Merge branch 'master' of /home/hunt2/OpenFOAM/OpenFOAM-dev

src/Allwmake

@@ -2,7 +2,8 @@
 cd ${0%/*} || exit 1    # run from this directory
 set -x
 
-( cd OpenFOAM && wmakeLnInclude . )
+wmakeLnInclude -f OpenFOAM
+wmakeLnInclude -f OSspecific/$WM_OS
 ( cd Pstream && ./Allwmake )
 
 wmake libo  OSspecific/$WM_OS

src/thermophysicalModels/barotropicCompressibilityModel/Chung/Chung.C

@@ -31,13 +31,16 @@ License
 
 namespace Foam
 {
-namespace compressibilityModels
+    namespace compressibilityModels
-{
+    {
-
+        defineTypeNameAndDebug(Chung, 0);
-defineTypeNameAndDebug(Chung, 0);
+        addToRunTimeSelectionTable
-addToRunTimeSelectionTable(barotropicCompressibilityModel, Chung, dictionary);
+        (
-
+            barotropicCompressibilityModel,
-}
+            Chung,
+            dictionary
+        );
+    }
 }
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
@@ -45,10 +48,11 @@ addToRunTimeSelectionTable(barotropicCompressibilityModel, Chung, dictionary);
 Foam::compressibilityModels::Chung::Chung
 (
     const dictionary& compressibilityProperties,
-    const volScalarField& gamma
+    const volScalarField& gamma,
+    const word& psiName
 )
 :
-    barotropicCompressibilityModel(compressibilityProperties, gamma),
+    barotropicCompressibilityModel(compressibilityProperties, gamma, psiName),
     psiv_(compressibilityProperties_.lookup("psiv")),
     psil_(compressibilityProperties_.lookup("psil")),
     rhovSat_(compressibilityProperties_.lookup("rhovSat")),

src/thermophysicalModels/barotropicCompressibilityModel/Chung/Chung.H

@@ -75,7 +75,8 @@ public:
         Chung
         (
             const dictionary& compressibilityProperties,
-            const volScalarField& gamma
+            const volScalarField& gamma,
+            const word& psiName = "psi"
         );
 
 

src/thermophysicalModels/barotropicCompressibilityModel/Wallis/Wallis.C

@@ -31,13 +31,16 @@ License
 
 namespace Foam
 {
-namespace compressibilityModels
+    namespace compressibilityModels
-{
+    {
-
+        defineTypeNameAndDebug(Wallis, 0);
-defineTypeNameAndDebug(Wallis, 0);
+        addToRunTimeSelectionTable
-addToRunTimeSelectionTable(barotropicCompressibilityModel, Wallis, dictionary);
+        (
-
+            barotropicCompressibilityModel,
-}
+            Wallis,
+            dictionary
+        );
+    }
 }
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
@@ -45,10 +48,11 @@ addToRunTimeSelectionTable(barotropicCompressibilityModel, Wallis, dictionary);
 Foam::compressibilityModels::Wallis::Wallis
 (
     const dictionary& compressibilityProperties,
-    const volScalarField& gamma
+    const volScalarField& gamma,
+    const word& psiName
 )
 :
-    barotropicCompressibilityModel(compressibilityProperties, gamma),
+    barotropicCompressibilityModel(compressibilityProperties, gamma, psiName),
     psiv_(compressibilityProperties_.lookup("psiv")),
     psil_(compressibilityProperties_.lookup("psil")),
     rhovSat_(compressibilityProperties_.lookup("rhovSat")),
@@ -62,8 +66,9 @@ Foam::compressibilityModels::Wallis::Wallis
 
 void Foam::compressibilityModels::Wallis::correct()
 {
-    psi_ = (gamma_*rhovSat_ + (scalar(1) - gamma_)*rholSat_)
+    psi_ =
-         *(gamma_*psiv_/rhovSat_ + (scalar(1) - gamma_)*psil_/rholSat_);
+        (gamma_*rhovSat_ + (scalar(1) - gamma_)*rholSat_)
+       *(gamma_*psiv_/rhovSat_ + (scalar(1) - gamma_)*psil_/rholSat_);
 }
 
 

src/thermophysicalModels/barotropicCompressibilityModel/Wallis/Wallis.H

@@ -75,7 +75,8 @@ public:
         Wallis
         (
             const dictionary& compressibilityProperties,
-            const volScalarField& gamma
+            const volScalarField& gamma,
+            const word& psiName = "psi"
         );
 
 

src/thermophysicalModels/barotropicCompressibilityModel/barotropicCompressibilityModel/barotropicCompressibilityModel.C

@@ -42,7 +42,8 @@ namespace Foam
 Foam::barotropicCompressibilityModel::barotropicCompressibilityModel
 (
     const dictionary& compressibilityProperties,
-    const volScalarField& gamma
+    const volScalarField& gamma,
+    const word& psiName
 )
 :
     compressibilityProperties_(compressibilityProperties),
@@ -50,12 +51,12 @@ Foam::barotropicCompressibilityModel::barotropicCompressibilityModel
     (
         IOobject
         (
-            "psi",
+            psiName,
             gamma.mesh().time().timeName(),
             gamma.mesh()
         ),
         gamma.mesh(),
-        dimensionedScalar("psi", dimensionSet(0, -2, 2, 0, 0), 0)
+        dimensionedScalar(psiName, dimensionSet(0, -2, 2, 0, 0), 0)
     ),
     gamma_(gamma)
 {}

src/thermophysicalModels/barotropicCompressibilityModel/barotropicCompressibilityModel/barotropicCompressibilityModel.H

@@ -97,9 +97,10 @@ public:
             dictionary,
             (
                 const dictionary& compressibilityProperties,
-                const volScalarField& gamma
+                const volScalarField& gamma,
+                const word& psiName
             ),
-            (compressibilityProperties, gamma)
+            (compressibilityProperties, gamma, psiName)
         );
 
