ENH: parallel runTimeModifiable - master only

This commit is contained in:
mattijs
2010-11-16 12:41:44 +00:00
parent 57a443a183
commit b5dddd8980
13 changed files with 700 additions and 275 deletions

View File

@ -24,21 +24,63 @@ be quite a gain on large numbers of processors.
- all file monitoring is done by an instance of 'fileMonitor' in the Time
class. The fileMonitor class can be found in OSspecific. Default is
to use the (linux-specific) 'inotify' system calls.
If compiled with -DFOAM_USE_STAT it will revert to the current 'stat' system
calls.
class. The fileMonitor class can be found in OSspecific. It uses either
timestamps as before or the (linux-specific) 'inotify' system framework
(available only if compiled with -DFOAM_USE_INOTIFY).
- inotify does not need timestamps. There is no need for fileModificationSkew
- the monitoring can be done in one of four modes as set by
OptimisationSwitches::fileModificationChecking
- timeStamp : old behaviour : all nodes check the timestamp
- inotify : using inotify instead of timestamps
- timeStampMaster,inotifyMaster : only the master node checks the file
and only the master node reads it and distribute it to the
slaves. This makes runTimeModifiable possible on distributed
running (see below).
- distributed running:
- set fileModificationChecking to e.g. timeStampMaster
- decompose a case, e.g. cavity
- copy system and constant to processor0/
- put the all the processor* directories on the wanted nodes inside
the case directory. E.g.
- on master have /tmp/cavity/processor0
- on slaveN have /tmp/cavity/processorN
- so to reiterate:
- there is no need for cavity/constant or cavity/system, all the
dictionaries are only in processor0/constant or processor0/system
- the slave processor directories have no system directory and the
constant directory only contains the mesh.
- start the job in distributed mode by specifying the slave roots
(so one less than the number of processors) with
the -roots command line option:
mpirun -np 2 icoFoam -roots '("/tmp")' -parallel
- the alternative to the -roots option is to have a
cavity/system/decomposeParDict on the master with
distributed yes;
roots ("/tmp");
Details:
- timeStampMaster, inotifyMaster : this works only for IOdictionaries that
are READ_IF_MODIFIED. It means that slaves read exactly the same dictionary
as the master so cannot be used for dictionaries that contain e.g. mesh
specific information.
- inotify is a monitoring framework used to monitor changes in
lots of files (e.g. used in desktop searched like beagle). You specify
files to monitor and then get warned for any changes to these files.
It does not need timestamps. There is no need for fileModificationSkew
to allow for time differences. (there can still temporarily be a difference
in modified status between different processors due to nfs lagging)
in modified status between different processors due to nfs lagging). The big
problem is that it does not work over nfs3 (not sure about nfs4).
- fileMonitor stores two hashtables per file so there is a small overhead
adding and removing files from monitoring.
- if runTimeModifiable is false at start of run no files will get monitored,
however if runTimeModified gets set to false during the run the files
will still get monitored (though never reloaded). This is only a hypothetical
@ -46,7 +88,6 @@ problem in that the kernel still stores events for the monitored files. However
inotify is very efficient - e.g. it gets used to track changes on file systems
for desktop search engines.
- in the old system one could call modified() on any object and get
and uptodate state. In the new system it will return the state from
the last runTime++ (which if it triggered any re-reads will have reset the