Merge branch 'master' of /home/dm4/OpenFOAM/OpenFOAM-dev

This commit is contained in:
andy
2013-06-17 16:48:37 +01:00
53 changed files with 1251 additions and 559 deletions

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@ -26,6 +26,10 @@ License
#include "DelaunayMesh.H"
#include "labelPair.H"
#include "PrintTable.H"
#include "pointIOField.H"
#include "scalarIOField.H"
#include "labelIOField.H"
#include "pointConversion.H"
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
@ -36,14 +40,121 @@ License
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
template<class Triangulation>
Foam::DelaunayMesh<Triangulation>::DelaunayMesh()
Foam::DelaunayMesh<Triangulation>::DelaunayMesh(const Time& runTime)
:
Triangulation(),
vertexCount_(0),
cellCount_(0)
cellCount_(0),
runTime_(runTime)
{}
template<class Triangulation>
Foam::DelaunayMesh<Triangulation>::DelaunayMesh
(
const Time& runTime,
const word& meshName
)
:
Triangulation(),
vertexCount_(0),
cellCount_(0),
runTime_(runTime)
{
pointIOField pts
(
IOobject
(
"points",
runTime.timeName(),
meshName/polyMesh::meshSubDir,
runTime,
IOobject::READ_IF_PRESENT,
IOobject::NO_WRITE
)
);
labelIOField types
(
IOobject
(
"types",
runTime.timeName(),
meshName,
runTime,
IOobject::READ_IF_PRESENT,
IOobject::NO_WRITE
)
);
labelIOField indices
(
IOobject
(
"indices",
runTime.timeName(),
meshName,
runTime,
IOobject::READ_IF_PRESENT,
IOobject::NO_WRITE
)
);
labelIOField processorIndices
(
IOobject
(
"processorIndices",
runTime.timeName(),
meshName,
runTime,
IOobject::READ_IF_PRESENT,
IOobject::NO_WRITE
)
);
if (pts.headerOk())
{
forAll(pts, ptI)
{
Vertex_handle vh = this->insert(toPoint<Point>(pts[ptI]));
if (indices.headerOk())
{
vh->index() = indices[ptI];
vertexCount()++;
}
else
{
vh->index() = getNewVertexIndex();
}
if (processorIndices.headerOk())
{
vh->procIndex() = processorIndices[ptI];
}
else
{
vh->procIndex() = Pstream::myProcNo();
}
if (types.headerOk())
{
vh->type() =
static_cast<Foam::indexedVertexEnum::vertexType>
(
types[ptI]
);
}
else
{
vh->type() = Vb::vtUnassigned;
}
}
}
}
// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
template<class Triangulation>

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@ -43,6 +43,7 @@ SourceFiles
#include "boundBox.H"
#include "indexedVertex.H"
#include "CGALTriangulation3Ddefs.H"
#include "Time.H"
#include "autoPtr.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
@ -82,6 +83,12 @@ public:
FixedList<label, 2>::Hash<>
> labelPairHashSet;
typedef HashTable
<
label,
labelPair,
FixedList<label, 2>::Hash<>
> labelTolabelPairHashTable;
private:
@ -95,6 +102,9 @@ private:
// This allows a unique index to be assigned to each cell.
mutable label cellCount_;
//- Reference to Time
const Time& runTime_;
//- Spatial sort traits to use with a pair of point pointers and an int.
// Taken from a post on the CGAL lists: 2010-01/msg00004.html by
// Sebastien Loriot (Geometry Factory).
@ -159,7 +169,13 @@ public:
// Constructors
//- Construct from components
DelaunayMesh();
explicit DelaunayMesh(const Time& runTime);
DelaunayMesh
(
const Time& runTime,
const word& meshName
);
//- Destructor
@ -168,6 +184,14 @@ public:
// Member Functions
inline const Time& time() const;
inline void timeCheck
(
const string& description,
const bool check = true
) const;
inline label getNewVertexIndex() const;
inline label getNewCellIndex() const;
@ -177,6 +201,7 @@ public:
inline void resetCellCount();
inline label vertexCount() const;
inline label& vertexCount();
inline void resetVertexCount();
@ -209,12 +234,12 @@ public:
//- Create an fvMesh from the triangulation.
// The mesh is not parallel consistent - only used for viewing
autoPtr<fvMesh> createMesh
autoPtr<polyMesh> createMesh
(
const fileName& name,
const Time& runTime,
labelList& vertexMap,
labelList& cellMap
labelTolabelPairHashTable& vertexMap,
labelList& cellMap,
const bool writeDelaunayData = true
) const;
};