 
@@ -109,7 +110,8 @@ public:
         static autoPtr<barotropicCompressibilityModel> New
         (
             const dictionary& compressibilityProperties,
-            const volScalarField& gamma
+            const volScalarField& gamma,
+            const word& psiName = "psi"
         );
 
 
@@ -119,7 +121,8 @@ public:
         barotropicCompressibilityModel
         (
             const dictionary& compressibilityProperties,
-            const volScalarField& gamma
+            const volScalarField& gamma,
+            const word& psiName = "psi"
         );
 
 

src/thermophysicalModels/barotropicCompressibilityModel/barotropicCompressibilityModel/newBarotropicCompressibilityModel.C

@@ -32,7 +32,8 @@ Foam::autoPtr<Foam::barotropicCompressibilityModel>
 Foam::barotropicCompressibilityModel::New
 (
     const dictionary& compressibilityProperties,
-    const volScalarField& gamma
+    const volScalarField& gamma,
+    const word& psiName
 )
 {
     word bcModelTypeName
@@ -60,7 +61,7 @@ Foam::barotropicCompressibilityModel::New
 
     return autoPtr<barotropicCompressibilityModel>
     (
-        cstrIter()(compressibilityProperties, gamma)
+        cstrIter()(compressibilityProperties, gamma, psiName)
     );
 }
 

src/thermophysicalModels/barotropicCompressibilityModel/linear/linear.C

@@ -31,13 +31,16 @@ License
 
 namespace Foam
 {
-namespace compressibilityModels
+    namespace compressibilityModels
-{
+    {
-
+        defineTypeNameAndDebug(linear, 0);
-defineTypeNameAndDebug(linear, 0);
+        addToRunTimeSelectionTable
-addToRunTimeSelectionTable(barotropicCompressibilityModel, linear, dictionary);
+        (
-
+            barotropicCompressibilityModel,
-}
+            linear,
+            dictionary
+        );
+    }
 }
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
@@ -45,10 +48,11 @@ addToRunTimeSelectionTable(barotropicCompressibilityModel, linear, dictionary);
 Foam::compressibilityModels::linear::linear
 (
     const dictionary& compressibilityProperties,
-    const volScalarField& gamma
+    const volScalarField& gamma,
+    const word& psiName
 )
 :
-    barotropicCompressibilityModel(compressibilityProperties, gamma),
+    barotropicCompressibilityModel(compressibilityProperties, gamma, psiName),
     psiv_(compressibilityProperties_.lookup("psiv")),
     psil_(compressibilityProperties_.lookup("psil"))
 {

src/thermophysicalModels/barotropicCompressibilityModel/linear/linear.H

@@ -72,7 +72,8 @@ public:
         linear
         (
             const dictionary& compressibilityProperties,
-            const volScalarField& gamma
+            const volScalarField& gamma,
+            const word& psiName = "psi"
         );
 
 

src/triSurface/triSurface/interfaces/NAS/readNAS.C

@@ -23,10 +23,16 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Nastran surface reader. Does Ansa $ANSA_NAME extension to get name
+    Nastran surface reader.
-    of patch. Handles Ansa coordinates like:
 
+    - Uses the Ansa "$ANSA_NAME" or the Hypermesh "$HMNAME COMP" extensions
+      to obtain patch names.
+    - Handles Nastran short and long formats, but not free format.
+    - Properly handles the Nastran compact floating point notation: \n
+    @verbatim
         GRID          28        10.20269-.030265-2.358-8
+    @endverbatim
+
 
 \*---------------------------------------------------------------------------*/
 
@@ -49,13 +55,13 @@ static scalar parseNASCoord(const string& s)
     if (expSign != string::npos && expSign > 0 && !isspace(s[expSign-1]))
     {
         scalar mantissa = readScalar(IStringStream(s.substr(0, expSign))());
-        scalar exp = readScalar(IStringStream(s.substr(expSign+1))());
+        scalar exponent = readScalar(IStringStream(s.substr(expSign+1))());
 
         if (s[expSign] == '-')
         {
-            exp = -exp;
+            exponent = -exponent;
         }
-        return mantissa*pow(10, exp);
+        return mantissa*pow(10, exponent);
     }
     else
     {
@@ -64,14 +70,14 @@ static scalar parseNASCoord(const string& s)
 }
 
 
-bool triSurface::readNAS(const fileName& OBJfileName)
+bool triSurface::readNAS(const fileName& fName)
 {
-    IFstream OBJfile(OBJfileName);
+    IFstream is(fName);
 
-    if (!OBJfile.good())
+    if (!is.good())
     {
         FatalErrorIn("triSurface::readNAS(const fileName&)")
-            << "Cannot read file " << OBJfileName
+            << "Cannot read file " << fName
             << exit(FatalError);
     }
 
@@ -90,17 +96,17 @@ bool triSurface::readNAS(const fileName& OBJfileName)
     // Ansa tags. Denoted by $ANSA_NAME. These will appear just before the
     // first use of a type. We read them and store the pshell types which
     // are used to name the patches.
-    label ansaID = -1;
+    label ansaId = -1;
     word ansaType;
     string ansaName;
 
-    // Done warnings per unrecognized command
+    // A single warning per unrecognized command
     HashSet<word> unhandledCmd;
 
-    while (OBJfile.good())
+    while (is.good())
     {
         string line;
-        OBJfile.getLine(line);
+        is.getLine(line);
 
