReader::SetShowPatchNames(int val)
+void vtkPV4FoamReader::SetShowPatchNames(int val)
 {
     if (ShowPatchNames != val)
     {
@@ -459,7 +459,7 @@ void vtkPV398FoamReader::SetShowPatchNames(int val)
 }
 
 
-void vtkPV398FoamReader::SetShowGroupsOnly(int val)
+void vtkPV4FoamReader::SetShowGroupsOnly(int val)
 {
     if (ShowGroupsOnly != val)
     {
@@ -472,7 +472,7 @@ void vtkPV398FoamReader::SetShowGroupsOnly(int val)
 }
 
 
-void vtkPV398FoamReader::updatePatchNamesView(const bool show)
+void vtkPV4FoamReader::updatePatchNamesView(const bool show)
 {
     pqApplicationCore* appCore = pqApplicationCore::instance();
 
@@ -506,7 +506,7 @@ void vtkPV398FoamReader::updatePatchNamesView(const bool show)
 }
 
 
-void vtkPV398FoamReader::PrintSelf(ostream& os, vtkIndent indent)
+void vtkPV4FoamReader::PrintSelf(ostream& os, vtkIndent indent)
 {
     vtkDebugMacro(<<"PrintSelf");
 
@@ -522,7 +522,7 @@ void vtkPV398FoamReader::PrintSelf(ostream& os, vtkIndent indent)
 }
 
 
-int vtkPV398FoamReader::GetTimeStep()
+int vtkPV4FoamReader::GetTimeStep()
 {
     return foamData_ ? foamData_->timeIndex() : -1;
 }
@@ -531,35 +531,35 @@ int vtkPV398FoamReader::GetTimeStep()
 // ----------------------------------------------------------------------
 // Parts selection list control
 
-vtkDataArraySelection* vtkPV398FoamReader::GetPartSelection()
+vtkDataArraySelection* vtkPV4FoamReader::GetPartSelection()
 {
     vtkDebugMacro(<<"GetPartSelection");
     return PartSelection;
 }
 
 
-int vtkPV398FoamReader::GetNumberOfPartArrays()
+int vtkPV4FoamReader::GetNumberOfPartArrays()
 {
     vtkDebugMacro(<<"GetNumberOfPartArrays");
     return PartSelection->GetNumberOfArrays();
 }
 
 
-const char* vtkPV398FoamReader::GetPartArrayName(int index)
+const char* vtkPV4FoamReader::GetPartArrayName(int index)
 {
     vtkDebugMacro(<<"GetPartArrayName");
     return PartSelection->GetArrayName(index);
 }
 
 
-int vtkPV398FoamReader::GetPartArrayStatus(const char* name)
+int vtkPV4FoamReader::GetPartArrayStatus(const char* name)
 {
     vtkDebugMacro(<<"GetPartArrayStatus");
     return PartSelection->ArrayIsEnabled(name);
 }
 
 
-void vtkPV398FoamReader::SetPartArrayStatus(const char* name, int status)
+void vtkPV4FoamReader::SetPartArrayStatus(const char* name, int status)
 {
     vtkDebugMacro("Set mesh part \"" << name << "\" status to: " << status);
 
@@ -577,35 +577,35 @@ void vtkPV398FoamReader::SetPartArrayStatus(const char* name, int status)
 // ----------------------------------------------------------------------
 // volField selection list control
 
-vtkDataArraySelection* vtkPV398FoamReader::GetVolFieldSelection()
+vtkDataArraySelection* vtkPV4FoamReader::GetVolFieldSelection()
 {
     vtkDebugMacro(<<"GetVolFieldSelection");
     return VolFieldSelection;
 }
 
 
-int vtkPV398FoamReader::GetNumberOfVolFieldArrays()
+int vtkPV4FoamReader::GetNumberOfVolFieldArrays()
 {
     vtkDebugMacro(<<"GetNumberOfVolFieldArrays");
     return VolFieldSelection->GetNumberOfArrays();
 }
 
 
-const char* vtkPV398FoamReader::GetVolFieldArrayName(int index)
+const char* vtkPV4FoamReader::GetVolFieldArrayName(int index)
 {
     vtkDebugMacro(<<"GetVolFieldArrayName");
     return VolFieldSelection->GetArrayName(index);
 }
 
 
-int vtkPV398FoamReader::GetVolFieldArrayStatus(const char* name)
+int vtkPV4FoamReader::GetVolFieldArrayStatus(const char* name)
 {
     vtkDebugMacro(<<"GetVolFieldArrayStatus");
     return VolFieldSelection->ArrayIsEnabled(name);
 }
 