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@ -36,6 +36,40 @@ License
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
template<class Triangulation>
inline const Foam::Time& Foam::DelaunayMesh<Triangulation>::time() const
{
return runTime_;
}
template<class Triangulation>
void Foam::DelaunayMesh<Triangulation>::timeCheck
(
const string& description,
const bool check
) const
{
if (check)
{
Info<< nl << "--- [ cpuTime "
<< time().elapsedCpuTime() << " s, "
<< "delta " << time().cpuTimeIncrement()<< " s";
if (description != word::null)
{
Info<< ", " << description << " ";
}
else
{
Info<< " ";
}
Info<< "] --- " << endl;
}
}
template<class Triangulation>
inline Foam::label Foam::DelaunayMesh<Triangulation>::getNewVertexIndex() const
{
@ -90,6 +124,12 @@ Foam::label Foam::DelaunayMesh<Triangulation>::vertexCount() const
return vertexCount_;
}
template<class Triangulation>
Foam::label& Foam::DelaunayMesh<Triangulation>::vertexCount()
{
return vertexCount_;
}
template<class Triangulation>
void Foam::DelaunayMesh<Triangulation>::resetVertexCount()

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@ -28,6 +28,7 @@ License
#include "pointConversion.H"
#include "wallPolyPatch.H"
#include "processorPolyPatch.H"
#include "labelIOField.H"
// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
@ -331,13 +332,13 @@ void Foam::DelaunayMesh<Triangulation>::printVertexInfo(Ostream& os) const
template<class Triangulation>
Foam::autoPtr<Foam::fvMesh>
Foam::autoPtr<Foam::polyMesh>
Foam::DelaunayMesh<Triangulation>::createMesh
(
const fileName& name,
const Time& runTime,
labelList& vertexMap,
labelList& cellMap
labelTolabelPairHashTable& vertexMap,
labelList& cellMap,
const bool writeDelaunayData
) const
{
pointField points(Triangulation::number_of_vertices());
@ -354,12 +355,54 @@ Foam::DelaunayMesh<Triangulation>::createMesh
List<DynamicList<face> > patchFaces(1, DynamicList<face>());
List<DynamicList<label> > patchOwners(1, DynamicList<label>());
vertexMap.setSize(vertexCount(), -1);
vertexMap.resize(vertexCount());
cellMap.setSize(Triangulation::number_of_finite_cells(), -1);
// Calculate pts and a map of point index to location in pts.
label vertI = 0;
labelIOField indices
(
IOobject
(
"indices",
time().timeName(),
name,
time(),
IOobject::NO_READ,
IOobject::AUTO_WRITE
),
Triangulation::number_of_vertices()
);
labelIOField types
(
IOobject
(
"types",
time().timeName(),
name,
time(),
IOobject::NO_READ,
IOobject::AUTO_WRITE
),
Triangulation::number_of_vertices()
);
labelIOField processorIndices
(
IOobject
(
"processorIndices",
time().timeName(),
name,
time(),
IOobject::NO_READ,
IOobject::AUTO_WRITE
),
Triangulation::number_of_vertices()
);
for
(
Finite_vertices_iterator vit = Triangulation::finite_vertices_begin();
@ -369,13 +412,20 @@ Foam::DelaunayMesh<Triangulation>::createMesh
{
if (!vit->farPoint())
{
vertexMap[vit->index()] = vertI;
vertexMap(labelPair(vit->index(), vit->procIndex())) = vertI;
points[vertI] = topoint(vit->point());
indices[vertI] = vit->index();
types[vertI] = static_cast<label>(vit->type());
processorIndices[vertI] = vit->procIndex();
vertI++;
}
}
points.setSize(vertI);
indices.setSize(vertI);
types.setSize(vertI);
processorIndices.setSize(vertI);
// Index the cells
label cellI = 0;
@ -391,6 +441,7 @@ Foam::DelaunayMesh<Triangulation>::createMesh
(
!cit->hasFarPoint()
&& !Triangulation::is_infinite(cit)
&& cit->real()
)
{
cellMap[cit->cellIndex()] = cellI++;
@ -424,7 +475,12 @@ Foam::DelaunayMesh<Triangulation>::createMesh
label c1I = Cb::ctFar;
bool c1Real = false;
if (!c1->hasFarPoint() && !Triangulation::is_infinite(c1))
if
(
!c1->hasFarPoint()
&& !Triangulation::is_infinite(c1)
&& c1->real()
)
{
c1I = cellMap[c1->cellIndex()];
c1Real = true;
@ -432,7 +488,12 @@ Foam::DelaunayMesh<Triangulation>::createMesh
label c2I = Cb::ctFar;
bool c2Real = false;
if (!c2->hasFarPoint() && !Triangulation::is_infinite(c2))
if
(
!c2->hasFarPoint()
&& !Triangulation::is_infinite(c2)
&& c2->real()
)
{
c2I = cellMap[c2->cellIndex()];
c2Real = true;
@ -451,10 +512,17 @@ Foam::DelaunayMesh<Triangulation>::createMesh
{
verticesOnTriFace[i] = vertexMap
[
c1->vertex
labelPair
(
Triangulation::vertex_triple_index(oppositeVertex, i)
)->index()
c1->vertex
(
Triangulation::vertex_triple_index(oppositeVertex, i)
)->index(),
c1->vertex
(
Triangulation::vertex_triple_index(oppositeVertex, i)
)->procIndex()
)
];
}
@ -524,15 +592,15 @@ Foam::DelaunayMesh<Triangulation>::createMesh
Info<< "Creating mesh" << endl;
autoPtr<fvMesh> meshPtr
autoPtr<polyMesh> meshPtr
(
new fvMesh
new polyMesh
(
IOobject
(
name,
runTime.timeName(),
runTime,
time().timeName(),
time(),
IOobject::NO_READ,
IOobject::NO_WRITE
),
@ -565,7 +633,14 @@ Foam::DelaunayMesh<Triangulation>::createMesh
patches.setSize(nValidPatches);
meshPtr().addFvPatches(patches);
meshPtr().addPatches(patches);
if (writeDelaunayData)
{
indices.write();
types.write();
processorIndices.write();
}
Info<< "Mesh created" << endl;