         // Ansa extension
         if (line.substr(0, 10) == "$ANSA_NAME")
@@ -116,14 +122,14 @@ bool triSurface::readNAS(const fileName& OBJfileName)
              && sem2 != string::npos
             )
             {
-                ansaID = readLabel
+                ansaId = readLabel
                 (
                     IStringStream(line.substr(sem0+1, sem1-sem0-1))()
                 );
                 ansaType = line.substr(sem1+1, sem2-sem1-1);
 
                 string nameString;
-                OBJfile.getLine(ansaName);
+                is.getLine(ansaName);
                 if (ansaName[ansaName.size()-1] == '\r')
                 {
                     ansaName = ansaName.substr(1, ansaName.size()-2);
@@ -132,13 +138,37 @@ bool triSurface::readNAS(const fileName& OBJfileName)
                 {
                     ansaName = ansaName.substr(1, ansaName.size()-1);
                 }
-                //Pout<< "ANSA tag for NastranID:" << ansaID
+
-                //    << " of type " << ansaType
+                // Info<< "ANSA tag for NastranID:" << ansaId
-                //    << " name " << ansaName << endl;
+                //     << " of type " << ansaType
+                //     << " name " << ansaName << endl;
             }
         }
 
 
+        // Hypermesh extension
+        // $HMNAME COMP                   1"partName"
+        if
+        (
+            line.substr(0, 12) == "$HMNAME COMP"
+         && line.find ('"') != string::npos
+        )
+        {
+            label groupId = readLabel
+            (
+                IStringStream(line.substr(16, 16))()
+            );
+
+            IStringStream lineStream(line.substr(32));
+
+            string rawName;
+            lineStream >> rawName;
+
+            groupToName.insert(groupId, string::validate<word>(rawName));
+            Info<< "group " << groupId << " => " << rawName << endl;
+        }
+
+
         if (line.size() == 0 || line[0] == '$')
         {
             // Skip empty or comment
@@ -153,7 +183,7 @@ bool triSurface::readNAS(const fileName& OBJfileName)
             while (true)
             {
                 string buf;
-                OBJfile.getLine(buf);
+                is.getLine(buf);
 
                 if (buf.size() > 72 && buf[72]=='+')
                 {
@@ -174,26 +204,21 @@ bool triSurface::readNAS(const fileName& OBJfileName)
 
         if (cmd == "CTRIA3")
         {
-            //label index, group, a, b, c;
+            label groupId = readLabel(IStringStream(line.substr(16,8))());
-            //lineStream >> index >> group >> a >> b >> c;
-            label group = readLabel(IStringStream(line.substr(16,8))());
             label a = readLabel(IStringStream(line.substr(24,8))());
             label b = readLabel(IStringStream(line.substr(32,8))());
             label c = readLabel(IStringStream(line.substr(40,8))());
 
 
             // Convert group into patch
-            Map<label>::const_iterator iter = groupToPatch.find(group);
+            Map<label>::const_iterator iter = groupToPatch.find(groupId);
 
             label patchI;
             if (iter == groupToPatch.end())
             {
                 patchI = nPatches++;
-
+                groupToPatch.insert(groupId, patchI);
-                Pout<< "Allocating Foam patch " << patchI
+                Info<< "patch " << patchI << " => group " << groupId << endl;
-                    << " for group " << group << endl;
-
-                groupToPatch.insert(group, patchI);
             }
             else
             {
@@ -204,26 +229,21 @@ bool triSurface::readNAS(const fileName& OBJfileName)
         }
         else if (cmd == "CQUAD4")
         {
-            //label index, group, a, b, c, d;
+            label groupId = readLabel(IStringStream(line.substr(16,8))());
-            //lineStream >> index >> group >> a >> b >> c >> d;
-            label group = readLabel(IStringStream(line.substr(16,8))());
             label a = readLabel(IStringStream(line.substr(24,8))());
             label b = readLabel(IStringStream(line.substr(32,8))());
             label c = readLabel(IStringStream(line.substr(40,8))());
             label d = readLabel(IStringStream(line.substr(48,8))());
 
             // Convert group into patch
-            Map<label>::const_iterator iter = groupToPatch.find(group);
+            Map<label>::const_iterator iter = groupToPatch.find(groupId);
 
             label patchI;
             if (iter == groupToPatch.end())
             {
                 patchI = nPatches++;
-
+                groupToPatch.insert(groupId, patchI);
-                Pout<< "Allocating Foam patch " << patchI
+                Info<< "patch " << patchI << " => group " << groupId << endl;
-                    << " for group " << group << endl;
-
-                groupToPatch.insert(group, patchI);
             }
             else
             {
@@ -235,66 +255,56 @@ bool triSurface::readNAS(const fileName& OBJfileName)
         }
         else if (cmd == "PSHELL")
         {
-            // Read shell type since gives patchnames.
+            // Read shell type since group gives patchnames
-            //label group;
+            label groupId = readLabel(IStringStream(line.substr(8,8))());
-            //lineStream >> group;
+            if (groupId == ansaId && ansaType == "PSHELL")
-            label group = readLabel(IStringStream(line.substr(8,8))());
-
-            if (group == ansaID && ansaType == "PSHELL")
             {
-                Pout<< "Found name " << ansaName << " for group "
+                groupToName.insert(groupId, string::validate<word>(ansaName));
-                    << group << endl;
+                Info<< "group " << groupId << " => " << ansaName << endl;
-                groupToName.insert(group, string::validate<word>(ansaName));
             }
         }
         else if (cmd == "GRID")
         {
-            //label index;
-            //lineStream >> index;
             label index = readLabel(IStringStream(line.substr(8,8))());
-            indices.append(index);
-
             scalar x = parseNASCoord(line.substr(24, 8));
             scalar y = parseNASCoord(line.substr(32, 8));
             scalar z = parseNASCoord(line.substr(40, 8));
+
+            indices.append(index);
             points.append(point(x, y, z));
         }
         else if (cmd == "GRID*")
         {
-            // Assume on two lines with '*' continuation symbol on start of
+            // Long format is on two lines with '*' continuation symbol
-            // second line. (comes out of Tgrid. Typical line (spaces truncated)
+            // on start of second line.
+            // Typical line (spaces compacted)
             // GRID*      126   0 -5.55999875E+02 -5.68730474E+02
             // *         2.14897901E+02
-            string line2;
+
-            OBJfile.getLine(line2);
+            label index = readLabel(IStringStream(line.substr(8,16))());
-            if (line2[0] != '*')
+            scalar x = parseNASCoord(line.substr(40, 16));
+            scalar y = parseNASCoord(line.substr(56, 16));
+
+            is.getLine(line);
+            if (line[0] != '*')
             {
                 FatalErrorIn("triSurface::readNAS(const fileName&)")
                     << "Expected continuation symbol '*' when reading GRID*"
-                    << " (double precision coordinate) output by Tgrid" << nl
+                    << " (double precision coordinate) output" << nl
-                    << "Read:" << line2 << nl
+                    << "Read:" << line << nl
-                    << "File:" << OBJfile.name()
+                    << "File:" << is.name()
-                    << " line:" << OBJfile.lineNumber()
+                    << " line:" << is.lineNumber()
                     << exit(FatalError);
             }
-            IStringStream lineStream(line.substr(10) + line2.substr(1));
+            scalar z = parseNASCoord(line.substr(8, 16));
 
