Merge branch 'master' of ssh://noisy/home/noisy2/OpenFOAM/OpenFOAM-dev/

This commit is contained in:
henry
2008-05-25 19:44:52 +01:00
27 changed files with 265 additions and 408 deletions

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/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 1.0 |
| \\ / A nd | Web: http://www.openfoam.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
// Rcomponents tool definition
description "Reynolds stress components";
RcomponentsDict
{
type dictionary;
description "Rcomponents control dictionary";
dictionaryPath "system";
entries
{
arguments
{
type rootCaseTimeArguments;
}
}
}
// ************************************************************************* //

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Rcomponents.C
EXE = $(FOAM_APPBIN)/Rcomponents

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EXE_INC = \
-I$(LIB_SRC)/finiteVolume/lnInclude
EXE_LIBS = \
-lfiniteVolume

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/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 1991-2007 OpenCFD Ltd.
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 2 of the License, or (at your
option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM; if not, write to the Free Software Foundation,
Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
Application
Rcomponents
Description
Calculates and writes the scalar fields of the six components of the
Reynolds stress R for each time.
\*---------------------------------------------------------------------------*/
#include "fvCFD.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
int main(int argc, char *argv[])
{
# include "addTimeOptions.H"
# include "setRootCase.H"
# include "createTime.H"
// Get times list
instantList Times = runTime.times();
// set startTime and endTime depending on -time and -latestTime options
# include "checkTimeOptions.H"
runTime.setTime(Times[startTime], startTime);
# include "createMesh.H"
for (label i=startTime; i<endTime; i++)
{
runTime.setTime(Times[i], i);
Info<< "Time = " << runTime.timeName() << endl;
IOobject Rheader
(
"R",
runTime.timeName(),
mesh,
IOobject::MUST_READ
);
// Check R exists
if (Rheader.headerOk())
{
mesh.readUpdate();
Info<< " Reading R" << endl;
volSymmTensorField R(Rheader, mesh);
for (direction i=0; i<tensor::nComponents; i++)
{
Info<< " Calculating R" << tensor::componentNames[i] << endl;
volScalarField Ri
(
IOobject
(
"R" + word(tensor::componentNames[i]),
runTime.timeName(),
mesh,
IOobject::NO_READ
),
R.component(i)
);
Ri.write();
}
}
else
{
Info<< " No R" << endl;
}
Info<< endl;
}
return(0);
}
// ************************************************************************* //

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/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 1.0 |
| \\ / A nd | Web: http://www.openfoam.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
// magGradU tool definition
description "Magnitude of grad(U) calculation";
magGradUDict
{
type dictionary;
description "magGradU control dictionary";
dictionaryPath "system";
entries
{
arguments
{
type rootCaseTimeArguments;
}
}
}
// ************************************************************************* //

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magGradU.C
EXE = $(FOAM_APPBIN)/magGradU

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EXE_INC = \
-I$(LIB_SRC)/finiteVolume/lnInclude
EXE_LIBS = \
-lfiniteVolume \

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/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 1991-2007 OpenCFD Ltd.
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 2 of the License, or (at your
option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM; if not, write to the Free Software Foundation,
Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
Application
magGradU
Description
Calculates and writes the scalar magnitude of velocity field U at each time
\*---------------------------------------------------------------------------*/
#include "fvCFD.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
// Main program:
int main(int argc, char *argv[])
{
# include "addTimeOptions.H"
# include "setRootCase.H"
# include "createTime.H"
// Get times list
instantList Times = runTime.times();
// set startTime and endTime depending on -time and -latestTime options
# include "checkTimeOptions.H"
runTime.setTime(Times[startTime], startTime);
# include "createMesh.H"
for (label i=startTime; i<endTime; i++)
{
runTime.setTime(Times[i], i);
Info<< "Time = " << runTime.timeName() << endl;
IOobject Uheader
(
"U",
runTime.timeName(),
mesh,
IOobject::MUST_READ
);
// Check U exists
if (Uheader.headerOk())
{
mesh.readUpdate();
Info<< " Reading U" << endl;
volVectorField U(Uheader, mesh);
Info<< " Calculating magGradU" << endl;
volScalarField magGradU
(
IOobject
(
"magGradU",
runTime.timeName(),
mesh,
IOobject::NO_READ
),
mag(fvc::grad(U))
);
magGradU.write();
}
else
{
Info<< " No U" << endl;
}
}
return(0);
}
// ************************************************************************* //

