Merge branch 'master' of ssh://noisy/home/noisy3/OpenFOAM/OpenFOAM-dev

applications/test/globalMeshData/Make/files

@@ -0,0 +1,3 @@
+globalMeshDataTest.C
+
+EXE = $(FOAM_USER_APPBIN)/globalMeshDataTest

applications/test/globalMeshData/Make/options

@@ -0,0 +1,3 @@
+EXE_INC =
+
+EXE_LIBS =

applications/test/globalMeshData/globalMeshDataTest.C

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+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 1991-2009 OpenCFD Ltd.
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Application
+    globalMeshDataTest
+
+Description
+    Test global point communication
+
+\*---------------------------------------------------------------------------*/
+
+#include "globalMeshData.H"
+#include "argList.H"
+#include "polyMesh.H"
+#include "Time.H"
+#include "mapDistribute.H"
+
+using namespace Foam;
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+// Main program:
+
+int main(int argc, char *argv[])
+{
+#   include "setRootCase.H"
+#   include "createTime.H"
+#   include "createPolyMesh.H"
+
+    const globalMeshData& globalData = mesh.globalData();
+    const indirectPrimitivePatch& coupledPatch = globalData.coupledPatch();
+
+
+    // Test:print shared points
+    {
+        const labelListList& globalPointSlaves =
+            globalData.globalPointSlaves();
+        const mapDistribute& globalPointSlavesMap =
+            globalData.globalPointSlavesMap();
+
+        pointField coords(globalPointSlavesMap.constructSize());
+        SubList<point>(coords, coupledPatch.nPoints()).assign
+        (
+            coupledPatch.localPoints()
+        );
+
+        // Exchange data
+        globalPointSlavesMap.distribute(coords);
+
+        // Print
+        forAll(globalPointSlaves, pointI)
+        {
+            const labelList& slavePoints = globalPointSlaves[pointI];
+
+            if (slavePoints.size() > 0)
+            {
+                Pout<< "Master point:" << pointI
+                    << " coord:" << coords[pointI]
+                    << " connected to slave points:" << endl;
+
+                forAll(slavePoints, i)
+                {
+                    Pout<< "    " << coords[slavePoints[i]] << endl;
+                }
+            }
+        }
+    }
+
+
+
+    // Test: point to faces addressing
+    {
+        const labelListList& globalPointBoundaryFaces =
+            globalData.globalPointBoundaryFaces();
+        const mapDistribute& globalPointBoundaryFacesMap =
+            globalData.globalPointBoundaryFacesMap();
+
+        label nBnd = mesh.nFaces()-mesh.nInternalFaces();
+
+        pointField fc(globalPointBoundaryFacesMap.constructSize());
+        SubList<point>(fc, nBnd).assign
+        (
+            primitivePatch
+            (
+                SubList<face>
+                (
+                    mesh.faces(),
+                    nBnd,
+                    mesh.nInternalFaces()
+                ),
+                mesh.points()
+            ).faceCentres()
+        );
+
+        // Exchange data
+        globalPointBoundaryFacesMap.distribute(fc);
+
+        // Print
+        forAll(globalPointBoundaryFaces, pointI)
+        {
+            const labelList& bFaces = globalPointBoundaryFaces[pointI];
+
+            Pout<< "Point:" << pointI
+                << " at:" << coupledPatch.localPoints()[pointI]
+                << " connected to faces:" << endl;
+
+            forAll(bFaces, i)
+            {
+                Pout<< "    " << fc[bFaces[i]] << endl;
+            }
+        }
+    }
+
+
+
+
+
+    // Test:point to cells addressing
+    {
+        const labelList& boundaryCells = globalData.boundaryCells();
+        const labelListList& globalPointBoundaryCells =
+            globalData.globalPointBoundaryCells();
+        const mapDistribute& globalPointBoundaryCellsMap =
+            globalData.globalPointBoundaryCellsMap();
+
+        pointField cc(globalPointBoundaryCellsMap.constructSize());
+        forAll(boundaryCells, i)
+        {
+            cc[i] = mesh.cellCentres()[boundaryCells[i]];
+        }
+
+        // Exchange data
+        globalPointBoundaryCellsMap.distribute(cc);
+
+        // Print
+        forAll(globalPointBoundaryCells, pointI)
+        {
+            const labelList& bCells = globalPointBoundaryCells[pointI];
+
+            Pout<< "Point:" << pointI
+                << " at:" << coupledPatch.localPoints()[pointI]
+                << " connected to cells:" << endl;
+
+            forAll(bCells, i)
+            {
+                Pout<< "    " << cc[bCells[i]] << endl;
+            }
+        }
+    }
+
+
+
+    // Test:print shared edges
+    {
+        const labelListList& globalEdgeSlaves =
+            globalData.globalEdgeSlaves();
+        const mapDistribute& globalEdgeSlavesMap =
+            globalData.globalEdgeSlavesMap();
+
+        // Test: distribute edge centres
+        pointField ec(globalEdgeSlavesMap.constructSize());
+        forAll(coupledPatch.edges(), edgeI)
+        {
+            ec[edgeI] = coupledPatch.edges()[edgeI].centre
+            (
+                coupledPatch.localPoints()
+            );
+        }
+
+        // Exchange data
+        globalEdgeSlavesMap.distribute(ec);
+
+        // Print
+        forAll(globalEdgeSlaves, edgeI)
+        {
+            const labelList& slaveEdges = globalEdgeSlaves[edgeI];
+
+            if (slaveEdges.size() > 0)
+            {
+                Pout<< "Master edge:" << edgeI
+                    << " centre:" << ec[edgeI]
+                    << " connected to slave edges:" << endl;
+
+                forAll(slaveEdges, i)
+                {
+                    Pout<< "    " << ec[slaveEdges[i]] << endl;
+                }
+            }
+        }
+    }
+
+
+    Info<< "End\n" << endl;
+
+    return 0;
+}
+
+
+// ************************************************************************* //