-            label index;
-            lineStream >> index;
             indices.append(index);
-
-            readScalar(lineStream); // What is this field?
-            scalar x = readScalar(lineStream);
-            scalar y = readScalar(lineStream);
-            scalar z = readScalar(lineStream);
             points.append(point(x, y, z));
         }
         else if (unhandledCmd.insert(cmd))
         {
             Info<< "Unhandled Nastran command " << line << nl
-                << "File:" << OBJfile.name()
+                << "File:" << is.name() << " line:" << is.lineNumber() << endl;
-                << " line:" << OBJfile.lineNumber()
-                << endl;
         }
     }
 
@@ -303,7 +313,7 @@ bool triSurface::readNAS(const fileName& OBJfileName)
     faces.shrink();
 
 
-    Pout<< "Read triangles:" << faces.size() << " points:" << points.size()
+    Info<< "Read triangles:" << faces.size() << " points:" << points.size()
         << endl;
 
     {
@@ -314,7 +324,7 @@ bool triSurface::readNAS(const fileName& OBJfileName)
             indexToPoint.insert(indices[i], i);
         }
 
-        // Relabel triangles
+        // Relabel faces
         forAll(faces, i)
         {
             labelledTri& f = faces[i];
@@ -341,7 +351,7 @@ bool triSurface::readNAS(const fileName& OBJfileName)
         );
     }
 
-    Pout<< "patches:" << patches << endl;
+    Info<< "patches:" << patches << endl;
 
 
     // Transfer DynamicLists to straight ones.

src/turbulenceModels/LES/Allwmake

@@ -2,8 +2,9 @@
 cd ${0%/*} || exit 1    # run from this directory
 set -x
 
+wmakeLnInclude -f incompressible
+
 wmake libso LESfilters
-wmakeLnInclude incompressible
 wmake libso LESdeltas
 wmake libso incompressible
 wmake libso compressible

src/turbulenceModels/LES/compressible/Make/files

@@ -14,6 +14,6 @@ SpalartAllmaras/SpalartAllmaras.C
 wallFunctions=derivedFvPatchFields/wallFunctions
 
 muSgsWallFunctions=$(wallFunctions)/muSgsWallFunctions
-$(muSgsWallFunctions)/muSgsWallFunction/muSgsWallFunctionFvPatchScalarField.C
+$(muSgsWallFunctions)/muSgsSpalartAllmarasWallFunction/muSgsSpalartAllmarasWallFunctionFvPatchScalarField.C
 
 LIB = $(FOAM_LIBBIN)/libcompressibleLESModels

src/turbulenceModels/LES/compressible/Make/options

@@ -1,6 +1,6 @@
 EXE_INC = \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
-	-I$(LIB_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
     -I../LESdeltas/lnInclude \
     -I../LESfilters/lnInclude \
     -I$(LIB_SRC)/thermophysicalModels/basic/lnInclude

src/turbulenceModels/LES/compressible/derivedFvPatchFields/wallFunctions/muSgsWallFunctions/muSgsSpalartAllmarasWallFunction/muSgsSpalartAllmarasWallFunctionFvPatchScalarField.C

@@ -24,7 +24,7 @@ License
 
 \*---------------------------------------------------------------------------*/
 
-#include "muSgsWallFunctionFvPatchScalarField.H"
+#include "muSgsSpalartAllmarasWallFunctionFvPatchScalarField.H"
 #include "LESModel.H"
 #include "fvPatchFieldMapper.H"
 #include "volFields.H"
@@ -41,7 +41,8 @@ namespace LESModels
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
     const fvPatch& p,
     const DimensionedField<scalar, volMesh>& iF
@@ -51,9 +52,10 @@ muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
 {}
 
 
-muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
-    const muSgsWallFunctionFvPatchScalarField& ptf,
+    const muSgsSpalartAllmarasWallFunctionFvPatchScalarField& ptf,
     const fvPatch& p,
     const DimensionedField<scalar, volMesh>& iF,
     const fvPatchFieldMapper& mapper
@@ -63,7 +65,8 @@ muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
 {}
 
 
-muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
     const fvPatch& p,
     const DimensionedField<scalar, volMesh>& iF,
@@ -74,7 +77,8 @@ muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
 {}
 
 
-muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
     const fvPatch& p,
     const DimensionedField<scalar, volMesh>& iF,
@@ -85,18 +89,20 @@ muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
 {}
 
 
-muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
-    const muSgsWallFunctionFvPatchScalarField& tppsf
+    const muSgsSpalartAllmarasWallFunctionFvPatchScalarField& tppsf
 )
 :
     fixedValueFvPatchScalarField(tppsf)
 {}
 