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@ -126,9 +126,24 @@ Foam::DistributedDelaunayMesh<Triangulation>::buildMap
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
template<class Triangulation>
Foam::DistributedDelaunayMesh<Triangulation>::DistributedDelaunayMesh()
Foam::DistributedDelaunayMesh<Triangulation>::DistributedDelaunayMesh
(
const Time& runTime
)
:
DelaunayMesh<Triangulation>(),
DelaunayMesh<Triangulation>(runTime),
allBackgroundMeshBounds_()
{}
template<class Triangulation>
Foam::DistributedDelaunayMesh<Triangulation>::DistributedDelaunayMesh
(
const Time& runTime,
const word& meshName
)
:
DelaunayMesh<Triangulation>(runTime, meshName),
allBackgroundMeshBounds_()
{}

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@ -135,13 +135,25 @@ public:
// Constructors
//- Construct from components
DistributedDelaunayMesh();
explicit DistributedDelaunayMesh(const Time& runTime);
DistributedDelaunayMesh
(
const Time& runTime,
const word& meshName
);
//- Destructor
~DistributedDelaunayMesh();
// Queries
//- Use DelaunayMesh timeCheck function
using DelaunayMesh<Triangulation>::timeCheck;
// Member Functions
//- Build a mapDistribute for the supplied destination processor data

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@ -791,10 +791,11 @@ Foam::backgroundMeshDecomposition::backgroundMeshDecomposition
(
IOobject
(
fvMesh::defaultRegion,
"backgroundMeshDecomposition",
runTime_.timeName(),
runTime_,
IOobject::MUST_READ
IOobject::MUST_READ,
IOobject::AUTO_WRITE
)
),
meshCutter_

