Merge branch 'master' of /home/dm4/OpenFOAM/OpenFOAM-dev

applications/utilities/mesh/generation/extrude/extrudeToRegionMesh/extrudeToRegionMesh.C

@@ -36,7 +36,6 @@ Description
       (nonuniformTransform)cyclic \<zoneA\>_\<zoneB\>
     - extrudes into master direction (i.e. away from the owner cell
       if flipMap is false)
-    - not parallel
 
 \verbatim
 

applications/utilities/postProcessing/sampling/sample/sampleDict

@@ -47,12 +47,14 @@ formatOptions
 }
 
 // interpolationScheme. choice of
-//      cell          : use cell-centre value only; constant over cells (default)
+//      cell          : use cell-centre value only; constant over cells
+//                      (default)
 //      cellPoint     : use cell-centre and vertex values
 //      cellPointFace : use cell-centre, vertex and face values.
 //      pointMVC      : use point values only (Mean Value Coordinates)
-//      cellPatchConstrained : use cell-centre except on boundary faces where
+//      cellPatchConstrained : like 'cell' but uses cell-centre except on
-//        it uses the boundary value. For use with e.g. patchCloudSet.
+//                             boundary faces where it uses the boundary value.
+//                             For use with e.g. patchCloudSet.
 // 1] vertex values determined from neighbouring cell-centre values
 // 2] face values determined using the current face interpolation scheme
 //    for the field (linear, gamma, etc.)

applications/utilities/surface/surfaceFeatureExtract/surfaceFeatureExtract.C

@@ -486,7 +486,7 @@ int main(int argc, char *argv[])
     (
         "dict",
         "word",
-        "name of dictionary to provide feature extraction information"
+        "specify alternative dictionary for the feature extraction information"
     );
 
 #   include "setRootCase.H"

src/OpenFOAM/fields/UniformDimensionedFields/UniformDimensionedField.C

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -36,7 +36,22 @@ Foam::UniformDimensionedField<Type>::UniformDimensionedField
 :
     regIOobject(io),
     dimensioned<Type>(dt)
-{}
+{
+    // Read value
+    if
+    (
+        (
+            io.readOpt() == IOobject::MUST_READ
+         || io.readOpt() == IOobject::MUST_READ_IF_MODIFIED
+        )
+     || (io.readOpt() == IOobject::READ_IF_PRESENT && headerOk())
+    )
+    {
+        dictionary dict(readStream(typeName));
+        this->dimensions().reset(dict.lookup("dimensions"));
+        dict.lookup("value") >> this->value();
+    }
+}
 
 
 template<class Type>

src/OpenFOAM/fields/UniformDimensionedFields/UniformDimensionedField.H

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -64,7 +64,7 @@ public:
 
     // Constructors
 
-        //- Construct from components
+        //- Construct from components. Either reads or uses supplied value.
         UniformDimensionedField(const IOobject&, const dimensioned<Type>&);
 
         //- Construct as copy

src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8.C

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -1745,6 +1745,7 @@ void Foam::hexRef8::setInstance(const fileName& inst)
 
     cellLevel_.instance() = inst;
     pointLevel_.instance() = inst;
+    level0Edge_.instance() = inst;
     history_.instance() = inst;
 }
 