 
-muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+muSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
-    const muSgsWallFunctionFvPatchScalarField& tppsf,
+    const muSgsSpalartAllmarasWallFunctionFvPatchScalarField& tppsf,
     const DimensionedField<scalar, volMesh>& iF
 )
 :
@@ -106,7 +112,7 @@ muSgsWallFunctionFvPatchScalarField::muSgsWallFunctionFvPatchScalarField
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-void muSgsWallFunctionFvPatchScalarField::evaluate
+void muSgsSpalartAllmarasWallFunctionFvPatchScalarField::evaluate
 (
     const Pstream::commsTypes
 )
@@ -184,7 +190,11 @@ void muSgsWallFunctionFvPatchScalarField::evaluate
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-makePatchTypeField(fvPatchScalarField, muSgsWallFunctionFvPatchScalarField);
+makePatchTypeField
+(
+    fvPatchScalarField,
+    muSgsSpalartAllmarasWallFunctionFvPatchScalarField
+);
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 

src/turbulenceModels/LES/compressible/derivedFvPatchFields/wallFunctions/muSgsWallFunctions/muSgsSpalartAllmarasWallFunction/muSgsSpalartAllmarasWallFunctionFvPatchScalarField.H

@@ -23,18 +23,19 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::compressible::LESModels::muSgsWallFunctionFvPatchScalarField
+    Foam::compressible::LESModels::
+        muSgsSpalartAllmarasWallFunctionFvPatchScalarField
 
 Description
-    wall function boundary condition for compressible flows
+    Spalart Allmaas wall function boundary condition for compressible flows
 
 SourceFiles
-    muSgsWallFunctionFvPatchScalarField.C
+    muSgsSpalartAllmarasWallFunctionFvPatchScalarField.C
 
 \*---------------------------------------------------------------------------*/
 
-#ifndef muSgsWallFunctionFvPatchScalarField_H
+#ifndef muSgsSpalartAllmarasWallFunctionFvPatchScalarField_H
-#define muSgsWallFunctionFvPatchScalarField_H
+#define muSgsSpalartAllmarasWallFunctionFvPatchScalarField_H
 
 #include "fixedValueFvPatchFields.H"
 
@@ -48,10 +49,10 @@ namespace LESModels
 {
 
 /*---------------------------------------------------------------------------*\
-                    Class muSgsWallFunctionFvPatch Declaration
+     Class muSgsSpalartAllmarasWallFunctionFvPatchScalarField Declaration
 \*---------------------------------------------------------------------------*/
 
-class muSgsWallFunctionFvPatchScalarField
+class muSgsSpalartAllmarasWallFunctionFvPatchScalarField
 :
     public fixedValueFvPatchScalarField
 {
@@ -61,20 +62,20 @@ class muSgsWallFunctionFvPatchScalarField
 public:
 
     //- Runtime type information
-    TypeName("muSgsWallFunction");
+    TypeName("muSgsSpalartAllmarasWallFunction");
 
 
     // Constructors
 
         //- Construct from patch and internal field
-        muSgsWallFunctionFvPatchScalarField
+        muSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
             const fvPatch&,
             const DimensionedField<scalar, volMesh>&
         );
 
         //- Construct from patch, internal field and Istream
-        muSgsWallFunctionFvPatchScalarField
+        muSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
             const fvPatch&,
             const DimensionedField<scalar, volMesh>&,
@@ -82,27 +83,28 @@ public:
         );
 
         //- Construct from patch, internal field and dictionary
-        muSgsWallFunctionFvPatchScalarField
+        muSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
             const fvPatch&,
             const DimensionedField<scalar, volMesh>&,
             const dictionary&
         );
 
-        //- Construct by mapping given muSgsWallFunctionFvPatchScalarField
+        //- Construct by mapping given
+        //  muSgsSpalartAllmarasWallFunctionFvPatchScalarField
         //  onto a new patch
-        muSgsWallFunctionFvPatchScalarField
+        muSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
-            const muSgsWallFunctionFvPatchScalarField&,
+            const muSgsSpalartAllmarasWallFunctionFvPatchScalarField&,
             const fvPatch&,
             const DimensionedField<scalar, volMesh>&,
             const fvPatchFieldMapper&
         );
 
         //- Construct as copy
-        muSgsWallFunctionFvPatchScalarField
+        muSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
-            const muSgsWallFunctionFvPatchScalarField&
+            const muSgsSpalartAllmarasWallFunctionFvPatchScalarField&
         );
 
         //- Construct and return a clone
@@ -110,14 +112,14 @@ public:
         {
             return tmp<fvPatchScalarField>
             (
-                new muSgsWallFunctionFvPatchScalarField(*this)
+                new muSgsSpalartAllmarasWallFunctionFvPatchScalarField(*this)
             );
         }
 
         //- Construct as copy setting internal field reference
-        muSgsWallFunctionFvPatchScalarField
+        muSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
-            const muSgsWallFunctionFvPatchScalarField&,
+            const muSgsSpalartAllmarasWallFunctionFvPatchScalarField&,
             const DimensionedField<scalar, volMesh>&
         );
 
@@ -129,7 +131,11 @@ public:
         {
             return tmp<fvPatchScalarField>
             (
-                new muSgsWallFunctionFvPatchScalarField(*this, iF)
+                new muSgsSpalartAllmarasWallFunctionFvPatchScalarField
+                (
+                    *this,
+                    iF
+                )
             );
         }
 

src/turbulenceModels/LES/incompressible/Make/files

@@ -29,7 +29,7 @@ dynMixedSmagorinsky/dynMixedSmagorinsky.C
 wallFunctions=derivedFvPatchFields/wallFunctions
 
 nuSgsWallFunctions=$(wallFunctions)/nuSgsWallFunctions
-$(nuSgsWallFunctions)/nuSgsWallFunction/nuSgsWallFunctionFvPatchScalarField.C
+$(nuSgsWallFunctions)/nuSgsSpalartAllmarasWallFunction/nuSgsSpalartAllmarasWallFunctionFvPatchScalarField.C
 
 
 LIB = $(FOAM_LIBBIN)/libincompressibleLESModels

src/turbulenceModels/LES/incompressible/derivedFvPatchFields/wallFunctions/nuSgsWallFunctions/nuSgsSpalartAllmarasWallFunction/nuSgsSpalartAllmarasWallFunctionFvPatchScalarField.C

@@ -24,7 +24,7 @@ License
 
 \*---------------------------------------------------------------------------*/
 
-#include "nuSgsWallFunctionFvPatchScalarField.H"
+#include "nuSgsSpalartAllmarasWallFunctionFvPatchScalarField.H"
 #include "LESModel.H"
 #include "fvPatchFieldMapper.H"
 #include "volFields.H"
@@ -41,7 +41,8 @@ namespace LESModels
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-nuSgsWallFunctionFvPatchScalarField::nuSgsWallFunctionFvPatchScalarField
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
     const fvPatch& p,
     const DimensionedField<scalar, volMesh>& iF
@@ -51,9 +52,10 @@ nuSgsWallFunctionFvPatchScalarField::nuSgsWallFunctionFvPatchScalarField
 {}
 
 
-nuSgsWallFunctionFvPatchScalarField::nuSgsWallFunctionFvPatchScalarField
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
-    const nuSgsWallFunctionFvPatchScalarField& ptf,
+    const nuSgsSpalartAllmarasWallFunctionFvPatchScalarField& ptf,
     const fvPatch& p,
     const DimensionedField<scalar, volMesh>& iF,
     const fvPatchFieldMapper& mapper
@@ -63,7 +65,8 @@ nuSgsWallFunctionFvPatchScalarField::nuSgsWallFunctionFvPatchScalarField
 {}
 
 
-nuSgsWallFunctionFvPatchScalarField::nuSgsWallFunctionFvPatchScalarField
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
     const fvPatch& p,
     const DimensionedField<scalar, volMesh>& iF,
@@ -74,18 +77,20 @@ nuSgsWallFunctionFvPatchScalarField::nuSgsWallFunctionFvPatchScalarField
 {}
 
 
-nuSgsWallFunctionFvPatchScalarField::nuSgsWallFunctionFvPatchScalarField
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
-    const nuSgsWallFunctionFvPatchScalarField& tppsf
+    const nuSgsSpalartAllmarasWallFunctionFvPatchScalarField& tppsf
 )
 :
     fixedValueFvPatchScalarField(tppsf)
 {}
 
 
-nuSgsWallFunctionFvPatchScalarField::nuSgsWallFunctionFvPatchScalarField
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField::
+nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
 (
-    const nuSgsWallFunctionFvPatchScalarField& tppsf,
+    const nuSgsSpalartAllmarasWallFunctionFvPatchScalarField& tppsf,
     const DimensionedField<scalar, volMesh>& iF
 )
 :
@@ -95,7 +100,7 @@ nuSgsWallFunctionFvPatchScalarField::nuSgsWallFunctionFvPatchScalarField
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-void nuSgsWallFunctionFvPatchScalarField::evaluate
+void nuSgsSpalartAllmarasWallFunctionFvPatchScalarField::evaluate
 (
     const Pstream::commsTypes
 )
@@ -166,7 +171,11 @@ void nuSgsWallFunctionFvPatchScalarField::evaluate
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-makePatchTypeField(fvPatchScalarField, nuSgsWallFunctionFvPatchScalarField);
+makePatchTypeField
+(
+    fvPatchScalarField,
+    nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
+);
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 

src/turbulenceModels/LES/incompressible/derivedFvPatchFields/wallFunctions/nuSgsWallFunctions/nuSgsSpalartAllmarasWallFunction/nuSgsSpalartAllmarasWallFunctionFvPatchScalarField.H

@@ -23,18 +23,19 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LESModels::nuSgsWallFunctionFvPatchScalarField
+    Foam::incompressible::LESModels::
+        nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
 
 Description
-    wall function boundary condition for incompressible flows
+    Spalart Allmaras wall function boundary condition for incompressible flows
 
 SourceFiles
-    nuSgsWallFunctionFvPatchScalarField.C
+    nuSgsSpalartAllmarasWallFunctionFvPatchScalarField.C
 
 \*---------------------------------------------------------------------------*/
 
-#ifndef nuSgsWallFunctionFvPatchScalarField_H
+#ifndef nuSgsSpalartAllmarasWallFunctionFvPatchScalarField_H
-#define nuSgsWallFunctionFvPatchScalarField_H
+#define nuSgsSpalartAllmarasWallFunctionFvPatchScalarField_H
 
 #include "fixedValueFvPatchFields.H"
 
@@ -48,10 +49,10 @@ namespace LESModels
 {
 
 /*---------------------------------------------------------------------------*\
-                    Class nuSgsWallFunctionFvPatch Declaration
+     Class nuSgsSpalartAllmarasWallFunctionFvPatchScalarField Declaration
 \*---------------------------------------------------------------------------*/
 
-class nuSgsWallFunctionFvPatchScalarField
+class nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
 :
     public fixedValueFvPatchScalarField
 {
@@ -61,40 +62,41 @@ class nuSgsWallFunctionFvPatchScalarField
 public:
 
     //- Runtime type information
-    TypeName("nuSgsWallFunction");
+    TypeName("nuSgsSpalartAllmarasWallFunction");
 
 
     // Constructors
 
         //- Construct from patch and internal field
-        nuSgsWallFunctionFvPatchScalarField
+        nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
             const fvPatch&,
             const DimensionedField<scalar, volMesh>&
         );
 