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#!/bin/sh #!/bin/sh
#------------------------------------------------------------------------------
# ========= |
# \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
# \\ / O peration |
# \\ / A nd | Copyright (C) 1991-2007 OpenCFD Ltd.
# \\/ M anipulation |
#------------------------------------------------------------------------------
# License
# This file is part of OpenFOAM.
#
# OpenFOAM is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 2 of the License, or (at your
# option) any later version.
#
# OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
# for more details.
#
# You should have received a copy of the GNU General Public License
# along with OpenFOAM; if not, write to the Free Software Foundation,
# Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
#
# Script
# buildParaView
#
# Description
# Build and install ParaView
# - run from folder above source folder
#
#------------------------------------------------------------------------------
set -x set -x
# ParaView 3.x build script . $WM_PROJECT_DIR/bin/buildParaViewFunctions
# - run from folder above source folder
PARAVIEW_SRC="ParaView3.3-cvs" PARAVIEW_SRC="ParaView3.3-cvs"
PARAVIEW_MAJOR_VERSION="3.2"
VERBOSE="OFF" VERBOSE="OFF"
INCLUDE_MPI="ON" INCLUDE_MPI="ON"
MPI_MAX_PROCS=32 MPI_MAX_PROCS=32
INCLUDE_PYTHON="ON" INCLUDE_PYTHON="ON"
#PYTHON_LIBRARY="/usr/lib64/libpython2.5.so.1.0"
PYTHON_LIBRARY=""
INCLUDE_MESA="OFF" INCLUDE_MESA="OFF"
# initialisation
CMAKE_VARIABLES=""
PWD=`pwd`
OBJ_ADD=""
# set general options initialiseVariables
CMAKE_VARIABLES="$CMAKE_VARIABLES -DBUILD_SHARED_LIBS:BOOL=ON"
if [ "$VERBOSE" = "ON" ]; then
CMAKE_VARIABLES="$CMAKE_VARIABLES -DCMAKE_VERBOSE_MAKEFILE=TRUE"
fi
# set MPI specific options # set MPI specific options
if [ "$INCLUDE_MPI" = "ON" ]; then if [ "$INCLUDE_MPI" = "ON" ]; then
OBJ_ADD="$OBJ_ADD-mpi" addMpiSupport
if [ "$WM_MPLIB" = "OPENMPI" ]; then
MPI_INCLUDE_PATH=$OPENMPI_ARCH_PATH/include
MPI_LIBRARY=$OPENMPI_ARCH_PATH/lib/libmpi.so
MPI_RUN=$OPENMPI_ARCH_PATH/bin/mpirun
elif [ "$WM_MPLIB" = "LAM" ]; then
MPI_INCLUDE_PATH=$LAM_ARCH_PATH/include
MPI_LIBRARY=$LAM_ARCH_PATH/lib/libmpi.so
MPI_RUN=$LAM_ARCH_PATH/bin/mpirun
elif [ "$WM_MPLIB" = "MPICH" ]; then
MPI_INCLUDE_PATH=$MPICH_ARCH_PATH/include
MPI_LIBRARY=$MPICH_ARCH_PATH/lib/libmpich.so
MPI_RUN=$MPICH_ARCH_PATH/bin/mpirun
fi
CMAKE_VARIABLES="$CMAKE_VARIABLES -DVTK_USE_MPI=ON"
CMAKE_VARIABLES="$CMAKE_VARIABLES -DPARAVIEW_USE_MPI=ON"
CMAKE_VARIABLES="$CMAKE_VARIABLES -DMPI_INCLUDE_PATH=$MPI_INCLUDE_PATH"
CMAKE_VARIABLES="$CMAKE_VARIABLES -DMPI_LIBRARY=$MPI_LIBRARY"
CMAKE_VARIABLES="$CMAKE_VARIABLES -DVTK_MPIRUN_EXE=$MPI_RUN"
CMAKE_VARIABLES="$CMAKE_VARIABLES -DVTK_MPI_MAX_NUMPROCS=$MPI_MAX_PROCS"
fi fi
# set python specific options # set python specific options
if [ "$INCLUDE_PYTHON" = "ON" ]; then if [ "$INCLUDE_PYTHON" = "ON" ]; then
WHICH_PYTHON=`which python` addPythonSupport
if [ "$WHICH_PYTHON" != "" ]; then
OBJ_ADD="$OBJ_ADD-py"
PYTHON_LIBRARY=`ldd $WHICH_PYTHON | grep libpython | \
sed 's/.* => \(.*\) (.*/\1/'`
PYTHON_MAJOR_VERSION=`echo $PYTHON_LIBRARY | \
sed 's/.*libpython\(.*\).so.*/\1/'`
PYTHON_INCLUDE_DIR=/usr/include/python$PYTHON_MAJOR_VERSION
CMAKE_VARIABLES="$CMAKE_VARIABLES -DPARAVIEW_ENABLE_PYTHON=ON"
CMAKE_VARIABLES= \
"$CMAKE_VARIABLES -DPYTHON_INCLUDE_PATH=$PYTHON_INCLUDE_DIR"
CMAKE_VARIABLES="$CMAKE_VARIABLES -DPYTHON_LIBRARY=$PYTHON_LIBRARY"
else
echo "*** Warning: Unable to determine python libray"
echo "*** De-activating python support"
INCLUDE_PYTHON="OFF"
fi
fi fi
# set MESA specific options # set MESA specific options
if [ "$INCLUDE_MESA" = "ON" ]; then if [ "$INCLUDE_MESA" = "ON" ]; then
OBJ_ADD="$OBJ_ADD-mesa" addMesaSupport
MESA_INCLUDE_DIR=/usr/include/GL
MESA_LIBRARY=/usr/lib$WM_COMPILER_LIB_ARCH/libOSMesa.so
CMAKE_VARIABLES="$CMAKE_VARIABLES -DVTK_OPENGL_HAS_OSMESA=ON"
CMAKE_VARIABLES="$CMAKE_VARIABLES -DOSMESA_INCLUDE_DIR=$MESA_INCLUDE_DIR"
CMAKE_VARIABLES="$CMAKE_VARIABLES -DOSMESA_LIBRARY=$MESA_LIBRARY"
fi fi
# set paraview environment buildParaView
PARAVIEW_SRC_DIR=$PWD/$PARAVIEW_SRC
#PARAVIEW_OBJ_DIR=$PARAVIEW_SRC_DIR/platforms/$WM_OPTIONS/obj$OBJ_ADD
PARAVIEW_OBJ_DIR=$PARAVIEW_SRC_DIR/platforms/$WM_OPTIONS
# remove existing build folder if present installParaView
if [ -e "$PARAVIEW_OBJ_DIR" ]; then
rm -rf $PARAVIEW_OBJ_DIR
fi
# create paraview build folder
mkdir -p $PARAVIEW_OBJ_DIR
cd $PARAVIEW_OBJ_DIR
echo "Building $PARAVIEW_SRC"
echo " MPI support : $INCLUDE_MPI"
echo " Python support : $INCLUDE_PYTHON"
echo " MESA support : $INCLUDE_MESA"
echo " Source : $PARAVIEW_SRC_DIR"
echo " Target : $PARAVIEW_OBJ_DIR"
# make paraview
cmake \
-DCMAKE_INSTALL_PREFIX=$PARAVIEW_APP_DIR \
$CMAKE_VARIABLES \
$PARAVIEW_SRC_DIR
if [ -r /proc/cpuinfo ]; then
WM_NCOMPPROCS=`egrep "^processor" /proc/cpuinfo | wc -l`
if [ $WM_NCOMPPROCS -gt 8 ]; then
WM_NCOMPPROCS=8
fi
make -j $WM_NCOMPPROCS
else
make
fi
if [ -e "$PARAVIEW_OBJ_DIR/bin/paraview" ]; then
echo " Build complete"
# replace local links with ParaView_INST_DIR environment variables
echo " Replacing path hard links"
find . -iname \*.cmake -execdir sed -i \
"s,$PARAVIEW_SRC_DIR,\$ENV{ParaView_INST_DIR},g" {} ';' \
-print
# create a softlink to the $PARAVIEW_OBJ_DIR/bin folder
echo " Creating paraview 3.2 soft link to /bin"
( mkdir lib && cd lib && ln -s ../bin paraview-3.2 )
# info on symlinks to screen
echo ""
echo " ---"
echo " Installation complete"
echo " Set environment variables:"
echo " - ParaView_INST_DIR to $PARAVIEW_SRC_DIR"
echo " - ParaView_DIR to $PARAVIEW_OBJ_DIR"
echo " - PV_PLUGIN_PATH to $FOAM_LIBBIN"
echo " Add $PARAVIEW_OBJ_DIR/bin to PATH"
#echo " Add $ParaView_INST_DIR/lib to LD_LIBRARY_PATH"
echo " ---"
echo "done."
fi
# finalisation # finalisation
cd $PWD cd $PWD
echo "done."