@@ -1752,7 +1753,7 @@ void Foam::hexRef8::setInstance(const fileName& inst)
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
 // Construct from mesh, read refinement data
-Foam::hexRef8::hexRef8(const polyMesh& mesh)
+Foam::hexRef8::hexRef8(const polyMesh& mesh, const bool readHistory)
 :
     mesh_(mesh),
     cellLevel_
@@ -1781,7 +1782,19 @@ Foam::hexRef8::hexRef8(const polyMesh& mesh)
         ),
         labelList(mesh_.nPoints(), 0)
     ),
-    level0Edge_(getLevel0EdgeLength()),
+    level0Edge_
+    (
+        IOobject
+        (
+            "level0Edge",
+            mesh_.facesInstance(),
+            polyMesh::meshSubDir,
+            mesh_,
+            IOobject::READ_IF_PRESENT,
+            IOobject::AUTO_WRITE
+        ),
+        dimensionedScalar("level0Edge", dimLength, getLevel0EdgeLength())
+    ),
     history_
     (
         IOobject
@@ -1790,15 +1803,24 @@ Foam::hexRef8::hexRef8(const polyMesh& mesh)
             mesh_.facesInstance(),
             polyMesh::meshSubDir,
             mesh_,
-            IOobject::READ_IF_PRESENT,
+            IOobject::NO_READ,
             IOobject::AUTO_WRITE
         ),
-        mesh_.nCells()    // All cells visible if could not be read
+        (readHistory ? mesh_.nCells() : 0)  // All cells visible if not be read
     ),
     faceRemover_(mesh_, GREAT),     // merge boundary faces wherever possible
     savedPointLevel_(0),
     savedCellLevel_(0)
 {
+    if (readHistory)
+    {
+        history_.readOpt() = IOobject::READ_IF_PRESENT;
+        if (history_.headerOk())
+        {
+            history_.read();
+        }
+    }
+
     if (history_.active() && history_.visibleCells().size() != mesh_.nCells())
     {
         FatalErrorIn
@@ -1849,7 +1871,8 @@ Foam::hexRef8::hexRef8
     const polyMesh& mesh,
     const labelList& cellLevel,
     const labelList& pointLevel,
-    const refinementHistory& history
+    const refinementHistory& history,
+    const scalar level0Edge
 )
 :
     mesh_(mesh),
@@ -1879,7 +1902,24 @@ Foam::hexRef8::hexRef8
         ),
         pointLevel
     ),
-    level0Edge_(getLevel0EdgeLength()),
+    level0Edge_
+    (
+        IOobject
+        (
+            "level0Edge",
+            mesh_.facesInstance(),
+            polyMesh::meshSubDir,
+            mesh_,
+            IOobject::NO_READ,
+            IOobject::AUTO_WRITE
+        ),
+        dimensionedScalar
+        (
+            "level0Edge",
+            dimLength,
+            (level0Edge >= 0 ? level0Edge : getLevel0EdgeLength())
+        )
+    ),
     history_
     (
         IOobject
@@ -1945,7 +1985,8 @@ Foam::hexRef8::hexRef8
 (
     const polyMesh& mesh,
     const labelList& cellLevel,
-    const labelList& pointLevel
+    const labelList& pointLevel,
+    const scalar level0Edge
 )
 :
     mesh_(mesh),
@@ -1975,7 +2016,24 @@ Foam::hexRef8::hexRef8
         ),
         pointLevel
     ),
-    level0Edge_(getLevel0EdgeLength()),
+    level0Edge_
+    (
+        IOobject
+        (
+            "level0Edge",
+            mesh_.facesInstance(),
+            polyMesh::meshSubDir,
+            mesh_,
+            IOobject::NO_READ,
+            IOobject::AUTO_WRITE
+        ),
+        dimensionedScalar
+        (
+            "level0Edge",
+            dimLength,
+            (level0Edge >= 0 ? level0Edge : getLevel0EdgeLength())
+        )
+    ),
     history_
     (
         IOobject
@@ -2621,7 +2679,7 @@ Foam::labelList Foam::hexRef8::consistentSlowRefinement2
             << "Value should be >= 1" << exit(FatalError);
     }
 
-    const scalar level0Size = 2*maxFaceDiff*level0Edge_;
+    const scalar level0Size = 2*maxFaceDiff*level0EdgeLength();
 
 
     // Bit tricky. Say we want a distance of three cells between two
@@ -5514,7 +5572,10 @@ void Foam::hexRef8::setUnrefinement
 // Write refinement to polyMesh directory.
 bool Foam::hexRef8::write() const
 {
-    bool writeOk = cellLevel_.write() && pointLevel_.write();
+    bool writeOk =
+        cellLevel_.write()
+     && pointLevel_.write()
+     && level0Edge_.write();
 
     if (history_.active())
     {

src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8.H

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
+    \\  /    A nd           | Copyright (C) 2011-2012 OpenFOAM Foundation
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -43,6 +43,7 @@ SourceFiles
 #include "removeFaces.H"
 #include "refinementHistory.H"
 #include "PackedBoolList.H"
+#include "uniformDimensionedFields.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -74,7 +75,7 @@ class hexRef8
         labelIOList pointLevel_;
 