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@ -27,7 +27,7 @@ License
#include "cellSizeAndAlignmentControls.H"
#include "pointIOField.H"
#include "scalarIOField.H"
#include "tensorIOField.H"
#include "triadIOField.H"
#include "tetrahedron.H"
#include "plane.H"
#include "transform.H"
@ -38,6 +38,8 @@ License
namespace Foam
{
defineTypeNameAndDebug(cellShapeControlMesh, 0);
word cellShapeControlMesh::meshSubDir = "cellShapeControlMesh";
}
@ -366,9 +368,89 @@ void Foam::cellShapeControlMesh::writeTriangulation()
Foam::cellShapeControlMesh::cellShapeControlMesh(const Time& runTime)
:
DistributedDelaunayMesh<CellSizeDelaunay>
(
runTime,
meshSubDir
),
runTime_(runTime),
defaultCellSize_(0.0)
{}
{
if (this->vertexCount())
{
fvMesh mesh
(
IOobject
(
meshSubDir,
runTime.timeName(),
runTime,
IOobject::READ_IF_PRESENT,
IOobject::NO_WRITE
)
);
if (mesh.nPoints() == this->vertexCount())
{
pointScalarField sizes
(
IOobject
(
"sizes",
runTime.timeName(),
meshSubDir,
runTime,
IOobject::READ_IF_PRESENT,
IOobject::NO_WRITE
),
pointMesh::New(mesh)
);
triadIOField alignments
(
IOobject
(
"alignments",
mesh.time().timeName(),
meshSubDir,
mesh.time(),
IOobject::READ_IF_PRESENT,
IOobject::AUTO_WRITE
)
);
if
(
sizes.size() == this->vertexCount()
&& alignments.size() == this->vertexCount()
)
{
label count = 0;
for
(
Finite_vertices_iterator vit = finite_vertices_begin();
vit != finite_vertices_end();
++vit
)
{
vit->targetCellSize() = sizes[count];
vit->alignment() = alignments[count];
count++;
}
}
else
{
FatalErrorIn
(
"Foam::cellShapeControlMesh::cellShapeControlMesh"
"(const Time&)"
) << "Cell size point field is not the same size as the "
<< "mesh."
<< abort(FatalError);
}
}
}
}
//Foam::triangulatedMesh::triangulatedMesh
@ -744,9 +826,7 @@ void Foam::cellShapeControlMesh::insertBoundingPoints
void Foam::cellShapeControlMesh::write() const
{
Info<< "Writing cell size and alignment mesh" << endl;
const fileName name("cellSizeAndAlignmentMesh");
Info<< "Writing " << meshSubDir << endl;
// Reindex the cells
label cellCount = 0;
@ -763,17 +843,16 @@ void Foam::cellShapeControlMesh::write() const
}
}
labelList vertexMap;
DelaunayMesh<CellSizeDelaunay>::labelTolabelPairHashTable vertexMap;
labelList cellMap;
autoPtr<fvMesh> meshPtr = DelaunayMesh<CellSizeDelaunay>::createMesh
autoPtr<polyMesh> meshPtr = DelaunayMesh<CellSizeDelaunay>::createMesh
(
name,
runTime_,
meshSubDir,
vertexMap,
cellMap
);
const fvMesh& mesh = meshPtr();
const polyMesh& mesh = meshPtr();
pointScalarField sizes
(
@ -781,7 +860,8 @@ void Foam::cellShapeControlMesh::write() const
(
"sizes",
mesh.time().timeName(),
mesh,
meshSubDir,
mesh.time(),
IOobject::NO_READ,
IOobject::AUTO_WRITE
),
@ -789,7 +869,22 @@ void Foam::cellShapeControlMesh::write() const
scalar(0)
);
OFstream str(runTime_.path()/"alignments.obj");
triadIOField alignments
(
IOobject
(
"alignments",
mesh.time().timeName(),
meshSubDir,
mesh.time(),
IOobject::NO_READ,
IOobject::AUTO_WRITE
),
sizes.size()
);
// Write alignments
// OFstream str(runTime_.path()/"alignments.obj");
for
(
@ -801,35 +896,41 @@ void Foam::cellShapeControlMesh::write() const
if (!vit->farPoint())
{
// Populate sizes
sizes[vertexMap[vit->index()]] = vit->targetCellSize();
sizes[vertexMap[labelPair(vit->index(), vit->procIndex())]] =
vit->targetCellSize();
// Write alignments
const tensor& alignment = vit->alignment();
pointFromPoint pt = topoint(vit->point());
alignments[vertexMap[labelPair(vit->index(), vit->procIndex())]] =
vit->alignment();
if
(
alignment.x() == triad::unset[0]
|| alignment.y() == triad::unset[0]
|| alignment.z() == triad::unset[0]
)
{
Info<< "Bad alignment = " << vit->info();
vit->alignment() = tensor::I;
Info<< "New alignment = " << vit->info();
continue;
}
meshTools::writeOBJ(str, pt, alignment.x() + pt);
meshTools::writeOBJ(str, pt, alignment.y() + pt);
meshTools::writeOBJ(str, pt, alignment.z() + pt);
// // Write alignments
// const tensor& alignment = vit->alignment();
// pointFromPoint pt = topoint(vit->point());
//
// if
// (
// alignment.x() == triad::unset[0]
// || alignment.y() == triad::unset[0]
// || alignment.z() == triad::unset[0]
// )
// {
// Info<< "Bad alignment = " << vit->info();
//
// vit->alignment() = tensor::I;
//
// Info<< "New alignment = " << vit->info();
//
// continue;
// }
//
// meshTools::writeOBJ(str, pt, alignment.x() + pt);
// meshTools::writeOBJ(str, pt, alignment.y() + pt);
// meshTools::writeOBJ(str, pt, alignment.z() + pt);
}
}
mesh.write();
sizes.write();
alignments.write();
}