applications/test/syncTools/Make/files

@@ -0,0 +1,3 @@
+syncToolsTest.C
+
+EXE = $(FOAM_USER_APPBIN)/syncToolsTest

applications/test/syncTools/Make/options

@@ -0,0 +1 @@
+EXE_INC =

applications/test/syncTools/syncToolsTest.C

@@ -0,0 +1,629 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 1991-2007 OpenCFD Ltd.
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Application
+    syncToolsTest
+
+Description
+    Test some functionality in syncTools.
+
+\*---------------------------------------------------------------------------*/
+
+
+#include "argList.H"
+#include "polyMesh.H"
+#include "Time.H"
+#include "Random.H"
+#include "PackedList.H"
+#include "syncTools.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void testPackedList(const polyMesh& mesh, Random& rndGen)
+{
+    Info<< nl << "Testing PackedList synchronisation." << endl;
+
+    {
+        PackedList<3> bits(mesh.nEdges());
+        forAll(bits, i)
+        {
+            bits.set(i, rndGen.integer(0,3));
+        }
+
+        labelList edgeValues(mesh.nEdges());
+        forAll(bits, i)
+        {
+            edgeValues[i] = bits.get(i);
+        }
+
+        PackedList<3> maxBits(bits);
+        labelList maxEdgeValues(edgeValues);
+
+        syncTools::syncEdgeList(mesh, bits, minEqOp<unsigned int>(), 0);
+        syncTools::syncEdgeList(mesh, edgeValues, minEqOp<label>(), 0, false);
+
+        syncTools::syncEdgeList(mesh, maxBits, maxEqOp<unsigned int>(), 0);
+        syncTools::syncEdgeList(mesh, maxEdgeValues, maxEqOp<label>(), 0, false);
+
+        forAll(bits, i)
+        {
+            if
+            (
+                edgeValues[i] != label(bits.get(i))
+             || maxEdgeValues[i] != label(maxBits.get(i))
+            )
+            {
+                FatalErrorIn("testPackedList()")
+                    << "edge:" << i
+                    << " minlabel:" << edgeValues[i]
+                    << " minbits:" << bits.get(i)
+                    << " maxLabel:" << maxEdgeValues[i]
+                    << " maxBits:" << maxBits.get(i)
+                    << exit(FatalError);
+            }
+        }
+    }
+
+    {
+        PackedList<3> bits(mesh.nPoints());
+        forAll(bits, i)
+        {
+            bits.set(i, rndGen.integer(0,3));
+        }
+
+        labelList pointValues(mesh.nPoints());
+        forAll(bits, i)
+        {
+            pointValues[i] = bits.get(i);
+        }
+
+        PackedList<3> maxBits(bits);
+        labelList maxPointValues(pointValues);
+
+        syncTools::syncPointList(mesh, bits, minEqOp<unsigned int>(), 0);
+        syncTools::syncPointList(mesh, pointValues, minEqOp<label>(), 0, false);
+
+        syncTools::syncPointList(mesh, maxBits, maxEqOp<unsigned int>(), 0);
+        syncTools::syncPointList(mesh, maxPointValues, maxEqOp<label>(), 0, false);
+
+        forAll(bits, i)
+        {
+            if
+            (
+                pointValues[i] != label(bits.get(i))
+             || maxPointValues[i] != label(maxBits.get(i))
+            )
+            {
+                FatalErrorIn("testPackedList()")
+                    << "point:" << i
+                    << " minlabel:" << pointValues[i]
+                    << " minbits:" << bits.get(i)
+                    << " maxLabel:" << maxPointValues[i]
+                    << " maxBits:" << maxBits.get(i)
+                    << exit(FatalError);
+            }
+        }
+    }
+
+    {
+        PackedList<3> bits(mesh.nFaces());
+        forAll(bits, faceI)
+        {
+            bits.set(faceI, rndGen.integer(0,3));
+        }
+
+        labelList faceValues(mesh.nFaces());
+        forAll(bits, faceI)
+        {
+            faceValues[faceI] = bits.get(faceI);
+        }
+
+        PackedList<3> maxBits(bits);
+        labelList maxFaceValues(faceValues);
+
+        syncTools::syncFaceList(mesh, bits, minEqOp<unsigned int>());
+        syncTools::syncFaceList(mesh, faceValues, minEqOp<label>(), false);
+
+        syncTools::syncFaceList(mesh, maxBits, maxEqOp<unsigned int>());
+        syncTools::syncFaceList(mesh, maxFaceValues, maxEqOp<label>(), false);
+
+        forAll(bits, faceI)
+        {
+            if
+            (
+                faceValues[faceI] != label(bits.get(faceI))
+             || maxFaceValues[faceI] != label(maxBits.get(faceI))
+            )
+            {
+                FatalErrorIn("testPackedList()")
+                    << "face:" << faceI
+                    << " minlabel:" << faceValues[faceI]
+                    << " minbits:" << bits.get(faceI)
+                    << " maxLabel:" << maxFaceValues[faceI]
+                    << " maxBits:" << maxBits.get(faceI)
+                    << exit(FatalError);
+            }
+        }
+    }
+}
+
+
+void testSparseData(const polyMesh& mesh, Random& rndGen)
+{
+    Info<< nl << "Testing Map synchronisation." << endl;
+
+    primitivePatch allBoundary
+    (
+        SubList<face>
+        (
+            mesh.faces(),
+            mesh.nFaces()-mesh.nInternalFaces(),
+            mesh.nInternalFaces()
+        ),
+        mesh.points()
+    );
+    const pointField& localPoints = allBoundary.localPoints();
+
+    const point greatPoint(GREAT, GREAT, GREAT);
+
+
+    // Point data
+    // ~~~~~~~~~~
+
+    {
+        // Create some data. Use slightly perturbed positions.
+        Map<vector> sparseData;
+        pointField fullData(mesh.nPoints(), greatPoint);
+
+        forAll(localPoints, i)
+        {
+            const point pt = localPoints[i] + 1E-4*rndGen.vector01();
+
+            label meshPointI = allBoundary.meshPoints()[i];
+
+            sparseData.insert(meshPointI, pt);
+            fullData[meshPointI] = pt;
+        }    
+
+        //Pout<< "sparseData:" << sparseData << endl;
+
+        syncTools::syncPointMap
+        (
+            mesh,
+            sparseData,
+            minEqOp<vector>(),
+            true                    // apply separation
+        );
+        syncTools::syncPointList
+        (
+            mesh,
+            fullData,
+            minEqOp<vector>(),
+            greatPoint,
+            true                    // apply separation
+        );
+
+        // Compare.
+        // 1. Is all fullData also present in sparseData and same value
+        forAll(fullData, meshPointI)
+        {
+            const point& fullPt = fullData[meshPointI];
+
+            if (fullPt != greatPoint)
+            {
+                const point& sparsePt = sparseData[meshPointI];
+
+                if (fullPt != sparsePt)
+                {
+                    FatalErrorIn("testSparseData()")
+                        << "point:" << meshPointI
+                        << " full:" << fullPt
+                        << " sparse:" << sparsePt
+                        << exit(FatalError);
+                }
+            }
+        }
+
+        // 2. Does sparseData contain more?
+        forAllConstIter(Map<vector>, sparseData, iter)
+        {
+            const point& sparsePt = iter();
+            label meshPointI = iter.key();
+            const point& fullPt = fullData[meshPointI];
+
+            if (fullPt != sparsePt)
+            {
+                FatalErrorIn("testSparseData()")
+                    << "point:" << meshPointI
+                    << " full:" << fullPt
+                    << " sparse:" << sparsePt
+                    << exit(FatalError);
+            }
+        }
+    }
+
+
+    // Edge data
+    // ~~~~~~~~~
+
+    {
+        // Create some data. Use slightly perturbed positions.
+        EdgeMap<vector> sparseData;
+        pointField fullData(mesh.nEdges(), greatPoint);
+
+        const edgeList& edges = allBoundary.edges();
+        const labelList meshEdges = allBoundary.meshEdges
+        (
+            mesh.edges(),
+            mesh.pointEdges()
+        );
+
+        forAll(edges, i)
+        {
+            const edge& e = edges[i];
+
+            const point pt = e.centre(localPoints) + 1E-4*rndGen.vector01();
+
+            label meshEdgeI = meshEdges[i];
+
+            sparseData.insert(mesh.edges()[meshEdgeI], pt);
+            fullData[meshEdgeI] = pt;
+        }    
+
+        //Pout<< "sparseData:" << sparseData << endl;
+
+        syncTools::syncEdgeMap
+        (
+            mesh,
+            sparseData,
+            minEqOp<vector>(),
+            true
+        );
+        syncTools::syncEdgeList
+        (
+            mesh,
+            fullData,
+            minEqOp<vector>(),
+            greatPoint,
+            true
+        );
+
+        // Compare.
+        // 1. Is all fullData also present in sparseData and same value
+        forAll(fullData, meshEdgeI)
+        {
+            const point& fullPt = fullData[meshEdgeI];
+
+            if (fullPt != greatPoint)
+            {
+                const point& sparsePt = sparseData[mesh.edges()[meshEdgeI]];
+
+                if (fullPt != sparsePt)
+                {
+                    FatalErrorIn("testSparseData()")
+                        << "edge:" << meshEdgeI
+                        << " points:" << mesh.edges()[meshEdgeI]
+                        << " full:" << fullPt
+                        << " sparse:" << sparsePt
+                        << exit(FatalError);
+                }
+            }
+        }
+
+        // 2. Does sparseData contain more?
+        forAll(fullData, meshEdgeI)
+        {
+            const edge& e = mesh.edges()[meshEdgeI];
+
+            EdgeMap<vector>::const_iterator iter = sparseData.find(e);
+
+            if (iter != sparseData.end())
+            {
+                const point& sparsePt = iter();
+                const point& fullPt = fullData[meshEdgeI];
+
+                if (fullPt != sparsePt)
+                {
+                    FatalErrorIn("testSparseData()")
+                        << "Extra edge:" << meshEdgeI
+                        << " points:" << mesh.edges()[meshEdgeI]
+                        << " full:" << fullPt
+                        << " sparse:" << sparsePt
+                        << exit(FatalError);
+                }
+            }
+        }
+    }
+}
+
+
+void testPointSync(const polyMesh& mesh, Random& rndGen)
+{
+    Info<< nl << "Testing point-wise data synchronisation." << endl;
+
+    const point greatPoint(GREAT, GREAT, GREAT);
+
+    // Test position.
+
+    {
+        WarningIn("testPointSync()")
+            << "Position test only correct for cases without cyclics"
+            << " with shared points." << endl;
+
+        pointField syncedPoints(mesh.points());
+        syncTools::syncPointList
+        (
+            mesh,
+            syncedPoints,
+            minEqOp<point>(),
+            greatPoint,
+            true
+        );
+
+        forAll(syncedPoints, pointI)
+        {
+            if (mag(syncedPoints[pointI] - mesh.points()[pointI]) > SMALL)
+            {
+                FatalErrorIn("testPointSync()")
+                    << "Point " << pointI
+                    << " original location " << mesh.points()[pointI]
+                    << " synced location " << syncedPoints[pointI]
+                    << exit(FatalError);
+            }
+        }
+    }
+
+    // Test masterPoints
+
+    {
+        labelList nMasters(mesh.nPoints(), 0);
+
+        PackedBoolList isMasterPoint(syncTools::getMasterPoints(mesh));
+
+        forAll(isMasterPoint, pointI)
+        {
+            if (isMasterPoint[pointI])
+            {
+                nMasters[pointI] = 1;
+            }
+        }
+
+        syncTools::syncPointList
+        (
+            mesh,
+            nMasters,
+            plusEqOp<label>(),
+            0,
+            false
+        );
+
+        forAll(nMasters, pointI)
+        {
+            if (nMasters[pointI] != 1)
+            {
+                //FatalErrorIn("testPointSync()")
+                WarningIn("testPointSync()")
+                    << "Point " << pointI
+                    << " original location " << mesh.points()[pointI]
+                    << " has " << nMasters[pointI]
+                    << " masters."
+                    //<< exit(FatalError);
+                    << endl;
+            }
+        }
+    }
+}
+
+
+void testEdgeSync(const polyMesh& mesh, Random& rndGen)
+{
+    Info<< nl << "Testing edge-wise data synchronisation." << endl;
+
+    const edgeList& edges = mesh.edges();
+
+    const point greatPoint(GREAT, GREAT, GREAT);
+
+    // Test position.
+
+    {
+        WarningIn("testEdgeSync()")
+            << "Position test only correct for cases without cyclics"
+            << " with shared edges." << endl;
+
+        pointField syncedMids(edges.size());
+        forAll(syncedMids, edgeI)
+        {
+            syncedMids[edgeI] = edges[edgeI].centre(mesh.points());
+        }
+        syncTools::syncEdgeList
+        (
+            mesh,
+            syncedMids,
+            minEqOp<point>(),
+            greatPoint,
+            true
+        );
+
+        forAll(syncedMids, edgeI)
+        {
+            point eMid = edges[edgeI].centre(mesh.points());
+
+            if (mag(syncedMids[edgeI] - eMid) > SMALL)
+            {
+                FatalErrorIn("testEdgeSync()")
+                    << "Edge " << edgeI
+                    << " original midpoint " << eMid
+                    << " synced location " << syncedMids[edgeI]
+                    << exit(FatalError);
+            }
+        }
+    }
+
+    // Test masterEdges
+
+    {
+        labelList nMasters(edges.size(), 0);
+
+        PackedBoolList isMasterEdge(syncTools::getMasterEdges(mesh));
+
+        forAll(isMasterEdge, edgeI)
+        {
+            if (isMasterEdge[edgeI])
+            {
+                nMasters[edgeI] = 1;
+            }
+        }
+
+        syncTools::syncEdgeList
+        (
+            mesh,
+            nMasters,
+            plusEqOp<label>(),
+            0,
+            false
+        );
+
+        forAll(nMasters, edgeI)
+        {
+            if (nMasters[edgeI] != 1)
+            {
+                //FatalErrorIn("testEdgeSync()")
+                WarningIn("testEdgeSync()")
+                    << "Edge " << edgeI
+                    << " midpoint " << edges[edgeI].centre(mesh.points())
+                    << " has " << nMasters[edgeI]
+                    << " masters."
+                    //<< exit(FatalError);
+                    << endl;
+            }
+        }
+    }
+}
+
+
+void testFaceSync(const polyMesh& mesh, Random& rndGen)
+{
+    Info<< nl << "Testing face-wise data synchronisation." << endl;
+
+    // Test position.
+
+    {
+        pointField syncedFc(mesh.faceCentres());
+
+        syncTools::syncFaceList
+        (
+            mesh,
+            syncedFc,
+            maxEqOp<point>(),
+            true
+        );
+
+        forAll(syncedFc, faceI)
+        {
+            if (mag(syncedFc[faceI] - mesh.faceCentres()[faceI]) > SMALL)
+            {
+                FatalErrorIn("testFaceSync()")
+                    << "Face " << faceI
+                    << " original centre " << mesh.faceCentres()[faceI]
+                    << " synced centre " << syncedFc[faceI]
+                    << exit(FatalError);
+            }
+        }
+    }
+
+    // Test masterFaces
+
+    {
+        labelList nMasters(mesh.nFaces(), 0);
+
+        PackedBoolList isMasterFace(syncTools::getMasterFaces(mesh));
+
+        forAll(isMasterFace, faceI)
+        {
+            if (isMasterFace[faceI])
+            {
+                nMasters[faceI] = 1;
+            }
+        }
+
+        syncTools::syncFaceList
+        (
+            mesh,
+            nMasters,
+            plusEqOp<label>(),
+            false
+        );
+
+        forAll(nMasters, faceI)
+        {
+            if (nMasters[faceI] != 1)
+            {
+                FatalErrorIn("testFaceSync()")
+                    << "Face " << faceI
+                    << " centre " << mesh.faceCentres()[faceI]
+                    << " has " << nMasters[faceI]
+                    << " masters."
+                    << exit(FatalError);
+            }
+        }
+    }
+}
+
+
+// Main program:
+
+int main(int argc, char *argv[])
+{
+#   include "setRootCase.H"
+#   include "createTime.H"
+#   include "createPolyMesh.H"
+
+
+    Random rndGen(5341*(Pstream::myProcNo()+1));
+
+
+    // Face sync
+    testFaceSync(mesh, rndGen);
+
+    // Edge sync
+    testEdgeSync(mesh, rndGen);
+
+    // Point sync
+    testPointSync(mesh, rndGen);
+
+    // PackedList synchronisation
+    testPackedList(mesh, rndGen);
+
+    // Sparse synchronisation
+    testSparseData(mesh, rndGen);
+
+    Info<< "End\n" << endl;
+
+    return 0;
+}
+
+
+// ************************************************************************* //

applications/utilities/mesh/generation/snappyHexMesh/snappyHexMeshDict

@@ -180,6 +180,12 @@ castellatedMeshControls
     // NOTE: This point should never be on a face, always inside a cell, even
     // after refinement.
     locationInMesh (5 0.28 0.43);
+
+
+    // Whether any faceZones (as specified in the refinementSurfaces)
+    // are only on the boundary of corresponding cellZones or also allow
+    // free-standing zone faces. Not used if there are no faceZones.
+    allowFreeStandingZoneFaces true;
 }
 