221
bin/buildParaViewFunctions Normal file
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#!/bin/sh
#------------------------------------------------------------------------------
# ========= |
# \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
# \\ / O peration |
# \\ / A nd | Copyright (C) 1991-2007 OpenCFD Ltd.
# \\/ M anipulation |
#------------------------------------------------------------------------------
# License
# This file is part of OpenFOAM.
#
# OpenFOAM is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 2 of the License, or (at your
# option) any later version.
#
# OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
# for more details.
#
# You should have received a copy of the GNU General Public License
# along with OpenFOAM; if not, write to the Free Software Foundation,
# Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
#
# Script
# buildParaViewFunctions
#
# Description
# ParaView build/install helper functions
#
#------------------------------------------------------------------------------
initialiseVariables ()
{
CMAKE_VARIABLES=""
PWD=`pwd`
OBJ_ADD=""
if [ "$VERBOSE" = "ON" ]; then
addCMakeVariable "CMAKE_VERBOSE_MAKEFILE=TRUE"
fi
}
addCMakeVariable ()
{
if [ -z "$1" ]; then
echo "*** Error: addCMakeVariable()"
echo " No variable to add"
fi
CMAKE_VARIABLES="$CMAKE_VARIABLES -D$1"
}
addMpiSupport ()
{
OBJ_ADD="$OBJ_ADD-mpi"
# using OpenFOAM variables to identify location of MPI libraries
if [ "$WM_MPLIB" = "OPENMPI" ]; then
MPI_INCLUDE_PATH=$OPENMPI_ARCH_PATH/include
MPI_LIBRARY=$OPENMPI_ARCH_PATH/lib/libmpi.so
MPI_RUN=$OPENMPI_ARCH_PATH/bin/mpirun
elif [ "$WM_MPLIB" = "LAM" ]; then
MPI_INCLUDE_PATH=$LAM_ARCH_PATH/include
MPI_LIBRARY=$LAM_ARCH_PATH/lib/libmpi.so
MPI_RUN=$LAM_ARCH_PATH/bin/mpirun
elif [ "$WM_MPLIB" = "MPICH" ]; then
MPI_INCLUDE_PATH=$MPICH_ARCH_PATH/include
MPI_LIBRARY=$MPICH_ARCH_PATH/lib/libmpich.so
MPI_RUN=$MPICH_ARCH_PATH/bin/mpirun
fi
addCMakeVariable "VTK_USE_MPI=ON"
addCMakeVariable "PARAVIEW_USE_MPI=ON"
addCMakeVariable "MPI_INCLUDE_PATH=$MPI_INCLUDE_PATH"
addCMakeVariable "MPI_LIBRARY=$MPI_LIBRARY"
addCMakeVariable "VTK_MPIRUN_EXE=$MPI_RUN"
addCMakeVariable "VTK_MPI_MAX_NUMPROCS=$MPI_MAX_PROCS"
}
addPythonSupport ()
{
WHICH_PYTHON=`which python`
if [ -n "$WHICH_PYTHON" ]; then
OBJ_ADD="$OBJ_ADD-py"
if [ -n "$PYTHON_LIBRARY" ]; then
# check $PYTHON_LIBRARY if it has been set
if [ ! -e "$PYTHON_LIBRARY" ]; then
echo "*** Error: libpython not found at location specified " \
"by PYTHON_LIBRARY: $PYTHON_LIBRARY"
echo " Please set the variable PYTHON_LIBRARY to the full"
echo " path to (and including) libpython, or deactivate"
echo " python support by setting INCLUDE_PYTHON=OFF"
exit 1
fi
else
# Try to obtain $PYTHON_LIBRARY if not set
# - assumes dynamically linked
PYTHON_LIBRARY=`ldd $WHICH_PYTHON | grep libpython | \
sed 's/.* => \(.*\) (.*/\1/'`
fi