         //- Typical edge length between unrefined points
-        const scalar level0Edge_;
+        uniformDimensionedScalarField level0Edge_;
 
         //- Refinement history
         refinementHistory history_;
@@ -319,24 +320,29 @@ public:
     // Constructors
 
         //- Construct from mesh, read_if_present refinement data
-        //  (from write below)
+        //  (from write below). If readHistory is true does read_if_present
-        hexRef8(const polyMesh& mesh);
+        //  of refinement history. If false clears all history
+        hexRef8(const polyMesh& mesh, const bool readHistory = true);
 
-        //- Construct from mesh and un/refinement data.
+        //- Construct from mesh and un/refinement data and optional size of
+        //  starting cells
         hexRef8
         (
             const polyMesh& mesh,
             const labelList& cellLevel,
             const labelList& pointLevel,
-            const refinementHistory& history
+            const refinementHistory& history,
+            const scalar level0Edge = -GREAT
         );
 
-        //- Construct from mesh and refinement data.
+        //- Construct from mesh and refinement data and optional size of
+        //  starting cells
         hexRef8
         (
             const polyMesh& mesh,
             const labelList& cellLevel,
-            const labelList& pointLevel
+            const labelList& pointLevel,
+            const scalar level0Edge = -GREAT
         );
 
 
@@ -367,7 +373,7 @@ public:
             //- Typical edge length between unrefined points
             scalar level0EdgeLength() const
             {
-                return level0Edge_;
+                return level0Edge_.value();
             }
 
         // Refinement

src/fileFormats/vtk/vtkUnstructuredReader.C

@@ -704,6 +704,7 @@ void Foam::vtkUnstructuredReader::read(ISstream& inFile)
             labelList faceVerts;
             readBlock(inFile, nNumbers, faceVerts);
             faces_.setSize(nFaces);
+            faceMap_.setSize(nFaces);
             label elemI = 0;
             forAll(faces_, faceI)
             {

src/mesh/autoMesh/autoHexMesh/meshRefinement/meshRefinement.C

@@ -877,49 +877,7 @@ Foam::meshRefinement::meshRefinement
     meshCutter_
     (
         mesh,
-        labelIOList
+        false   // do not try to read history.
-        (
-            IOobject
-            (
-                "cellLevel",
-                mesh_.facesInstance(),
-                fvMesh::meshSubDir,
-                mesh,
-                IOobject::READ_IF_PRESENT,
-                IOobject::NO_WRITE,
-                false
-            ),
-            labelList(mesh_.nCells(), 0)
-        ),
-        labelIOList
-        (
-            IOobject
-            (
-                "pointLevel",
-                mesh_.facesInstance(),
-                fvMesh::meshSubDir,
-                mesh,
-                IOobject::READ_IF_PRESENT,
-                IOobject::NO_WRITE,
-                false
-            ),
-            labelList(mesh_.nPoints(), 0)
-        ),
-        refinementHistory
-        (
-            IOobject
-            (
-                "refinementHistory",
-                mesh_.facesInstance(),
-                fvMesh::meshSubDir,
-                mesh_,
-                IOobject::NO_READ,
-                IOobject::NO_WRITE,
-                false
-            ),
-            List<refinementHistory::splitCell8>(0),
-            labelList(0)
-        )   // no unrefinement
     ),
     surfaceIndex_
     (

src/thermophysicalModels/radiationModels/submodels/absorptionEmissionModel/greyMeanAbsorptionEmission/greyMeanAbsorptionEmission.C

@@ -284,24 +284,7 @@ Foam::radiation::greyMeanAbsorptionEmission::aCont(const label bandI) const
 Foam::tmp<Foam::volScalarField>
 Foam::radiation::greyMeanAbsorptionEmission::eCont(const label bandI) const
 {
-    tmp<volScalarField> e
+   return aCont(bandI);
-    (
-        new volScalarField
-        (
-            IOobject
-            (
-                "eCont" + name(bandI),
-                mesh().time().timeName(),
-                mesh(),
-                IOobject::NO_READ,
-                IOobject::NO_WRITE
-            ),
-            mesh(),
-            dimensionedScalar("e", dimless/dimLength, 0.0)
-        )
-    );
-
-    return e;
 }
 
 

src/thermophysicalModels/radiationModels/submodels/absorptionEmissionModel/wideBandAbsorptionEmission/wideBandAbsorptionEmission.C

@@ -231,24 +231,7 @@ Foam::radiation::wideBandAbsorptionEmission::aCont(const label bandI) const
 Foam::tmp<Foam::volScalarField>
 Foam::radiation::wideBandAbsorptionEmission::eCont(const label bandI) const
 {
-    tmp<volScalarField> e
+    return aCont(bandI);
-    (
-        new volScalarField
-        (
-            IOobject
-            (
-                "e",
-                mesh().time().timeName(),
-                mesh(),
-                IOobject::NO_READ,
-                IOobject::NO_WRITE
-            ),
-            mesh(),
-            dimensionedScalar("e", dimless/dimLength, 0.0)
-        )
-    );
-
-    return e;
 }
 
 

tutorials/combustion/fireFoam/les/oppositeBurningPanels/constant/radiationProperties

@@ -137,6 +137,61 @@ greyMeanAbsorptionEmissionCoeffs
         );
     }
 
+    O2
+    {
+        Tcommon         300;
+        invTemp         true;
+        Tlow            200;
+        Thigh           2500;
+
+        loTcoeffs
+        (
+            0
+            0
+            0
+            0
+            0
+            0
+        );
+        hiTcoeffs
+        (
+            0.1
+            0
+            0
+            0
+            0
+            0
+        );
+    }
+
+
+    N2
+    {
+        Tcommon         300;
+        invTemp         true;
+        Tlow            200;
+        Thigh           2500;
+
+        loTcoeffs
+        (
+            0
+            0
+            0
+            0
+            0
+            0
+        );
+        hiTcoeffs
+        (
+            0.1
+            0
+            0
+            0
+            0
+            0
+        );
+    }
+
 }
 
 scatterModel    constantScatter;

tutorials/combustion/fireFoam/les/smallPoolFire2D/constant/radiationProperties

@@ -43,7 +43,7 @@ absorptionEmissionModel greyMeanAbsorptionEmission;
 constantAbsorptionEmissionCoeffs
 {
     a               a [ 0 -1 0 0 0 0 0 ] 0.01;
-    e               e [ 0 -1 0 0 0 0 0 ] 0;
+    e               e [ 0 -1 0 0 0 0 0 ] 0.01;
     E               E [ 1 -1 -3 0 0 0 0 ] 0;
 }
 
@@ -134,6 +134,61 @@ greyMeanAbsorptionEmissionCoeffs
             0
         );
     }
+
+    O2
+    {
+        Tcommon         300;
+        invTemp         true;
+        Tlow            200;
+        Thigh           2500;
+
+        loTcoeffs
+        (
+            0
+            0
+            0
+            0
+            0
+            0
+        );
+        hiTcoeffs
+        (
+            0.1
+            0
+            0
+            0
+            0
+            0
+        );
+    }
+
+
+    N2
+    {
+        Tcommon         300;
+        invTemp         true;
+        Tlow            200;
+        Thigh           2500;
+
+        loTcoeffs
+        (
+            0
+            0
+            0
+            0
+            0
+            0
+        );
+        hiTcoeffs
+        (
+            0.1
+            0
+            0
+            0
+            0
+            0
+        );
+    }
 }
 
 scatterModel    constantScatter;

tutorials/combustion/fireFoam/les/smallPoolFire3D/constant/radiationProperties

@@ -135,6 +135,61 @@ greyMeanAbsorptionEmissionCoeffs
             0
         );
     }
+
+    O2
+    {
+        Tcommon         300;
+        invTemp         true;
+        Tlow            200;
+        Thigh           2500;
+
+        loTcoeffs
+        (
+            0
+            0
+            0
+            0
+            0
+            0
+        );
+        hiTcoeffs
+        (
+            0.1
+            0
+            0
+            0
+            0
+            0
+        );
+    }
+
+
+    N2
+    {
+        Tcommon         300;
+        invTemp         true;
+        Tlow            200;
+        Thigh           2500;
+
+        loTcoeffs
+        (
+            0
+            0
+            0
+            0
+            0
+            0
+        );
+        hiTcoeffs
+        (
+            0.1
+            0
+            0
+            0
+            0
+            0
+        );
+    }
 }
 
 scatterModel    constantScatter;