 
@@ -274,6 +280,7 @@ addLayersControls
     maxThicknessToMedialRatio 0.3;
 
     // Angle used to pick up medial axis points
+    // Note: changed(corrected) w.r.t 16x! 90 degrees corresponds to 130 in 16x.
     minMedianAxisAngle 90;
 
     // Create buffer region for new layer terminations

src/Allwmake

@@ -28,6 +28,7 @@ wmake libso triSurface
 
 # Decomposition methods needed by meshTools
 wmake libso parallel/decompositionMethods
+wmake libso parallel/metisDecomp
 
 wmake libso meshTools
 wmake libso finiteVolume

src/OpenFOAM/meshes/polyMesh/globalMeshData/globalMeshData.C

@@ -32,6 +32,8 @@ License
 #include "demandDrivenData.H"
 #include "globalPoints.H"
 //#include "geomGlobalPoints.H"
+#include "polyMesh.H"
+#include "mapDistribute.H"
 #include "labelIOList.H"
 #include "PackedList.H"
 #include "mergePoints.H"
@@ -115,24 +117,17 @@ void Foam::globalMeshData::initProcAddr()
 // Given information about locally used edges allocate global shared edges.
 void Foam::globalMeshData::countSharedEdges
 (
-    const HashTable<labelList, edge, Hash<edge> >& procSharedEdges,
+    const EdgeMap<labelList>& procSharedEdges,
-    HashTable<label, edge, Hash<edge> >& globalShared,
+    EdgeMap<label>& globalShared,
     label& sharedEdgeI
 )
 {
     // Count occurrences of procSharedEdges in global shared edges table.
-    for
+    forAllConstIter(EdgeMap<labelList>, procSharedEdges, iter)
-    (
-        HashTable<labelList, edge, Hash<edge> >::const_iterator iter =
-            procSharedEdges.begin();
-        iter != procSharedEdges.end();
-        ++iter
-    )
     {
         const edge& e = iter.key();
 
-        HashTable<label, edge, Hash<edge> >::iterator globalFnd =
+        EdgeMap<label>::iterator globalFnd = globalShared.find(e);
-            globalShared.find(e);
 
         if (globalFnd == globalShared.end())
         {
@@ -189,10 +184,7 @@ void Foam::globalMeshData::calcSharedEdges() const
     // Find edges using shared points. Store correspondence to local edge
     // numbering. Note that multiple local edges can have the same shared
     // points! (for cyclics or separated processor patches)
-    HashTable<labelList, edge, Hash<edge> > localShared
+    EdgeMap<labelList> localShared(2*sharedPtAddr.size());
-    (
-        2*sharedPtAddr.size()
-    );
 
     const edgeList& edges = mesh_.edges();
 
@@ -218,7 +210,7 @@ void Foam::globalMeshData::calcSharedEdges() const
                     sharedPtAddr[e1Fnd()]
                 );
 
-                HashTable<labelList, edge, Hash<edge> >::iterator iter =
+                EdgeMap<labelList>::iterator iter =
                     localShared.find(sharedEdge);
 
                 if (iter == localShared.end())
@@ -249,7 +241,7 @@ void Foam::globalMeshData::calcSharedEdges() const
     // used). But then this only gets done once so not too bothered about the
     // extra global communication.
 
-    HashTable<label, edge, Hash<edge> > globalShared(nGlobalPoints());
+    EdgeMap<label> globalShared(nGlobalPoints());
 
     if (Pstream::master())
     {
@@ -275,10 +267,7 @@ void Foam::globalMeshData::calcSharedEdges() const
             {
                 // Receive the edges using shared points from the slave.
                 IPstream fromSlave(Pstream::blocking, slave);
-                HashTable<labelList, edge, Hash<edge> > procSharedEdges
+                EdgeMap<labelList> procSharedEdges(fromSlave);
-                (
-                    fromSlave
-                );
 
                 if (debug)
                 {
@@ -295,17 +284,11 @@ void Foam::globalMeshData::calcSharedEdges() const
         // These were only used once so are not proper shared edges.
         // Remove them.
         {
-            HashTable<label, edge, Hash<edge> > oldSharedEdges(globalShared);
+            EdgeMap<label> oldSharedEdges(globalShared);
 
             globalShared.clear();
 
-            for
+            forAllConstIter(EdgeMap<label>, oldSharedEdges, iter)
-            (
-                HashTable<label, edge, Hash<edge> >::const_iterator iter =
-                    oldSharedEdges.begin();
-                iter != oldSharedEdges.end();
-                ++iter
-            )
             {
                 if (iter() != -1)
                 {
@@ -361,18 +344,11 @@ void Foam::globalMeshData::calcSharedEdges() const
     DynamicList<label> dynSharedEdgeLabels(globalShared.size());
     DynamicList<label> dynSharedEdgeAddr(globalShared.size());
 
-    for
+    forAllConstIter(EdgeMap<labelList>, localShared, iter)
-    (
-        HashTable<labelList, edge, Hash<edge> >::const_iterator iter =
-            localShared.begin();
-        iter != localShared.end();
-        ++iter
-    )
     {
         const edge& e = iter.key();
 
-        HashTable<label, edge, Hash<edge> >::const_iterator edgeFnd =
+        EdgeMap<label>::const_iterator edgeFnd = globalShared.find(e);
-            globalShared.find(e);
 
         if (edgeFnd != globalShared.end())
         {
@@ -434,6 +410,557 @@ Foam::label Foam::globalMeshData::countCoincidentFaces
 }
 