 
-void vtkPV398FoamReader::SetVolFieldArrayStatus(const char* name, int status)
+void vtkPV4FoamReader::SetVolFieldArrayStatus(const char* name, int status)
 {
     vtkDebugMacro(<<"SetVolFieldArrayStatus");
     if (status)
@@ -622,35 +622,35 @@ void vtkPV398FoamReader::SetVolFieldArrayStatus(const char* name, int status)
 // ----------------------------------------------------------------------
 // pointField selection list control
 
-vtkDataArraySelection* vtkPV398FoamReader::GetPointFieldSelection()
+vtkDataArraySelection* vtkPV4FoamReader::GetPointFieldSelection()
 {
     vtkDebugMacro(<<"GetPointFieldSelection");
     return PointFieldSelection;
 }
 
 
-int vtkPV398FoamReader::GetNumberOfPointFieldArrays()
+int vtkPV4FoamReader::GetNumberOfPointFieldArrays()
 {
     vtkDebugMacro(<<"GetNumberOfPointFieldArrays");
     return PointFieldSelection->GetNumberOfArrays();
 }
 
 
-const char* vtkPV398FoamReader::GetPointFieldArrayName(int index)
+const char* vtkPV4FoamReader::GetPointFieldArrayName(int index)
 {
     vtkDebugMacro(<<"GetPointFieldArrayName");
     return PointFieldSelection->GetArrayName(index);
 }
 
 
-int vtkPV398FoamReader::GetPointFieldArrayStatus(const char* name)
+int vtkPV4FoamReader::GetPointFieldArrayStatus(const char* name)
 {
     vtkDebugMacro(<<"GetPointFieldArrayStatus");
     return PointFieldSelection->ArrayIsEnabled(name);
 }
 
 
-void vtkPV398FoamReader::SetPointFieldArrayStatus(const char* name, int status)
+void vtkPV4FoamReader::SetPointFieldArrayStatus(const char* name, int status)
 {
     vtkDebugMacro(<<"SetPointFieldArrayStatus");
     if (status)
@@ -667,35 +667,35 @@ void vtkPV398FoamReader::SetPointFieldArrayStatus(const char* name, int status)
 // ----------------------------------------------------------------------
 // lagrangianField selection list control
 
-vtkDataArraySelection* vtkPV398FoamReader::GetLagrangianFieldSelection()
+vtkDataArraySelection* vtkPV4FoamReader::GetLagrangianFieldSelection()
 {
     vtkDebugMacro(<<"GetLagrangianFieldSelection");
     return LagrangianFieldSelection;
 }
 
 
-int vtkPV398FoamReader::GetNumberOfLagrangianFieldArrays()
+int vtkPV4FoamReader::GetNumberOfLagrangianFieldArrays()
 {
     vtkDebugMacro(<<"GetNumberOfLagrangianFieldArrays");
     return LagrangianFieldSelection->GetNumberOfArrays();
 }
 
 
-const char* vtkPV398FoamReader::GetLagrangianFieldArrayName(int index)
+const char* vtkPV4FoamReader::GetLagrangianFieldArrayName(int index)
 {
     vtkDebugMacro(<<"GetLagrangianFieldArrayName");
     return LagrangianFieldSelection->GetArrayName(index);
 }
 
 
-int vtkPV398FoamReader::GetLagrangianFieldArrayStatus(const char* name)
+int vtkPV4FoamReader::GetLagrangianFieldArrayStatus(const char* name)
 {
     vtkDebugMacro(<<"GetLagrangianFieldArrayStatus");
     return LagrangianFieldSelection->ArrayIsEnabled(name);
 }
 
 
-void vtkPV398FoamReader::SetLagrangianFieldArrayStatus
+void vtkPV4FoamReader::SetLagrangianFieldArrayStatus
 (
     const char* name,
     int status
@@ -715,7 +715,7 @@ void vtkPV398FoamReader::SetLagrangianFieldArrayStatus
 
 // ----------------------------------------------------------------------
 
-void vtkPV398FoamReader::SelectionModifiedCallback
+void vtkPV4FoamReader::SelectionModifiedCallback
 (
     vtkObject*,
     unsigned long,
@@ -723,18 +723,18 @@ void vtkPV398FoamReader::SelectionModifiedCallback
     void*
 )
 {
-    static_cast<vtkPV398FoamReader*>(clientdata)->SelectionModified();
+    static_cast<vtkPV4FoamReader*>(clientdata)->SelectionModified();
 }
 
 
-void vtkPV398FoamReader::SelectionModified()
+void vtkPV4FoamReader::SelectionModified()
 {
     vtkDebugMacro(<<"SelectionModified");
     Modified();
 }
 
 
-int vtkPV398FoamReader::FillOutputPortInformation
+int vtkPV4FoamReader::FillOutputPortInformation
 (
     int port,
     vtkInformation* info

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/PV4FoamReader/vtkPV4FoamReader.h

@@ -22,21 +22,21 @@ License
     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
 Class
-    vtkPV398FoamReader
+    vtkPV4FoamReader
 
 Description
     reads a dataset in OpenFOAM format
 
-    vtkPV398blockMeshReader creates an multiblock dataset.
+    vtkPV4blockMeshReader creates an multiblock dataset.
     It uses the OpenFOAM infrastructure (fvMesh, etc) to handle mesh and
     field data.
 
 SourceFiles
-    vtkPV398blockMeshReader.cxx
+    vtkPV4blockMeshReader.cxx
 
 \*---------------------------------------------------------------------------*/
-#ifndef vtkPV398FoamReader_h
-#define vtkPV398FoamReader_h
+#ifndef vtkPV4FoamReader_h
+#define vtkPV4FoamReader_h
 
 // VTK includes
 #include "vtkMultiBlockDataSetAlgorithm.h"
@@ -50,23 +50,23 @@ class vtkCallbackCommand;
 // OpenFOAM forward declarations
 namespace Foam
 {
-    class vtkPV398Foam;
+    class vtkPV4Foam;
 }
 
 
 /*---------------------------------------------------------------------------*\
-                     Class vtkPV398FoamReader Declaration
+                     Class vtkPV4FoamReader Declaration
 \*---------------------------------------------------------------------------*/
 
-class vtkPV398FoamReader
+class vtkPV4FoamReader
 :
     public vtkMultiBlockDataSetAlgorithm
 {
 public:
-    vtkTypeMacro(vtkPV398FoamReader, vtkMultiBlockDataSetAlgorithm);
+    vtkTypeMacro(vtkPV4FoamReader, vtkMultiBlockDataSetAlgorithm);
     void PrintSelf(ostream&, vtkIndent);
 
-    static vtkPV398FoamReader* New();
+    static vtkPV4FoamReader* New();
 
     // Description:
     // Get the current timestep and the timestep range.
@@ -184,10 +184,10 @@ public:
 protected:
 
     //- Construct null
-    vtkPV398FoamReader();
+    vtkPV4FoamReader();
 
     //- Destructor
-    ~vtkPV398FoamReader();
+    ~vtkPV4FoamReader();
 
     //- Return information about mesh, times, etc without loading anything
     virtual int RequestInformation
@@ -218,10 +218,10 @@ protected:
 private:
 
     //- Disallow default bitwise copy construct
-    vtkPV398FoamReader(const vtkPV398FoamReader&);
+    vtkPV4FoamReader(const vtkPV4FoamReader&);
 
     //- Disallow default bitwise assignment
-    void operator=(const vtkPV398FoamReader&);
+    void operator=(const vtkPV4FoamReader&);
 
     //- Add/remove patch names to/from the view
     void updatePatchNamesView(const bool show);
@@ -251,7 +251,7 @@ private:
     vtkMultiBlockDataSet* output0_;
 
     //BTX
-    Foam::vtkPV398Foam* foamData_;
+    Foam::vtkPV4Foam* foamData_;
     //ETX
 };
 

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/vtkPV4Foam/Make/files

@@ -0,0 +1,11 @@
+vtkPV4Foam.C
+vtkPV4FoamFields.C
+vtkPV4FoamMesh.C
+vtkPV4FoamMeshLagrangian.C
+vtkPV4FoamMeshSet.C
+vtkPV4FoamMeshVolume.C
+vtkPV4FoamMeshZone.C
+vtkPV4FoamUpdateInfo.C
+vtkPV4FoamUtils.C
+
+LIB = $(FOAM_LIBBIN)/libvtkPV4Foam

applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/vtkPV4Foam/Make/options

@@ -4,8 +4,8 @@ EXE_INC = \
     -I$(LIB_SRC)/meshTools/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/lagrangian/basic/lnInclude \
-    -I../../vtkPV398Readers/lnInclude \
-    -I../PV398FoamReader \
+    -I../../vtkPV4Readers/lnInclude \
+    -I../PV4FoamReader \
     -I$(ParaView_INCLUDE_DIR) \
     $(shell \
         test -f $(ParaView_INCLUDE_DIR)/vtkPolyhedron.h && \
@@ -17,5 +17,5 @@ LIB_LIBS = \
     -lfiniteVolume \
     -lgenericPatchFields \
     -llagrangian \
-    -L$(FOAM_LIBBIN) -lvtkPV398Readers \
+    -L$(FOAM_LIBBIN) -lvtkPV4Readers \
     $(GLIBS)