if [ ! -n "$PYTHON_LIBRARY" ]; then
echo "*** Error: Unable to determine path to python library."
echo " Please set the variable PYTHON_LIBRARY to the full"
echo " path to (and including) libpython, or deactivate"
echo " python support by setting INCLUDE_PYTHON=OFF"
exit 1
fi
PYTHON_MAJOR_VERSION=`echo $PYTHON_LIBRARY | \
sed 's/.*libpython\(.*\).so.*/\1/'`
PYTHON_INCLUDE_DIR=/usr/include/python$PYTHON_MAJOR_VERSION
addCMakeVariable "PARAVIEW_ENABLE_PYTHON=ON"
addCMakeVariable "PYTHON_INCLUDE_PATH=$PYTHON_INCLUDE_DIR"
addCMakeVariable "PYTHON_LIBRARY=$PYTHON_LIBRARY"
else
echo "*** Error: python not installed"
echo "*** De-activate python support by setting " \
"INCLUDE_PYTHON=OFF"
exit 1
fi
}
addMesaSupport ()
{
OBJ_ADD="$OBJ_ADD-mesa"
MESA_INCLUDE_DIR=/usr/include/GL
MESA_LIBRARY=/usr/lib$WM_COMPILER_LIB_ARCH/libOSMesa.so
addCMakeVariable "VTK_OPENGL_HAS_OSMESA=ON"
addCMakeVariable "OSMESA_INCLUDE_DIR=$MESA_INCLUDE_DIR"
addCMakeVariable "OSMESA_LIBRARY=$MESA_LIBRARY"
}
buildParaView ()
{
# set general options
addCmakeVariable "DBUILD_SHARED_LIBS:BOOL=ON"
# set paraview environment
PARAVIEW_SRC_DIR=$PWD/$PARAVIEW_SRC
#PARAVIEW_OBJ_DIR=$PARAVIEW_SRC_DIR/platforms/$WM_OPTIONS/obj$OBJ_ADD
PARAVIEW_OBJ_DIR=$PARAVIEW_SRC_DIR/platforms/$WM_OPTIONS
# remove existing build folder if present
if [ -e "$PARAVIEW_OBJ_DIR" ]; then
rm -rf $PARAVIEW_OBJ_DIR
fi
# create paraview build folder
mkdir -p $PARAVIEW_OBJ_DIR
cd $PARAVIEW_OBJ_DIR
echo "Building $PARAVIEW_SRC"
echo " MPI support : $INCLUDE_MPI"
echo " Python support : $INCLUDE_PYTHON"
echo " MESA support : $INCLUDE_MESA"
echo " Source : $PARAVIEW_SRC_DIR"
echo " Target : $PARAVIEW_OBJ_DIR"
# make paraview
cmake \
-DCMAKE_INSTALL_PREFIX=$PARAVIEW_APP_DIR \
$CMAKE_VARIABLES \
$PARAVIEW_SRC_DIR
if [ -r /proc/cpuinfo ]; then
WM_NCOMPPROCS=`egrep "^processor" /proc/cpuinfo | wc -l`
if [ $WM_NCOMPPROCS -gt 8 ]; then
WM_NCOMPPROCS=8
fi
make -j $WM_NCOMPPROCS
else
make
fi
}
installParaView ()
{
if [ -e "$PARAVIEW_OBJ_DIR/bin/paraview" ]; then
echo " Build complete"
cd $PARAVIEW_OBJ_DIR
# replace local links with ParaView_INST_DIR environment variables
echo " Replacing path hard links"
find . -iname \*.cmake -execdir sed -i \
"s,$PARAVIEW_SRC_DIR,\$ENV{ParaView_INST_DIR},g" {} ';' \
-print
# create a softlink to the $PARAVIEW_OBJ_DIR/bin folder
# - work-around for chosen install location
echo " Creating paraview $PARAVIEW_MAJOR_VERSION soft link to /bin"
( mkdir lib && cd lib && ln -s ../bin \
paraview-$PARAVIEW_MAJOR_VERSION )
# info on symlinks to screen
echo ""
echo " ---"
echo " Installation complete"
echo " Set environment variables:"
echo " - ParaView_INST_DIR to $PARAVIEW_SRC_DIR"
echo " - ParaView_DIR to $PARAVIEW_OBJ_DIR"
echo " - PV_PLUGIN_PATH to $FOAM_LIBBIN"
echo " Add $PARAVIEW_OBJ_DIR/bin to PATH"
#echo " Add $ParaView_INST_DIR/lib to LD_LIBRARY_PATH"
echo " ---"
fi
}