         //- Construct from patch, internal field and dictionary
-        nuSgsWallFunctionFvPatchScalarField
+        nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
             const fvPatch&,
             const DimensionedField<scalar, volMesh>&,
             const dictionary&
         );
 
-        //- Construct by mapping given nuSgsWallFunctionFvPatchScalarField
+        //- Construct by mapping given
+        //  nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
         //  onto a new patch
-        nuSgsWallFunctionFvPatchScalarField
+        nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
-            const nuSgsWallFunctionFvPatchScalarField&,
+            const nuSgsSpalartAllmarasWallFunctionFvPatchScalarField&,
             const fvPatch&,
             const DimensionedField<scalar, volMesh>&,
             const fvPatchFieldMapper&
         );
 
         //- Construct as copy
-        nuSgsWallFunctionFvPatchScalarField
+        nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
-            const nuSgsWallFunctionFvPatchScalarField&
+            const nuSgsSpalartAllmarasWallFunctionFvPatchScalarField&
         );
 
         //- Construct and return a clone
@@ -102,14 +104,14 @@ public:
         {
             return tmp<fvPatchScalarField>
             (
-                new nuSgsWallFunctionFvPatchScalarField(*this)
+                new nuSgsSpalartAllmarasWallFunctionFvPatchScalarField(*this)
             );
         }
 
         //- Construct as copy setting internal field reference
-        nuSgsWallFunctionFvPatchScalarField
+        nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
         (
-            const nuSgsWallFunctionFvPatchScalarField&,
+            const nuSgsSpalartAllmarasWallFunctionFvPatchScalarField&,
             const DimensionedField<scalar, volMesh>&
         );
 
@@ -121,7 +123,11 @@ public:
         {
             return tmp<fvPatchScalarField>
             (
-                new nuSgsWallFunctionFvPatchScalarField(*this, iF)
+                new nuSgsSpalartAllmarasWallFunctionFvPatchScalarField
+                (
+                    *this,
+                    iF
+                )
             );
         }
 

tutorials/Allclean

@@ -32,15 +32,15 @@
 
 cd ${0%/*} || exit 1    # run from this directory
 
-echo "Cleaning backup files"
+echo "--------"
+echo "Cleaning tutorials ..."
+echo "Removing backup files"
 find . -type f \( -name "*~" -o -name "*.bak" \) -exec rm {} \;
 find . \( -name 'core' -o -name 'core.[1-9]*' \) -exec rm {} \;
 find . \( -name '*.pvs' -o -name '*.OpenFOAM' \) -exec rm {} \;
-rm logs > /dev/null 2>&1
+rm logs testLoopReport > /dev/null 2>&1
-rm testLoopReport > /dev/null 2>&1
-
-echo ""
 
 foamCleanTutorials cases
 
+echo "--------"
 # ----------------------------------------------------------------- end-of-file

tutorials/interDyMFoam/sloshingTank2D/constant/polyMesh/blockMeshDict.m4

@@ -15,8 +15,8 @@ FoamFile
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 // General m4 macros
 
-changecom(//)changequote([,])
+changecom(//)changequote([,]) dnl>
-define(calc, [esyscmd(perl -e 'use Math::Trig; use POSIX; printf ($1)')])
+define(calc, [esyscmd(perl -e 'use Math::Trig; print ($1)')]) dnl>
 define(VCOUNT, 0)
 define(vlabel, [[// ]Vertex $1 = VCOUNT define($1, VCOUNT)define([VCOUNT], incr(VCOUNT))])
 

tutorials/interDyMFoam/sloshingTank2D3DoF/constant/polyMesh/blockMeshDict.m4

@@ -15,8 +15,8 @@ FoamFile
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 // General m4 macros
 
-changecom(//)changequote([,])
+changecom(//)changequote([,]) dnl>
-define(calc, [esyscmd(perl -e 'use Math::Trig; use POSIX; print ($1)')])
+define(calc, [esyscmd(perl -e 'use Math::Trig; print ($1)')]) dnl>
 define(VCOUNT, 0)
 define(vlabel, [[// ]Vertex $1 = VCOUNT define($1, VCOUNT)define([VCOUNT], incr(VCOUNT))])
 

tutorials/interDyMFoam/sloshingTank3D/constant/polyMesh/blockMeshDict.m4

@@ -15,8 +15,8 @@ FoamFile
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 // General m4 macros
 
-changecom(//)changequote([,])
+changecom(//)changequote([,]) dnl>
-define(calc, [esyscmd(perl -e 'use Math::Trig; use POSIX; printf ($1)')])
+define(calc, [esyscmd(perl -e 'use Math::Trig; print ($1)')]) dnl>
 define(VCOUNT, 0)
 define(vlabel, [[// ]Vertex $1 = VCOUNT define($1, VCOUNT)define([VCOUNT], incr(VCOUNT))])
 

tutorials/interDyMFoam/sloshingTank3D3DoF/constant/polyMesh/blockMeshDict.m4

@@ -15,8 +15,8 @@ FoamFile
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 // General m4 macros
 
-changecom(//)changequote([,])
+changecom(//)changequote([,]) dnl>
-define(calc, [esyscmd(perl -e 'use Math::Trig; use POSIX; print ($1)')])
+define(calc, [esyscmd(perl -e 'use Math::Trig; print ($1)')]) dnl>
 define(VCOUNT, 0)
 define(vlabel, [[// ]Vertex $1 = VCOUNT define($1, VCOUNT)define([VCOUNT], incr(VCOUNT))])
 

tutorials/interDyMFoam/sloshingTank3D6DoF/constant/polyMesh/blockMeshDict.m4

@@ -15,8 +15,8 @@ FoamFile
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 // General m4 macros
 
-changecom(//)changequote([,])
+changecom(//)changequote([,]) dnl>
-define(calc, [esyscmd(perl -e 'use Math::Trig; use POSIX; print ($1)')])
+define(calc, [esyscmd(perl -e 'use Math::Trig; print ($1)')]) dnl>
 define(VCOUNT, 0)
 define(vlabel, [[// ]Vertex $1 = VCOUNT define($1, VCOUNT)define([VCOUNT], incr(VCOUNT))])
 

wmake/wcleanAll

@@ -39,20 +39,27 @@
 
 for dir in lib applications/bin
 do
+   echo "Removing $dir/"
    [ -d $dir ] && rm -rf $dir/*
 done
 
-( cd tutorials && ./Allclean )
+echo "Removing *~ backup files"
-
 find . -name '*~' -exec rm {} \;
+
+echo "Removing .dep files"
 find . -name '*.dep' -exec rm {} \;
 
+echo "Cleaning Make subdirectories"
 find `find . -depth \( -name "Make.[A-Za-z]*" -o -name "Make" \) -type d -print` -depth \( -type d ! -name "*Make.[A-Za-z]*" ! -name "*Make" \) -exec rm -rf {} \;
 
+echo "Removing lnInclude and intermediate directories"
 find . -depth -type d \( -name lnInclude -o -name ii_files -o -name Templates.DB \) -exec rm -rf {} \;
 
+echo "Removing misc files"
 find . \( -name exe -o -name log -o -name so_locations \) -exec rm {} \;
 
 # rm -rf src/mpich-${MPICH_VERSION}/platforms
 
+( cd tutorials && ./Allclean )
+
 #------------------------------------------------------------------------------

wmake/wcleanAlmostAll

@@ -24,11 +24,10 @@
 #     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 #
 # Script
-#     wmakeAlmostAll
+#     wcleanAlmostAll
 #
 # Description
-#     script that searches all the directories below the current for the
+#     as per wcleanAll, but retains "*~" backup files
-#     object file directories of all machines and then deletes them.
 #
 #------------------------------------------------------------------------------
 
@@ -39,18 +38,25 @@
 
 for dir in lib applications/bin
 do
+   echo "Removing $dir/"
    [ -d $dir ] && rm -rf $dir/*
 done
 
-( cd tutorials && ./Allclean )
+echo "Retaining *~ backup files"
+## find . -name '*~' -exec rm {} \;
 
-# find . -name '*~' -exec rm {} \;
+echo "Removing .dep files"
 find . -name '*.dep' -exec rm {} \;
 
-find `find . -depth \( -name "Make[.A-Za-z]*" -o -name "Make" \) -type d -print` -depth \( -type d ! -name "*Make[.A-Za-z]*" ! -name "*Make" \) -exec rm -r {} \;
+echo "Cleaning Make subdirectories"
+find `find . -depth \( -name "Make.[A-Za-z]*" -o -name "Make" \) -type d -print` -depth \( -type d ! -name "*Make.[A-Za-z]*" ! -name "*Make" \) -exec rm -rf {} \;
 
+echo "Removing lnInclude and intermediate directories"
 find . -depth -type d \( -name lnInclude -o -name ii_files -o -name Templates.DB \) -exec rm -rf {} \;
 
+echo "Removing misc files"
 find . \( -name exe -o -name log -o -name so_locations \) -exec rm {} \;
 
+( cd tutorials && ./Allclean )
+
 #------------------------------------------------------------------------------

wmake/wcleanLnIncludeAll

@@ -24,7 +24,7 @@
 #     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 #
 # Script
-#     wmakeLnInclude
+#     wcleanLnIncludeAll
 #
 # Description
 #     Delete all the lnInclude directories in the tree.

wmake/wmakeLnInclude

@@ -80,8 +80,18 @@ do
 done
 
 baseDir=$1
+# convert incorrect path/dir/lnInclude to something sensible
+while [ "${baseDir##*/}" = lnInclude ]
+do
+   baseDir="${baseDir%/*}"
+   if [ "$baseDir" = lnInclude ]
+   then
+      baseDir="."
+   fi
+done
 incDir=$baseDir/lnInclude
 
+
 if [ $# -eq 1 ]
 then
    lnOpt="-s"
@@ -89,7 +99,7 @@ elif [ $# -eq 2 ]
 then
    lnOpt="$2"
 else
-   usage "ERROR: wrong number of arguments"
+   usage "ERROR: incorrect number of arguments"
 fi
 
 
@@ -101,7 +111,6 @@ fi
 
 if [ -d $incDir ]
 then
-   # could change force to remove lnInclude first
    if [ ! "$forceUpdate" ]
    then
       # echo $Script: include directory $incDir already exists, exiting.
@@ -117,24 +126,34 @@ then
    exit 0
 fi
 
+cd $incDir || exit 1
+
 
 # Link include files
 # ~~~~~~~~~~~~~~~~~~
 echo $Script: linking include files to $incDir
-echo
-
-cd $incDir
-
-find .. $findOpt \
-    \( -name lnInclude -o -name -Make -o -name config \) -prune  \
- -o \( -name '*.[CHh]' -o -name '*.[ch]xx' -o -name '*.[ch]pp' -o -name '*.type' \)  \
- -a ! -name ".#*"     \
- -exec ln $lnOpt {} . \;
-
 
 #
-# remove any broken links
+# remove any broken links first (this helps when file locations have moved)
 #
 find -L . -type l -exec rm \{\} \;
 
+#
+# create links, avoid recreating links unless necessary
+#
+find .. $findOpt \
+    \( -name lnInclude -o -name Make -o -name config \) -prune \
+ -o \( -name '*.[CHh]' -o -name '*.[ch]xx' -o -name '*.[ch]pp' -o -name '*.type' \)  \
+ -a ! -name ".#*" \
+ -print | \
+   while read src
+   do
+      link=$(readlink ${src##*/})
+      if [ "$link" != "$src" ]
+      then
+         rm $link 2>/dev/null
+         ln $lnOpt $src .
+      fi
+   done
+
 #------------------------------------------------------------------------------