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@ -95,6 +95,9 @@ public:
//- Runtime type information
ClassName("cellShapeControlMesh");
//- Return the mesh sub-directory name (usually "cellShapeControlMesh")
static word meshSubDir;
// Constructors

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@ -223,6 +223,13 @@ void Foam::controlMeshRefinement::initialMeshPopulation
const autoPtr<backgroundMeshDecomposition>& decomposition
)
{
if (shapeController_.shapeControlMesh().vertexCount() > 0)
{
// Mesh already populated.
Info<< "Cell size and alignment mesh already populated." << endl;
return;
}
autoPtr<boundBox> overallBoundBox;
// Need to pass in the background mesh decomposition so that can test if
@ -268,7 +275,7 @@ void Foam::controlMeshRefinement::initialMeshPopulation
controlFunction.initialVertices(pts, sizes, alignments);
Info<< " Got initial vertices list" << endl;
Info<< " Got initial vertices list of size " << pts.size() << endl;
List<Vb> vertices(pts.size());

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@ -981,7 +981,7 @@ Foam::conformalVoronoiMesh::conformalVoronoiMesh
const dictionary& foamyHexMeshDict
)
:
DistributedDelaunayMesh<Delaunay>(),
DistributedDelaunayMesh<Delaunay>(runTime),
runTime_(runTime),
rndGen_(64293*Pstream::myProcNo()),
foamyHexMeshControls_(foamyHexMeshDict),
@ -1135,8 +1135,6 @@ void Foam::conformalVoronoiMesh::initialiseForMotion()
Foam::indexedVertexEnum::vtExternalFeaturePoint
);
}
//writeFixedPoints("fixedPointsStart.obj");
}
@ -1814,32 +1812,6 @@ void Foam::conformalVoronoiMesh::move()
if (time().outputTime())
{
writeMesh(time().timeName());
// label cellI = 0;
// for
// (
// Finite_cells_iterator cit = finite_cells_begin();
// cit != finite_cells_end();
// ++cit
// )
// {
// if
// (
// !cit->hasFarPoint()
// && !is_infinite(cit)
// )
// {
// cit->cellIndex() = cellI++;
// }
// }
//
// labelList vertexMap;
// labelList cellMap;
// autoPtr<fvMesh> tetMesh =
// createMesh("tetMesh", runTime_, vertexMap, cellMap);
//
// tetMesh().write();
//writeFixedPoints("fixedPointsStart_" + runTime_.timeName() + ".obj");
}
updateSizesAndAlignments(pointsToInsert);

View File

@ -2808,7 +2808,7 @@ void Foam::conformalVoronoiMesh::createFacesOwnerNeighbourAndPatches
patchPointPairSlaves[patchI].transfer(patchPPSlaves[patchI]);
}
// if (foamyHexMeshControls().objOutput())
if (foamyHexMeshControls().objOutput())
{
Info<< "Writing processor interfaces" << endl;

View File

@ -337,11 +337,10 @@ inline void Foam::conformalVoronoiMesh::createPointPair
const Foam::point internalPt = surfPt - ppDistn;
const Foam::point externalPt = surfPt + ppDistn;
if
(
geometryToConformTo_.inside(internalPt)
&& geometryToConformTo_.outside(externalPt)
)
bool internalInside = geometryToConformTo_.inside(internalPt);
bool externalOutside = geometryToConformTo_.outside(externalPt);
if (internalInside && externalOutside)
{
pts.append
(
@ -369,11 +368,8 @@ inline void Foam::conformalVoronoiMesh::createPointPair
{
Info<< "Warning: point pair not inside/outside" << nl
<< " surfPt = " << surfPt << nl
<< " internal = "
<< internalPt << " " << geometryToConformTo_.inside(internalPt)
<< nl
<< " external = "
<< externalPt << " " << geometryToConformTo_.outside(externalPt)
<< " internal = " << internalPt << " " << internalInside << nl
<< " external = " << externalPt << " " << externalOutside
<< endl;
}
}

View File

@ -421,202 +421,247 @@ void Foam::conformalVoronoiMesh::writeMesh(const fileName& instance)
}
}
if (foamyHexMeshControls().writeCellShapeControlMesh())
{
cellShapeControls().shapeControlMesh().write();
}
if (foamyHexMeshControls().writeBackgroundMeshDecomposition())
{
Info<< nl << "Writing " << "backgroundMeshDecomposition" << endl;
// Have to explicitly update the mesh instance.
const_cast<fvMesh&>(decomposition_().mesh()).setInstance
(
time().timeName()
);
decomposition_().mesh().write();
}
if (foamyHexMeshControls().writeTetDualMesh())
{
// