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Doxygen docs: Corrected doxyFilter to preserve line numbers
Also corrected many formatting errors in the comments in C and H files
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@ -27,7 +27,7 @@ Class
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Description
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Templated basic entry that holds a constant value.
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Usage - for entry <entryName> having the value <value>:
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Usage - for entry \<entryName\> having the value <value>:
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@verbatim
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<entryName> constant <value>
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@endverbatim
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@ -27,7 +27,7 @@ Class
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Description
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Templated table container data entry. Items are stored in a list of
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Tuple2's. First column is always stored as scalar entries. Data is read
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in the form, e.g. for an entry <entryName> that is (scalar, vector):
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in the form, e.g. for an entry \<entryName\> that is (scalar, vector):
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@verbatim
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<entryName> table
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@ -26,7 +26,7 @@ Class
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Description
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Polynomial container data entry for scalars. Items are stored in a list of
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Tuple2's. Data is input in the form, e.g. for an entry <entryName> that
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Tuple2's. Data is input in the form, e.g. for an entry \<entryName\> that
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describes y = x^2 + 2x^3
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@verbatim
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