 
+void Foam::globalMeshData::calcGlobalPointSlaves() const
+{
+    if (debug)
+    {
+        Pout<< "globalMeshData::calcGlobalPointSlaves() :"
+            << " calculating coupled master to slave point addressing."
+            << endl;
+    }
+
+    // Calculate connected points for master points
+    globalPoints globalData(mesh_, coupledPatch(), true);
+
+    const Map<label>& meshToProcPoint = globalData.meshToProcPoint();
+
+    // Create global numbering for coupled points
+    globalPointNumberingPtr_.reset
+    (
+        new globalIndex(globalData.globalIndices())
+    );
+    const globalIndex& globalIndices = globalPointNumberingPtr_();
+
+    // Create master to slave addressing. Empty for slave points.
+    globalPointSlavesPtr_.reset
+    (
+        new labelListList(coupledPatch().nPoints())
+    );
+    labelListList& globalPointSlaves = globalPointSlavesPtr_();
+
+    forAllConstIter(Map<label>, meshToProcPoint, iter)
+    {
+        label localPointI = iter.key();
+        const labelList& pPoints = globalData.procPoints()[iter()];
+
+        // Am I master?
+        if
+        (
+            globalIndices.isLocal(pPoints[0])
+         && globalIndices.toLocal(pPoints[0]) == localPointI
+        )
+        {
+            labelList& slaves = globalPointSlaves[localPointI];
+            slaves.setSize(pPoints.size()-1);
+            for (label i = 1; i < pPoints.size(); i++)
+            {
+                slaves[i-1] = pPoints[i];
+            }
+        }
+    }
+
+    // Create schedule to get information from slaves onto master
+
+    // Construct compact numbering and distribution map.
+    // Changes globalPointSlaves to be indices into compact data
+
+    List<Map<label> > compactMap(Pstream::nProcs());
+    globalPointSlavesMapPtr_.reset
+    (
+        new mapDistribute
+        (
+            globalIndices,
+            globalPointSlaves,
+            compactMap
+        )
+    );
+
+    if (debug)
+    {
+        Pout<< "globalMeshData::calcGlobalPointSlaves() :"
+            << " coupled points:" << coupledPatch().nPoints()
+            << " additional remote points:"
+            <<  globalPointSlavesMapPtr_().constructSize()
+              - coupledPatch().nPoints()
+            << endl;
+    }
+}
+
+
+void Foam::globalMeshData::calcGlobalEdgeSlaves() const
+{
+    if (debug)
+    {
+        Pout<< "globalMeshData::calcGlobalEdgeSlaves() :"
+            << " calculating coupled master to slave edge addressing."
+            << endl;
+    }
+
+    const labelListList& globalPointSlaves = this->globalPointSlaves();
+    const mapDistribute& globalPointSlavesMap = this->globalPointSlavesMap();
+
+    // - Send across connected edges (in global edge addressing)
+    // - Check on receiving side whether edge has same slave edge
+    //   on both endpoints.
+
+    // Create global numbering for coupled edges
+    globalEdgeNumberingPtr_.reset
+    (
+        new globalIndex(coupledPatch().nEdges())
+    );
+    const globalIndex& globalIndices = globalEdgeNumberingPtr_();
+
+    // Coupled point to global coupled edges.
+    labelListList globalPointEdges(globalPointSlavesMap.constructSize());
+
+    // Create local version
+    const labelListList& pointEdges = coupledPatch().pointEdges();
+    forAll(pointEdges, pointI)
+    {
+        const labelList& pEdges = pointEdges[pointI];
+        labelList& globalPEdges = globalPointEdges[pointI];
+        globalPEdges.setSize(pEdges.size());
+        forAll(pEdges, i)
+        {
+            globalPEdges[i] = globalIndices.toGlobal(pEdges[i]);
+        }
+    }
+
+    // Pull slave data to master
+    globalPointSlavesMap.distribute(globalPointEdges);
+
+    // Now check on master if any of my edges are also on slave.
+    // This assumes that if slaves have a coupled edge it is also on
+    // the master (otherwise the mesh would be illegal anyway)
+
+    labelHashSet pointEdgeSet;
+
+    const edgeList& edges = coupledPatch().edges();
+
+    // Create master to slave addressing. Empty for slave edges.
+    globalEdgeSlavesPtr_.reset(new labelListList(edges.size()));
+    labelListList& globalEdgeSlaves = globalEdgeSlavesPtr_();
+
+    forAll(edges, edgeI)
+    {
+        const edge& e = edges[edgeI];
+        const labelList& slaves0 = globalPointSlaves[e[0]];
+        const labelList& slaves1 = globalPointSlaves[e[1]];
+
+        // Check for edges that are in both slaves0 and slaves1.
+        pointEdgeSet.clear();
+        forAll(slaves0, i)
+        {
+            const labelList& connectedEdges = globalPointEdges[slaves0[i]];
+            pointEdgeSet.insert(connectedEdges);
+        }
+        forAll(slaves1, i)
+        {
+            const labelList& connectedEdges = globalPointEdges[slaves1[i]];
+
+            forAll(connectedEdges, j)
+            {
+                label globalEdgeI = connectedEdges[j];
+
+                if (pointEdgeSet.found(globalEdgeI))
+                {
+                    // Found slave edge.
+                    label sz = globalEdgeSlaves[edgeI].size();
+                    globalEdgeSlaves[edgeI].setSize(sz+1);
+                    globalEdgeSlaves[edgeI][sz] = globalEdgeI;
+                }
+            }
+        }
+    }
+
+
+    // Construct map
+    List<Map<label> > compactMap(Pstream::nProcs());
+    globalEdgeSlavesMapPtr_.reset
+    (
+        new mapDistribute
+        (
+            globalIndices,
+            globalEdgeSlaves,
+            compactMap
+        )
+    );
+
+    if (debug)
+    {
+        Pout<< "globalMeshData::calcGlobalEdgeSlaves() :"
+            << " coupled edge:" << edges.size()
+            << " additional remote edges:"
+            << globalEdgeSlavesMapPtr_().constructSize() - edges.size()
+            << endl;
+    }
+}
+
+
+// Calculate uncoupled boundary faces (without calculating
+// primitiveMesh::pointFaces())
+void Foam::globalMeshData::calcPointBoundaryFaces
+(
+    labelListList& pointBoundaryFaces
+) const
+{
+    const polyBoundaryMesh& bMesh = mesh_.boundaryMesh();
+    const Map<label>& meshPointMap = coupledPatch().meshPointMap();
+
+    // 1. Count
+
+    labelList nPointFaces(coupledPatch().nPoints(), 0);
+
+    forAll(bMesh, patchI)
+    {
+        const polyPatch& pp = bMesh[patchI];
+
+        if (!pp.coupled())
+        {
+            forAll(pp, i)
+            {
+                const face& f = pp[i];
+
+                forAll(f, fp)
+                {
+                    Map<label>::const_iterator iter = meshPointMap.find(f[fp]);
+                    if (iter != meshPointMap.end())
+                    {
+                        nPointFaces[iter()]++;
+                    }
+                }
+            }
+        }
+    }
+
+
+    // 2. Size
+
+    pointBoundaryFaces.setSize(coupledPatch().nPoints());
+    forAll(nPointFaces, pointI)
+    {
+        pointBoundaryFaces[pointI].setSize(nPointFaces[pointI]);
+    }
+    nPointFaces = 0;
+
+
+    // 3. Fill
+
+    forAll(bMesh, patchI)
+    {
+        const polyPatch& pp = bMesh[patchI];
+
+        if (!pp.coupled())
+        {
+            forAll(pp, i)
+            {
+                const face& f = pp[i];
+                forAll(f, fp)
+                {
+                    Map<label>::const_iterator iter = meshPointMap.find(f[fp]);
+                    if (iter != meshPointMap.end())
+                    {
+                        label bFaceI = pp.start() + i - mesh_.nInternalFaces();
+                        pointBoundaryFaces[iter()][nPointFaces[iter()]++] =
+                            bFaceI;
+                    }
+                }
+            }
+        }
+    }
+}
+
+void Foam::globalMeshData::calcGlobalPointBoundaryFaces() const
+{
+    if (debug)
+    {
+        Pout<< "globalMeshData::calcGlobalPointBoundaryFaces() :"
+            << " calculating coupled point to boundary face addressing."
+            << endl;
+    }
+
+    // Construct local point to (uncoupled)boundaryfaces.
+    labelListList pointBoundaryFaces;
+    calcPointBoundaryFaces(pointBoundaryFaces);
+
+
+    // Global indices for boundary faces
+    globalBoundaryFaceNumberingPtr_.reset
+    (
+        new globalIndex(mesh_.nFaces()-mesh_.nInternalFaces())
+    );
+    globalIndex& globalIndices = globalBoundaryFaceNumberingPtr_();
+
+
+    // Convert local boundary faces to global numbering
+    globalPointBoundaryFacesPtr_.reset
+    (
+        new labelListList(globalPointSlavesMap().constructSize())
+    );
+    labelListList& globalPointBoundaryFaces = globalPointBoundaryFacesPtr_();
+
+    forAll(pointBoundaryFaces, pointI)
+    {
+        const labelList& bFaces = pointBoundaryFaces[pointI];
+        labelList& globalFaces = globalPointBoundaryFaces[pointI];
+        globalFaces.setSize(bFaces.size());
+        forAll(bFaces, i)
+        {
+            globalFaces[i] = globalIndices.toGlobal(bFaces[i]);
+        }
+    }
+
+
+    // Pull slave pointBoundaryFaces to master
+    globalPointSlavesMap().distribute(globalPointBoundaryFaces);
+
+
+    // Merge slave labels into master globalPointBoundaryFaces
+    const labelListList& pointSlaves = globalPointSlaves();
+
+    forAll(pointSlaves, pointI)
+    {
+        const labelList& slaves = pointSlaves[pointI];
+
+        if (slaves.size() > 0)
+        {
+            labelList& myBFaces = globalPointBoundaryFaces[pointI];
+
+            forAll(slaves, i)
+            {
+                const labelList& slaveBFaces =
+                    globalPointBoundaryFaces[slaves[i]];
+
+                // Add all slaveBFaces. Note that need to check for
+                // uniqueness only in case of cyclics.
+
+                label sz = myBFaces.size();
+                myBFaces.setSize(sz+slaveBFaces.size());
+                forAll(slaveBFaces, j)
+                {
+                    label slave = slaveBFaces[j];
+                    if (findIndex(SubList<label>(myBFaces, sz), slave) == -1)
+                    {
+                        myBFaces[sz++] = slave;
+                    }
+                }
+                myBFaces.setSize(sz);
+            }
+        }
+    }
+
+
+    // Copy merged boundaryFaces back from master into slave slot
+    forAll(pointSlaves, pointI)
+    {
+        const labelList& bFaces = globalPointBoundaryFaces[pointI];
+        const labelList& slaves = pointSlaves[pointI];
+
+        forAll(slaves, i)
+        {
+            globalPointBoundaryFaces[slaves[i]] = bFaces;
+        }
+    }
+
+
+    // Sync back to slaves.
+    globalPointSlavesMap().reverseDistribute
+    (
+        coupledPatch().nPoints(),
+        globalPointBoundaryFaces
+    );
+
+
+    // Construct a map to get the face data directly
+    List<Map<label> > compactMap(Pstream::nProcs());
+    globalPointBoundaryFacesMapPtr_.reset
+    (
+        new mapDistribute
+        (
+            globalIndices,
+            globalPointBoundaryFaces,
+            compactMap
+        )
+    );
+
+    if (debug)
+    {
+        Pout<< "globalMeshData::calcGlobalPointBoundaryFaces() :"
+            << " coupled points:" << coupledPatch().nPoints()
+            << " local boundary faces:" <<  globalIndices.localSize()
+            << " additional remote faces:"
+            <<  globalPointBoundaryFacesMapPtr_().constructSize()
+              - globalIndices.localSize()
+            << endl;
+    }
+}
+
+
+void Foam::globalMeshData::calcGlobalPointBoundaryCells() const
+{
+    if (debug)
+    {
+        Pout<< "globalMeshData::calcGlobalPointBoundaryCells() :"
+            << " calculating coupled point to boundary cell addressing."
+            << endl;
+    }
+
+    // Create map of boundary cells and point-cell addressing
+    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+    label bCellI = 0;
+    Map<label> meshCellMap(4*coupledPatch().nPoints());
+    DynamicList<label> cellMap(meshCellMap.size());
+
+    // Create addressing for point to boundary cells (local)
+    labelListList pointBoundaryCells(coupledPatch().nPoints());
+
+    forAll(coupledPatch().meshPoints(), pointI)
+    {
+        label meshPointI = coupledPatch().meshPoints()[pointI];
+        const labelList& pCells = mesh_.pointCells(meshPointI);
+
+        labelList& bCells = pointBoundaryCells[pointI];
+        bCells.setSize(pCells.size());
+
+        forAll(pCells, i)
+        {
+            label cellI = pCells[i];
+            Map<label>::iterator fnd = meshCellMap.find(cellI);
+
+            if (fnd != meshCellMap.end())
+            {
+                bCells[i] = fnd();
+            }
+            else
+            {
+                meshCellMap.insert(cellI, bCellI);
+                cellMap.append(cellI);
+                bCells[i] = bCellI;
+                bCellI++;
+            }
+        }
+    }
+
+
+    boundaryCellsPtr_.reset(new labelList());
+    labelList& boundaryCells = boundaryCellsPtr_();
+    boundaryCells.transfer(cellMap.shrink());
+
+
+    // Convert point-cells to global point numbers
+    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+    globalBoundaryCellNumberingPtr_.reset
+    (
+        new globalIndex(boundaryCells.size())
+    );
+    globalIndex& globalIndices = globalBoundaryCellNumberingPtr_();
+
+
+    globalPointBoundaryCellsPtr_.reset
+    (
+        new labelListList(globalPointSlavesMap().constructSize())
+    );
+    labelListList& globalPointBoundaryCells = globalPointBoundaryCellsPtr_();
+
+    forAll(pointBoundaryCells, pointI)
+    {
+        const labelList& pCells = pointBoundaryCells[pointI];
+        labelList& globalCells = globalPointBoundaryCells[pointI];
+        globalCells.setSize(pCells.size());
+        forAll(pCells, i)
+        {
+            globalCells[i] = globalIndices.toGlobal(pCells[i]);
+        }
+    }
+
+
+    // Pull slave pointBoundaryCells to master
+    globalPointSlavesMap().distribute(globalPointBoundaryCells);
+
+
+    // Merge slave labels into master globalPointBoundaryCells
+    const labelListList& pointSlaves = globalPointSlaves();
+
+    forAll(pointSlaves, pointI)
+    {
+        const labelList& slaves = pointSlaves[pointI];
+
+        if (slaves.size() > 0)
+        {
+            labelList& myBCells = globalPointBoundaryCells[pointI];
+
+            forAll(slaves, i)
+            {
+                const labelList& slaveBCells =
+                    globalPointBoundaryCells[slaves[i]];
+
+                // Add all slaveBCells. Note that need to check for
+                // uniqueness only in case of cyclics.
+
+                label sz = myBCells.size();
+                myBCells.setSize(sz+slaveBCells.size());
+                forAll(slaveBCells, j)
+                {
+                    label slave = slaveBCells[j];
+                    if (findIndex(SubList<label>(myBCells, sz), slave) == -1)
+                    {
+                        myBCells[sz++] = slave;
+                    }
+                }
+                myBCells.setSize(sz);
+            }
+        }
+    }
+
+
+    // Copy merged boundaryCells back from master into slave slot
+    forAll(pointSlaves, pointI)
+    {
+        const labelList& bCells = globalPointBoundaryCells[pointI];
+        const labelList& slaves = pointSlaves[pointI];
+
+        forAll(slaves, i)
+        {
+            globalPointBoundaryCells[slaves[i]] = bCells;
+        }
+    }
+
+
+    // Sync back to slaves.
+    globalPointSlavesMap().reverseDistribute
+    (
+        coupledPatch().nPoints(),
+        globalPointBoundaryCells
+    );
+
+
+    // Construct a map to get the cell data directly
+    List<Map<label> > compactMap(Pstream::nProcs());
+    globalPointBoundaryCellsMapPtr_.reset
+    (
+        new mapDistribute
+        (
+            globalIndices,
+            globalPointBoundaryCells,
+            compactMap
+        )
+    );
+
+    if (debug)
+    {
+        Pout<< "globalMeshData::calcGlobalPointBoundaryCells() :"
+            << " coupled points:" << coupledPatch().nPoints()
+            << " local boundary cells:" <<  globalIndices.localSize()
+            << " additional remote cells:"
+            <<  globalPointBoundaryCellsMapPtr_().constructSize()
+              - globalIndices.localSize()
+            << endl;
+    }
+}
+
+
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
 // Construct from polyMesh
@@ -511,6 +1038,25 @@ void Foam::globalMeshData::clearOut()
     nGlobalPoints_ = -1;
     deleteDemandDrivenData(sharedEdgeLabelsPtr_);
     deleteDemandDrivenData(sharedEdgeAddrPtr_);
+
+    coupledPatchPtr_.clear();
+    // Point
+    globalPointNumberingPtr_.clear();
+    globalPointSlavesPtr_.clear();
+    globalPointSlavesMapPtr_.clear();
+    // Edge
+    globalEdgeNumberingPtr_.clear();
+    globalEdgeSlavesPtr_.clear();
+    globalEdgeSlavesMapPtr_.clear();
+    // Face
+    globalBoundaryFaceNumberingPtr_.clear();
+    globalPointBoundaryFacesPtr_.clear();
+    globalPointBoundaryFacesMapPtr_.clear();
+    // Cell
+    boundaryCellsPtr_.clear();
+    globalBoundaryCellNumberingPtr_.clear();
+    globalPointBoundaryCellsPtr_.clear();
+    globalPointBoundaryCellsMapPtr_.clear();
 }
 
 
@@ -709,6 +1255,203 @@ const Foam::labelList& Foam::globalMeshData::sharedEdgeAddr() const
 }
 
 
+const Foam::indirectPrimitivePatch& Foam::globalMeshData::coupledPatch() const
+{
+    if (!coupledPatchPtr_.valid())
+    {
+        const polyBoundaryMesh& bMesh = mesh_.boundaryMesh();
+
+        label nCoupled = 0;
+
+        forAll(bMesh, patchI)
+        {
+            const polyPatch& pp = bMesh[patchI];
+
+            if (pp.coupled())
+            {
+                nCoupled += pp.size();
+            }
+        }
+        labelList coupledFaces(nCoupled);
+        nCoupled = 0;
+
+        forAll(bMesh, patchI)
+        {
+            const polyPatch& pp = bMesh[patchI];
+
+            if (pp.coupled())
+            {
+                label faceI = pp.start();
+
+                forAll(pp, i)
+                {
+                    coupledFaces[nCoupled++] = faceI++;
+                }
+            }
+        }
+
+        coupledPatchPtr_.reset
+        (
+            new indirectPrimitivePatch
+            (
+                IndirectList<face>
+                (
+                    mesh_.faces(),
+                    coupledFaces
+                ),
+                mesh_.points()
+            )
+        );
+
+        if (debug)
+        {
+            Pout<< "globalMeshData::coupledPatch() :"
+                << " constructed  coupled faces patch:"
+                << "  faces:" << coupledPatchPtr_().size()
+                << "  points:" << coupledPatchPtr_().nPoints()
+                << endl;
+        }
+    }
+    return coupledPatchPtr_();
+}
+
+
+const Foam::globalIndex& Foam::globalMeshData::globalPointNumbering() const
+{
+    if (!globalPointNumberingPtr_.valid())
+    {
+        calcGlobalPointSlaves();
+    }
+    return globalPointNumberingPtr_();
+}
+
+
+const Foam::labelListList& Foam::globalMeshData::globalPointSlaves() const
+{
+    if (!globalPointSlavesPtr_.valid())
+    {
+        calcGlobalPointSlaves();
+    }
+    return globalPointSlavesPtr_();
+}
+
+
+const Foam::mapDistribute& Foam::globalMeshData::globalPointSlavesMap() const
+{
+    if (!globalPointSlavesMapPtr_.valid())
+    {
+        calcGlobalPointSlaves();
+    }
+    return globalPointSlavesMapPtr_();
+}
+
+
+const Foam::globalIndex& Foam::globalMeshData::globalEdgeNumbering() const
+{
+    if (!globalEdgeNumberingPtr_.valid())
+    {
+        calcGlobalEdgeSlaves();
+    }
+    return globalEdgeNumberingPtr_();
+}
+
+
+const Foam::labelListList& Foam::globalMeshData::globalEdgeSlaves() const
+{
+    if (!globalEdgeSlavesPtr_.valid())
+    {
+        calcGlobalEdgeSlaves();
+    }
+    return globalEdgeSlavesPtr_();
+}
+
+
+const Foam::mapDistribute& Foam::globalMeshData::globalEdgeSlavesMap() const
+{
+    if (!globalEdgeSlavesMapPtr_.valid())
+    {
+        calcGlobalEdgeSlaves();
+    }
+    return globalEdgeSlavesMapPtr_();
+}
+
+
+const Foam::globalIndex& Foam::globalMeshData::globalBoundaryFaceNumbering()
+const
+{
+    if (!globalBoundaryFaceNumberingPtr_.valid())
+    {
+        calcGlobalPointBoundaryFaces();
+    }
+    return globalBoundaryFaceNumberingPtr_();
+}
+
+
+const Foam::labelListList& Foam::globalMeshData::globalPointBoundaryFaces()
+const
+{
+    if (!globalPointBoundaryFacesPtr_.valid())
+    {
+        calcGlobalPointBoundaryFaces();
+    }
+    return globalPointBoundaryFacesPtr_();
+}
+
+
+const Foam::mapDistribute& Foam::globalMeshData::globalPointBoundaryFacesMap()
+const
+{
+    if (!globalPointBoundaryFacesMapPtr_.valid())
+    {
+        calcGlobalPointBoundaryFaces();
+    }
+    return globalPointBoundaryFacesMapPtr_();
+}
+
+
+const Foam::labelList& Foam::globalMeshData::boundaryCells() const
+{
+    if (!boundaryCellsPtr_.valid())
+    {
+        calcGlobalPointBoundaryCells();
+    }
+    return boundaryCellsPtr_();
+}
+
+
+const Foam::globalIndex& Foam::globalMeshData::globalBoundaryCellNumbering()
+const
+{
+    if (!globalBoundaryCellNumberingPtr_.valid())
+    {
+        calcGlobalPointBoundaryCells();
+    }
+    return globalBoundaryCellNumberingPtr_();
+}
+
+
+const Foam::labelListList& Foam::globalMeshData::globalPointBoundaryCells()
+const
+{
+    if (!globalPointBoundaryCellsPtr_.valid())
+    {
+        calcGlobalPointBoundaryCells();
+    }
+    return globalPointBoundaryCellsPtr_();
+}
+
+
+const Foam::mapDistribute& Foam::globalMeshData::globalPointBoundaryCellsMap()
+const
+{
+    if (!globalPointBoundaryCellsMapPtr_.valid())
+    {
+        calcGlobalPointBoundaryCells();
+    }
+    return globalPointBoundaryCellsMapPtr_();
+}
+
+
 void Foam::globalMeshData::movePoints(const pointField& newPoints)
 {
     // Topology does not change and we don't store any geometry so nothing
@@ -740,7 +1483,7 @@ void Foam::globalMeshData::updateMesh()
     // Option 1. Topological
     {
         // Calculate all shared points. This does all the hard work.
-        globalPoints parallelPoints(mesh_);
+        globalPoints parallelPoints(mesh_, false);
 
         // Copy data out.
         nGlobalPoints_ = parallelPoints.nGlobalPoints();

src/OpenFOAM/meshes/polyMesh/globalMeshData/globalMeshData.H

@@ -74,10 +74,13 @@ SourceFiles
 #ifndef globalMeshData_H
 #define globalMeshData_H
 
-#include "polyMesh.H"
+//#include "polyMesh.H"
 #include "Switch.H"
 #include "processorTopology.H"
 #include "labelPair.H"
+#include "indirectPrimitivePatch.H"
+#include "boundBox.H"
+#include "IOobject.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -88,7 +91,10 @@ namespace Foam
 
 class globalMeshData;
 Ostream& operator<<(Ostream&, const globalMeshData&);
-
+class globalIndex;
+class polyMesh;
+class mapDistribute;
+template<class T> class EdgeMap;
 
 /*---------------------------------------------------------------------------*\
                            Class globalMeshData Declaration
@@ -194,6 +200,39 @@ class globalMeshData
             mutable labelList* sharedEdgeAddrPtr_;
 
 
+        // Coupled point addressing
+        // This is addressing from coupled point to coupled points,faces,cells
+        // This is a full schedule so includes points only used by two
+        // coupled patches.
+
+            mutable autoPtr<indirectPrimitivePatch> coupledPatchPtr_;
+
+            // Coupled point to coupled points
+
+                mutable autoPtr<globalIndex> globalPointNumberingPtr_;
+                mutable autoPtr<labelListList> globalPointSlavesPtr_;
+                mutable autoPtr<mapDistribute> globalPointSlavesMapPtr_;
+
+            // Coupled edge to coupled edges
+
+                mutable autoPtr<globalIndex> globalEdgeNumberingPtr_;
+                mutable autoPtr<labelListList> globalEdgeSlavesPtr_;
+                mutable autoPtr<mapDistribute> globalEdgeSlavesMapPtr_;
+
+            // Coupled point to boundary faces
+
+                mutable autoPtr<globalIndex> globalBoundaryFaceNumberingPtr_;
+                mutable autoPtr<labelListList> globalPointBoundaryFacesPtr_;
+                mutable autoPtr<mapDistribute> globalPointBoundaryFacesMapPtr_;
+
+            // Coupled point to boundary cells
+
+                mutable autoPtr<labelList> boundaryCellsPtr_;
+                mutable autoPtr<globalIndex> globalBoundaryCellNumberingPtr_;
+                mutable autoPtr<labelListList> globalPointBoundaryCellsPtr_;
+                mutable autoPtr<mapDistribute> globalPointBoundaryCellsMapPtr_;
+
+
     // Private Member Functions
 
         //- Set up processor patch addressing
@@ -202,8 +241,8 @@ class globalMeshData
         //- Helper function for shared edge addressing
         static void countSharedEdges
         (
-            const HashTable<labelList, edge, Hash<edge> >& procSharedEdges,
+            const EdgeMap<labelList>&,
-            HashTable<label, edge, Hash<edge> >&,
+            EdgeMap<label>&,
             label&
         );
 
@@ -217,6 +256,22 @@ class globalMeshData
             const vectorField& separationDist
         );
 
+        //- Calculate global point addressing.
+        void calcGlobalPointSlaves() const;
+
+        //- Calculate global edge addressing.
+        void calcGlobalEdgeSlaves() const;
+
+        //- Calculate coupled point to uncoupled boundary faces. Local only.
+        void calcPointBoundaryFaces(labelListList& pointBoundaryFaces) const;
+
+        //- Calculate global point to global boundary face addressing.
+        void calcGlobalPointBoundaryFaces() const;
+
+        //- Calculate global point to global boundary cell addressing.
+        void calcGlobalPointBoundaryCells() const;
+
+
         //- Disallow default bitwise copy construct
         globalMeshData(const globalMeshData&);
 
@@ -388,6 +443,47 @@ public:
             const labelList& sharedEdgeAddr() const;
 
 
+
+        // Global master - slave point communication
+
+            //- Return patch of all coupled faces
+            const indirectPrimitivePatch& coupledPatch() const;
+
+            // Coupled point to coupled points. Coupled points are points on
+            // any coupled patch.
+
+                //- Numbering of coupled points is according to coupledPatch.
+                const globalIndex& globalPointNumbering() const;
+                //- For every coupled point the indices into the field
+                //  distributed by below map.
+                const labelListList& globalPointSlaves() const;
+                const mapDistribute& globalPointSlavesMap() const;
+
+            // Coupled edge to coupled edges.
+
+                const globalIndex& globalEdgeNumbering() const;
+                const labelListList& globalEdgeSlaves() const;
+                const mapDistribute& globalEdgeSlavesMap() const;
+
+            // Coupled point to boundary faces. These are uncoupled boundary
+            // faces only but include empty patches.
+
+                //- Numbering of boundary faces is face-mesh.nInternalFaces()
+                const globalIndex& globalBoundaryFaceNumbering() const;
+                const labelListList& globalPointBoundaryFaces() const;
+                const mapDistribute& globalPointBoundaryFacesMap() const;
+
+            // Coupled point to boundary cell
+
+                //- From boundary cell to mesh cell
+                const labelList& boundaryCells() const;
+
+                //- Numbering of boundary cells is according to boundaryCells()
+                const globalIndex& globalBoundaryCellNumbering() const;
+                const labelListList& globalPointBoundaryCells() const;
+                const mapDistribute& globalPointBoundaryCellsMap() const;
+
+
         // Edit
 
             //- Update for moving points.

src/OpenFOAM/meshes/polyMesh/globalMeshData/globalPoints.H

@@ -29,9 +29,8 @@ Description
     Calculates points shared by more than two processor patches or cyclic
     patches.
 
-    Is used in globalMeshData. (this info is needed for point-edge
+    Is used in globalMeshData. (this info is needed for point/edge
-    communication where you do all but these shared points with patch to
+    communication where processor swaps are not enough to exchange data)
-    patch communication but need to do a reduce on these shared points)
 
     Works purely topological and using local communication only.
     Needs:
@@ -41,8 +40,8 @@ Description
       - f[0] ordering on patch faces to be ok.
 
     Works by constructing equivalence lists for all the points on processor
-    patches. These list are procPointList and give processor and meshPoint
+    patches. These list are in globalIndex numbering (so consecutively numbered
-    label on that processor.
+    per processor)
     E.g.
     @verbatim
           ((7 93)(4 731)(3 114))
@@ -85,6 +84,9 @@ Description
      endloop until nothing changes.
 
 
+    Note: the data held is either mesh point labels (construct from mesh only)
+    or patch point labels (construct from mesh and patch).
+
 SourceFiles
     globalPoints.C
 
@@ -95,11 +97,11 @@ SourceFiles
 
 #include "DynamicList.H"
 #include "Map.H"
-#include "labelList.H"
-#include "FixedList.H"
 #include "primitivePatch.H"
 #include "className.H"
 #include "edgeList.H"
+#include "globalIndex.H"
+#include "indirectPrimitivePatch.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -119,30 +121,29 @@ class globalPoints
 {
     // Private classes
 
-        //- Define procPointList as holding a list of meshPoint/processor labels
-        typedef FixedList<label, 2> procPoint;
-        typedef List<procPoint> procPointList;
-
     // Private data
 
         //- Mesh reference
         const polyMesh& mesh_;
 
+        //- Global numbering of points
+        globalIndex globalIndices_;
+
         //- Sum of points on processor patches (unfiltered, point on 2 patches
         //  counts as 2)
         const label nPatchPoints_;
 
         //- All points on boundaries and their corresponding connected points
         //  on other processors.
-        DynamicList<procPointList> procPoints_;
+        DynamicList<labelList> procPoints_;
 
-        //- Map from mesh point to index in procPoints
+        //- Map from mesh (or patch) point to index in procPoints
         Map<label> meshToProcPoint_;
 
         //- Shared points used by this processor (= global point number)
         labelList sharedPointAddr_;
 
-        //- My meshpoints corresponding to the shared points
+        //- My mesh(or patch) points corresponding to the shared points
         labelList sharedPointLabels_;
 
         //- Total number of shared points.
@@ -155,56 +156,108 @@ class globalPoints
         //  information is collected.
         static label countPatchPoints(const polyBoundaryMesh&);
 
+        ////- Get all faces on coupled patches
+        //static labelListl coupledFaces(const polyBoundaryMesh&);
+
         //- Add information about patchPointI in relative indices to send
         //  buffers (patchFaces, indexInFace etc.)
         static void addToSend
         (
             const primitivePatch&,
             const label patchPointI,
-            const procPointList&,
+            const labelList&,
             DynamicList<label>& patchFaces,
             DynamicList<label>& indexInFace,
-            DynamicList<procPointList>& allInfo
+            DynamicList<labelList>& allInfo
         );
 
         //- Merge info from neighbour into my data
         static bool mergeInfo
         (
-            const procPointList& nbrInfo,
+            const labelList& nbrInfo,
-            procPointList& myInfo
+            labelList& myInfo
+        );
+
+        //- From mesh point to 'local point'. Is the mesh point itself
+        //  if meshToPatchPoint is empty.
+        static label meshToLocalPoint
+        (
+            const Map<label>& meshToPatchPoint,
+            const label meshPointI
+        );
+
+        //- Opposite of meshToLocalPoint.
+        static label localToMeshPoint
+        (
+            const labelList& patchToMeshPoint,
+            const label localPointI
         );
 
         //- Store (and merge) info for meshPointI
-        bool storeInfo(const procPointList& nbrInfo, const label meshPointI);
+        bool storeInfo
+        (
+            const labelList& nbrInfo,
+            const label localPointI
+        );
 
         //- Initialize procPoints_ to my patch points. allPoints = true:
         //  seed with all patch points, = false: only boundaryPoints().
-        void initOwnPoints(const bool allPoints, labelHashSet& changedPoints);
+        void initOwnPoints
+        (
+            const Map<label>& meshToPatchPoint,
+            const bool allPoints,
+            labelHashSet& changedPoints
+        );
 
         //- Send subset of procPoints to neighbours
-        void sendPatchPoints(const labelHashSet& changedPoints) const;
+        void sendPatchPoints
+        (
+            const Map<label>&,
+            PstreamBuffers&,
+            const labelHashSet&
+        ) const;
 
         //- Receive neighbour points and merge into my procPoints.
-        void receivePatchPoints(labelHashSet& changedPoints);
+        void receivePatchPoints
+        (
+            const Map<label>&,
+            PstreamBuffers&,
+            labelHashSet&
+        );
 
         //- Remove entries of size 2 where meshPoint is in provided Map.
         //  Used to remove normal face-face connected points.
-        void remove(const Map<label>&);
+        void remove(const labelList& patchToMeshPoint, const Map<label>&);
+
+        //- Compact out unused elements of procPoints.
+        void compact();
 
         //- Get indices of point for which I am master (lowest numbered proc)
-        labelList getMasterPoints() const;
+        labelList getMasterPoints(const labelList& patchToMeshPoint) const;
 
         //- Send subset of shared points to neighbours
-        void sendSharedPoints(const labelList& changedIndices) const;
+        void sendSharedPoints(PstreamBuffers&, const labelList&) const;
 
         //- Receive shared points and update subset.
-        void receiveSharedPoints(labelList& changedIndices);
+        void receiveSharedPoints
+        (
+            const Map<label>&,
+            PstreamBuffers&,
+            labelList&
+        );
 
-
+        //- Should move into cyclicPolyPatch ordering problem
-        //- Should move into cyclicPolyPatch but some ordering problem
         //  keeps on giving problems.
         static edgeList coupledPoints(const cyclicPolyPatch&);
 
+        //- Do all calculations.
+        void calculateSharedPoints
+        (
+            const Map<label>&,
+            const labelList&,
+            const bool keepAllPoints
+        );
+
         //- Disallow default bitwise copy construct
         globalPoints(const globalPoints&);
 
@@ -220,36 +273,59 @@ public:
 
     // Constructors
 
-        //- Construct from mesh
+        //- Construct from mesh.
-        globalPoints(const polyMesh& mesh);
+        //  keepAllPoints = false : filter out points that are on two
+        //  neighbouring coupled patches (so can be swapped)
+        globalPoints(const polyMesh& mesh, const bool keepAllPoints);
+
+        //- Construct from mesh and patch of coupled faces. Difference with
+        //  construct from mesh only is that this stores the meshToProcPoint,
+        //  procPoints and sharedPointLabels as patch local point labels
+        //  instead of mesh point labels.
+        globalPoints
+        (
+            const polyMesh& mesh,
+            const indirectPrimitivePatch& coupledPatch,
+            const bool keepAllPoints
+        );
 
 
     // Member Functions
 
         // Access
 
-            label nPatchPoints() const
+            //- From (mesh or patch) point to index in procPoints
-            {
-                return nPatchPoints_;
-            }
-
             const Map<label>& meshToProcPoint() const
             {
                 return meshToProcPoint_;
             }
 
+            //- procPoints is per point the connected points (in global
+            //  point numbers)
+            const DynamicList<labelList>& procPoints() const
+            {
+                return procPoints_;
+            }
+
+            //- Global numbering of (mesh or patch) points
+            const globalIndex& globalIndices() const
+            {
+                return globalIndices_;
+            }
+
             //- shared points used by this processor (= global point number)
             const labelList& sharedPointAddr() const
             {
                 return sharedPointAddr_;
             }
 
-            //- my meshpoints corresponding to the shared points
+            //- my (mesh or patch)points corresponding to the shared points
             const labelList& sharedPointLabels() const
             {
                 return sharedPointLabels_;
             }
 
+            //- total number of shared points
             label nGlobalPoints() const
             {
                 return nGlobalPoints_;

src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/mapDistribute.C

@@ -288,6 +288,7 @@ Foam::mapDistribute::mapDistribute
 
         forAll(compactMap, procI)
         {
+            compactMap[procI].clear();
             if (procI != Pstream::myProcNo())
             {
                 compactMap[procI].resize(2*nNonLocal[procI]);
@@ -433,6 +434,7 @@ Foam::mapDistribute::mapDistribute
 
         forAll(compactMap, procI)
         {
+            compactMap[procI].clear();
             if (procI != Pstream::myProcNo())
             {
                 compactMap[procI].resize(2*nNonLocal[procI]);

src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/mapDistribute.H

@@ -276,6 +276,49 @@ public:
                 }
             }
 
+            //- Reverse distribute data using default commsType.
+            template<class T>
+            void reverseDistribute(const label constructSize, List<T>& fld)
+            const
+            {
+                if (Pstream::defaultCommsType == Pstream::nonBlocking)
+                {
+                    distribute
+                    (
+                        Pstream::nonBlocking,
+                        List<labelPair>(),
+                        constructSize,
+                        constructMap_,
+                        subMap_,
+                        fld
+                    );
+                }
+                else if (Pstream::defaultCommsType == Pstream::scheduled)
+                {
+                    distribute
+                    (
+                        Pstream::scheduled,
+                        schedule(),
+                        constructSize,
+                        constructMap_,
+                        subMap_,
+                        fld
+                    );
+                }
+                else
+                {
+                    distribute
+                    (
+                        Pstream::blocking,
+                        List<labelPair>(),
+                        constructSize,
+                        constructMap_,
+                        subMap_,
+                        fld
+                    );
+                }
+            }
+
             //- Correct for topo change.
             void updateMesh(const mapPolyMesh&)
             {

src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/mapDistributeTemplates.C

@@ -552,7 +552,6 @@ void Foam::mapDistribute::distribute
     {
         if (!contiguous<T>())
         {
-//XXXXXX
             PstreamBuffers pBuffs(Pstream::nonBlocking);
 
             // Stream data into buffer

src/OpenFOAM/meshes/polyMesh/syncTools/syncTools.H

@@ -26,7 +26,7 @@ Class
     Foam::syncTools
 
 Description
-    Various tools to aid synchronizing lists across coupled patches.
+    Various tools to aid synchronizing lists across coupled patches. WIP.
 
     Require
     - combineOperator (e.g. sumEqOp - not sumOp!) that is defined for the
@@ -34,8 +34,11 @@ Description
     - null value which gets overridden by any valid value.
     - transform function
 
-    Can apply coordinate rotation/separation on cyclics but only for faces
+    note:Can apply coordinate rotation/separation on cyclics but only for faces
     or if there is a single rotation/separation tensor.
+    note:syncPointList or syncEdgeList will visit shared points/edges
+    multiple times (once through patch exchange, once through shared
+    points reduce). Should be replaced by pointMesh functionality.
 
 SourceFiles
     syncTools.C

src/finiteVolume/fields/fvPatchFields/basic/sliced/slicedFvPatchField.C

@@ -55,7 +55,7 @@ slicedFvPatchField<Type>::slicedFvPatchField
     const DimensionedField<Type, volMesh>& iF
 )
 :
-    fvPatchField<Type>(p, iF)
+    fvPatchField<Type>(p, iF, Field<Type>())
 {}
 
 

src/mesh/autoMesh/Make/options

@@ -8,7 +8,6 @@ EXE_INC = \
     -I$(LIB_SRC)/triSurface/lnInclude
 
 LIB_LIBS = \
-    -ldecompositionMethods \
     -ldynamicMesh \
     -lfiniteVolume \
     -llagrangian \

src/mesh/autoMesh/autoHexMesh/autoHexMeshDriver/autoSnapDriver.C

@@ -1506,8 +1506,12 @@ void Foam::autoSnapDriver::doSnap
         // meshMover.
         calcNearestSurface(snapDist, meshMover);
 
-        // Get smoothly varying internal displacement field.
+        //// Get smoothly varying internal displacement field.
-        smoothDisplacement(snapParams, meshMover);
+        //- 2009-12-16 : was not found to be beneficial. Keeping internal
+        // fields fixed slightly increases skewness (on boundary)
+        // but lowers non-orthogonality quite a bit (e.g. 65->59 degrees).
+        // Maybe if better smoother?
+        //smoothDisplacement(snapParams, meshMover);
 
         // Apply internal displacement to mesh.
         scaleMesh(snapParams, nInitErrors, baffles, meshMover);

src/meshTools/Make/options

@@ -6,4 +6,5 @@ EXE_INC = \
 LIB_LIBS = \
     -ltriSurface \
     -ldecompositionMethods \
+    -lmetisDecompositionMethod \
     -llagrangian

src/parallel/Allwmake

@@ -3,6 +3,7 @@ cd ${0%/*} || exit 1    # run from this directory
 set -x
 
 wmake libso decompositionMethods
+wmake libso metisDecomp
 wmake libso reconstruct
 
 if [ -d "$FOAM_MPI_LIBBIN" ]

src/parallel/decompositionMethods/Make/files

@@ -6,6 +6,4 @@ manualDecomp/manualDecomp.C
 
 scotchDecomp/scotchDecomp.C
 
-metisDecomp/metisDecomp.C
-
 LIB = $(FOAM_LIBBIN)/libdecompositionMethods

src/parallel/decompositionMethods/Make/options

@@ -1,8 +1,6 @@
 EXE_INC = \
-    -I$(WM_THIRD_PARTY_DIR)/scotch_5.1/src/libscotch/lnInclude \
+    -I$(WM_THIRD_PARTY_DIR)/scotch_5.1/include \
-    -I$(WM_THIRD_PARTY_DIR)/metis-5.0pre2/include
+    -I../metisDecomp/lnInclude
 
 LIB_LIBS = \
-    -lscotch \
+    -lscotch -lscotcherrexit
-    -lmetis \
-    -lGKlib

src/parallel/decompositionMethods/scotchDecomp/scotchDecomp.C

@@ -61,17 +61,12 @@ License
 #include "scotchDecomp.H"
 #include "addToRunTimeSelectionTable.H"
 #include "floatScalar.H"
-#include "IFstream.H"
 #include "Time.H"
 #include "cyclicPolyPatch.H"
 #include "OFstream.H"
-#include "metisDecomp.H"
 
 extern "C"
 {
-#define OMPI_SKIP_MPICXX
-#include "module.h"
-#include "common.h"
 #include "scotch.h"
 }
 
@@ -115,13 +110,13 @@ void Foam::scotchDecomp::check(const int retVal, const char* str)
     if (retVal)
     {
         FatalErrorIn("scotchDecomp::decompose(..)")
-            << "Called to scotch routine " << str << " failed."
+            << "Call to scotch routine " << str << " failed."
             << exit(FatalError);
     }
 }
 
 
-// Call Metis with options from dictionary.
+// Call scotch with options from dictionary.
 Foam::label Foam::scotchDecomp::decompose
 (
     const List<int>& adjncy,
@@ -173,7 +168,7 @@ Foam::label Foam::scotchDecomp::decompose
         {
             FatalErrorIn
             (
-                "parMetisDecomp::decompose"
+                "scotchDecomp::decompose"
                 "(const pointField&, const scalarField&)"
             )   << "Number of cell weights " << cWeights.size()
                 << " does not equal number of cells " << xadj.size()-1
@@ -377,7 +372,10 @@ Foam::labelList Foam::scotchDecomp::decompose
 {
     if (points.size() != mesh_.nCells())
     {
-        FatalErrorIn("scotchDecomp::decompose(const pointField&)")
+        FatalErrorIn
+        (
+            "scotchDecomp::decompose(const pointField&, const scalarField&)"
+        )
             << "Can use this decomposition method only for the whole mesh"
             << endl
             << "and supply one coordinate (cellCentre) for every cell." << endl
@@ -391,12 +389,7 @@ Foam::labelList Foam::scotchDecomp::decompose
     //   xadj(celli) : start of information in adjncy for celli
     List<int> adjncy;
     List<int> xadj;
-    metisDecomp::calcMetisCSR
+    calcCSR(mesh_, adjncy, xadj);
-    (
-        mesh_,
-        adjncy,
-        xadj
-    );
 
     // Decompose using default weights
     List<int> finalDecomp;
@@ -445,7 +438,7 @@ Foam::labelList Foam::scotchDecomp::decompose
             cellCells
         );
 
-        metisDecomp::calcMetisCSR(cellCells, adjncy, xadj);
+        calcCSR(cellCells, adjncy, xadj);
     }
 
     // Decompose using weights
@@ -475,7 +468,8 @@ Foam::labelList Foam::scotchDecomp::decompose
     {
         FatalErrorIn
         (
-            "scotchDecomp::decompose(const pointField&, const labelListList&)"
+            "scotchDecomp::decompose"
+            "(const labelListList&, const pointField&, const scalarField&)"
         )   << "Inconsistent number of cells (" << globalCellCells.size()
             << ") and number of cell centres (" << cellCentres.size()
             << ")." << exit(FatalError);
@@ -488,7 +482,7 @@ Foam::labelList Foam::scotchDecomp::decompose
 
     List<int> adjncy;
     List<int> xadj;
-    metisDecomp::calcMetisCSR(globalCellCells, adjncy, xadj);
+    calcCSR(globalCellCells, adjncy, xadj);
 
     // Decompose using weights
     List<int> finalDecomp;
@@ -504,4 +498,144 @@ Foam::labelList Foam::scotchDecomp::decompose
 }
 
 
+void Foam::scotchDecomp::calcCSR
+(
+    const polyMesh& mesh,
+    List<int>& adjncy,
+    List<int>& xadj
+)
+{
+    // Make Metis CSR (Compressed Storage Format) storage
+    //   adjncy      : contains neighbours (= edges in graph)
+    //   xadj(celli) : start of information in adjncy for celli
+
+    xadj.setSize(mesh.nCells()+1);
+
+    // Initialise the number of internal faces of the cells to twice the
+    // number of internal faces
+    label nInternalFaces = 2*mesh.nInternalFaces();
+
+    // Check the boundary for coupled patches and add to the number of
+    // internal faces
+    const polyBoundaryMesh& pbm = mesh.boundaryMesh();
+
+    forAll(pbm, patchi)
+    {
+        if (isA<cyclicPolyPatch>(pbm[patchi]))
+        {
+            nInternalFaces += pbm[patchi].size();
+        }
+    }
+
+    // Create the adjncy array the size of the total number of internal and
+    // coupled faces
+    adjncy.setSize(nInternalFaces);
+
+    // Fill in xadj
+    // ~~~~~~~~~~~~
+    label freeAdj = 0;
+
+    for (label cellI = 0; cellI < mesh.nCells(); cellI++)
+    {
+        xadj[cellI] = freeAdj;
+
+        const labelList& cFaces = mesh.cells()[cellI];
+
+        forAll(cFaces, i)
+        {
+            label faceI = cFaces[i];
+
+            if
+            (
+                mesh.isInternalFace(faceI)
+             || isA<cyclicPolyPatch>(pbm[pbm.whichPatch(faceI)])
+            )
+            {
+                freeAdj++;
+            }
+        }
+    }
+    xadj[mesh.nCells()] = freeAdj;
+
+
+    // Fill in adjncy
+    // ~~~~~~~~~~~~~~
+
+    labelList nFacesPerCell(mesh.nCells(), 0);
+
+    // Internal faces
+    for (label faceI = 0; faceI < mesh.nInternalFaces(); faceI++)
+    {
+        label own = mesh.faceOwner()[faceI];
+        label nei = mesh.faceNeighbour()[faceI];
+
+        adjncy[xadj[own] + nFacesPerCell[own]++] = nei;
+        adjncy[xadj[nei] + nFacesPerCell[nei]++] = own;
+    }
+
+    // Coupled faces. Only cyclics done.
+    forAll(pbm, patchi)
+    {
+        if (isA<cyclicPolyPatch>(pbm[patchi]))
+        {
+            const unallocLabelList& faceCells = pbm[patchi].faceCells();
+
+            label sizeby2 = faceCells.size()/2;
+
+            for (label facei=0; facei<sizeby2; facei++)
+            {
+                label own = faceCells[facei];
+                label nei = faceCells[facei + sizeby2];
+
+                adjncy[xadj[own] + nFacesPerCell[own]++] = nei;
+                adjncy[xadj[nei] + nFacesPerCell[nei]++] = own;
+            }
+        }
+    }
+}
+
+
+// From cell-cell connections to Metis format (like CompactListList)
+void Foam::scotchDecomp::calcCSR
+(
+    const labelListList& cellCells,
+    List<int>& adjncy,
+    List<int>& xadj
+)
+{
+    // Count number of internal faces
+    label nConnections = 0;
+
+    forAll(cellCells, coarseI)
+    {
+        nConnections += cellCells[coarseI].size();
+    }
+
+    // Create the adjncy array as twice the size of the total number of
+    // internal faces
+    adjncy.setSize(nConnections);
+
+    xadj.setSize(cellCells.size()+1);
+
+
+    // Fill in xadj
+    // ~~~~~~~~~~~~
+    label freeAdj = 0;
+
+    forAll(cellCells, coarseI)
+    {
+        xadj[coarseI] = freeAdj;
+
+        const labelList& cCells = cellCells[coarseI];
+
+        forAll(cCells, i)
+        {
+            adjncy[freeAdj++] = cCells[i];
+        }
+    }
+    xadj[cellCells.size()] = freeAdj;
+}
+
+
+
 // ************************************************************************* //

src/parallel/decompositionMethods/scotchDecomp/scotchDecomp.H

@@ -135,6 +135,25 @@ public:
             const scalarField& cWeights
         );
 
+
+        //- Helper to convert local connectivity (supplied as owner,neighbour)
+        //  into CSR (Metis,scotch) storage. Does cyclics but not processor
+        //  patches
+        static void calcCSR
+        (
+            const polyMesh& mesh,
+            List<int>& adjncy,
+            List<int>& xadj
+        );
+
+        //- Helper to convert connectivity (supplied as cellcells) into
+        //  CSR (Metis,scotch) storage
+        static void calcCSR
+        (
+            const labelListList& globalCellCells,
+            List<int>& adjncy,
+            List<int>& xadj
+        );
 };
 
 

src/parallel/metisDecomp/Make/files

@@ -0,0 +1,3 @@
+metisDecomp.C
+
+LIB = $(FOAM_LIBBIN)/libmetisDecompositionMethod

src/parallel/metisDecomp/Make/options

@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(WM_THIRD_PARTY_DIR)/metis-5.0pre2/include \
+    -I../decompositionMethods/lnInclude
+
+LIB_LIBS = \
+    -lmetis \
+    -lGKlib

src/parallel/metisDecomp/metisDecomp.C

@@ -27,9 +27,8 @@ License
 #include "metisDecomp.H"
 #include "addToRunTimeSelectionTable.H"
 #include "floatScalar.H"
-#include "IFstream.H"
 #include "Time.H"
-#include "cyclicPolyPatch.H"
+#include "scotchDecomp.H"
 
 extern "C"
 {
@@ -331,12 +330,7 @@ Foam::labelList Foam::metisDecomp::decompose
 
     List<int> adjncy;
     List<int> xadj;
-    calcMetisCSR
+    scotchDecomp::calcCSR(mesh_, adjncy, xadj);
-    (
-        mesh_,
-        adjncy,
-        xadj
-    );
 
     // Decompose using default weights
     List<int> finalDecomp;
@@ -352,145 +346,6 @@ Foam::labelList Foam::metisDecomp::decompose
 }
 
 
-void Foam::metisDecomp::calcMetisCSR
-(
-    const polyMesh& mesh,
-    List<int>& adjncy,
-    List<int>& xadj
-)
-{
-    // Make Metis CSR (Compressed Storage Format) storage
-    //   adjncy      : contains neighbours (= edges in graph)
-    //   xadj(celli) : start of information in adjncy for celli
-
-    xadj.setSize(mesh.nCells()+1);
-
-    // Initialise the number of internal faces of the cells to twice the
-    // number of internal faces
-    label nInternalFaces = 2*mesh.nInternalFaces();
-
-    // Check the boundary for coupled patches and add to the number of
-    // internal faces
-    const polyBoundaryMesh& pbm = mesh.boundaryMesh();
-
-    forAll(pbm, patchi)
-    {
-        if (isA<cyclicPolyPatch>(pbm[patchi]))
-        {
-            nInternalFaces += pbm[patchi].size();
-        }
-    }
-
-    // Create the adjncy array the size of the total number of internal and
-    // coupled faces
-    adjncy.setSize(nInternalFaces);
-
-    // Fill in xadj
-    // ~~~~~~~~~~~~
-    label freeAdj = 0;
-
-    for (label cellI = 0; cellI < mesh.nCells(); cellI++)
-    {
-        xadj[cellI] = freeAdj;
-
-        const labelList& cFaces = mesh.cells()[cellI];
-
-        forAll(cFaces, i)
-        {
-            label faceI = cFaces[i];
-
-            if
-            (
-                mesh.isInternalFace(faceI)
-             || isA<cyclicPolyPatch>(pbm[pbm.whichPatch(faceI)])
-            )
-            {
-                freeAdj++;
-            }
-        }
-    }
-    xadj[mesh.nCells()] = freeAdj;
-
-
-    // Fill in adjncy
-    // ~~~~~~~~~~~~~~
-
-    labelList nFacesPerCell(mesh.nCells(), 0);
-
-    // Internal faces
-    for (label faceI = 0; faceI < mesh.nInternalFaces(); faceI++)
-    {
-        label own = mesh.faceOwner()[faceI];
-        label nei = mesh.faceNeighbour()[faceI];
-
-        adjncy[xadj[own] + nFacesPerCell[own]++] = nei;
-        adjncy[xadj[nei] + nFacesPerCell[nei]++] = own;
-    }
-
-    // Coupled faces. Only cyclics done.
-    forAll(pbm, patchi)
-    {
-        if (isA<cyclicPolyPatch>(pbm[patchi]))
-        {
-            const unallocLabelList& faceCells = pbm[patchi].faceCells();
-
-            label sizeby2 = faceCells.size()/2;
-
-            for (label facei=0; facei<sizeby2; facei++)
-            {
-                label own = faceCells[facei];
-                label nei = faceCells[facei + sizeby2];
-
-                adjncy[xadj[own] + nFacesPerCell[own]++] = nei;
-                adjncy[xadj[nei] + nFacesPerCell[nei]++] = own;
-            }
-        }
-    }
-}
-
-
-// From cell-cell connections to Metis format (like CompactListList)
-void Foam::metisDecomp::calcMetisCSR
-(
-    const labelListList& cellCells,
-    List<int>& adjncy,
-    List<int>& xadj
-)
-{
-    // Count number of internal faces
-    label nConnections = 0;
-
-    forAll(cellCells, coarseI)
-    {
-        nConnections += cellCells[coarseI].size();
-    }
-
-    // Create the adjncy array as twice the size of the total number of
-    // internal faces
-    adjncy.setSize(nConnections);
-
-    xadj.setSize(cellCells.size()+1);
-
-
-    // Fill in xadj
-    // ~~~~~~~~~~~~
-    label freeAdj = 0;
-
-    forAll(cellCells, coarseI)
-    {
-        xadj[coarseI] = freeAdj;
-
-        const labelList& cCells = cellCells[coarseI];
-
-        forAll(cCells, i)
-        {
-            adjncy[freeAdj++] = cCells[i];
-        }
-    }
-    xadj[cellCells.size()] = freeAdj;
-}
-
-
 Foam::labelList Foam::metisDecomp::decompose
 (
     const labelList& agglom,
@@ -525,7 +380,7 @@ Foam::labelList Foam::metisDecomp::decompose
             cellCells
         );
 
-        calcMetisCSR(cellCells, adjncy, xadj);
+        scotchDecomp::calcCSR(cellCells, adjncy, xadj);
     }
 
     // Decompose using default weights
@@ -570,7 +425,7 @@ Foam::labelList Foam::metisDecomp::decompose
 
     List<int> adjncy;
     List<int> xadj;
-    calcMetisCSR(globalCellCells, adjncy, xadj);
+    scotchDecomp::calcCSR(globalCellCells, adjncy, xadj);
 
 
     // Decompose using default weights

src/parallel/metisDecomp/metisDecomp.H

@@ -132,24 +132,6 @@ public:
             const scalarField& cWeights
         );
 
-        //- Helper to convert connectivity (supplied as owner,neighbour) into
-        //  Metis storage
-        static void calcMetisCSR
-        (
-            const polyMesh& mesh,
-            List<int>& adjncy,
-            List<int>& xadj
-        );
-
-        //- Helper to convert connectivity (supplied as cellcells) into
-        //  Metis storage
-        static void calcMetisCSR
-        (
-            const labelListList& globalCellCells,
-            List<int>& adjncy,
-            List<int>& xadj
-        );
-
 };
 
 

src/parallel/parMetisDecomp/Make/options

@@ -4,7 +4,8 @@ EXE_INC = \
     $(PFLAGS) $(PINC) \
     -I$(WM_THIRD_PARTY_DIR)/ParMetis-3.1/ParMETISLib \
     -I$(WM_THIRD_PARTY_DIR)/ParMetis-3.1 \
-    -I../decompositionMethods/lnInclude
+    -I../decompositionMethods/lnInclude \
+    -I../metisDecomp/lnInclude
 
 LIB_LIBS = \
     -L$(FOAM_MPI_LIBBIN) \

src/parallel/parMetisDecomp/parMetisDecomp.C

@@ -26,6 +26,7 @@ License
 
 #include "parMetisDecomp.H"
 #include "metisDecomp.H"
+#include "scotchDecomp.H"
 #include "syncTools.H"
 #include "addToRunTimeSelectionTable.H"
 #include "floatScalar.H"
@@ -434,7 +435,7 @@ Foam::labelList Foam::parMetisDecomp::decompose
         {
             FatalErrorIn
             (
-                "metisDecomp::decompose"
+                "parMetisDecomp::decompose"
                 "(const pointField&, const scalarField&)"
             )   << "Number of cell weights " << cWeights.size()
                 << " does not equal number of cells " << mesh_.nCells()
@@ -762,7 +763,7 @@ Foam::labelList Foam::parMetisDecomp::decompose
     Field<int> adjncy;
     // Offsets into adjncy
     Field<int> xadj;
-    metisDecomp::calcMetisCSR(globalCellCells, adjncy, xadj);
+    scotchDecomp::calcCSR(globalCellCells, adjncy, xadj);
 
     // decomposition options. 0 = use defaults
     List<int> options(3, 0);

src/turbulenceModels/compressible/RAS/derivedFvPatchFields/turbulentTemperatureCoupledBaffle/turbulentTemperatureCoupledBaffleFvPatchScalarField.H

@@ -36,7 +36,7 @@ Description
     Example usage:
         myInterfacePatchName
         {
-            type                turbulentTemperatureCoupledBaffle;
+            type    compressible::turbulentTemperatureCoupledBaffle;
             neighbourFieldName  T;
             K                   K; // or none
             value               uniform 300;

src/turbulenceModels/compressible/RAS/derivedFvPatchFields/turbulentTemperatureCoupledBaffleMixed/turbulentTemperatureCoupledBaffleMixedFvPatchScalarField.H

@@ -37,7 +37,7 @@ Description
     Example usage:
         myInterfacePatchName
         {
-            type                turbulentTemperatureCoupledBaffleMixed;
+            type        compressible::turbulentTemperatureCoupledBaffleMixed;
             neighbourFieldName  T;
             K                   K; // or none
             value               uniform 300;

tutorials/heatTransfer/buoyantBoussinesqSimpleFoam/iglooWithFridges/system/snappyHexMeshDict

@@ -220,6 +220,12 @@ castellatedMeshControls
     // NOTE: This point should never be on a face, always inside a cell, even
     // after refinement.
     locationInMesh (3 0.28 0.43);
+
+
+    // Whether any faceZones (as specified in the refinementSurfaces)
+    // are only on the boundary of corresponding cellZones or also allow
+    // free-standing zone faces. Not used if there are no faceZones.
+    allowFreeStandingZoneFaces true;
 }
 
 
@@ -311,7 +317,8 @@ addLayersControls
     maxThicknessToMedialRatio 0.3;
 
     // Angle used to pick up medial axis points
-    minMedianAxisAngle 130;
+    // Note: changed(corrected) w.r.t 16x! 90 degrees corresponds to 130 in 16x.
+    minMedianAxisAngle 90;
 
     // Create buffer region for new layer terminations
     nBufferCellsNoExtrude 0;

tutorials/incompressible/simpleFoam/motorBike/system/snappyHexMeshDict

@@ -145,6 +145,12 @@ castellatedMeshControls
     // NOTE: This point should never be on a face, always inside a cell, even
     // after refinement.
     locationInMesh (3 3 0.43);
+
+
+    // Whether any faceZones (as specified in the refinementSurfaces)
+    // are only on the boundary of corresponding cellZones or also allow
+    // free-standing zone faces. Not used if there are no faceZones.
+    allowFreeStandingZoneFaces true;
 }
 
 
@@ -500,7 +506,9 @@ addLayersControls
     maxThicknessToMedialRatio 0.3;
 
     // Angle used to pick up medial axis points
-    minMedianAxisAngle 130;
+    // Note: changed(corrected) w.r.t 16x! 90 degrees corresponds to 130 in 16x.
+    minMedianAxisAngle 90;
+
 
     // Create buffer region for new layer terminations
     nBufferCellsNoExtrude 0;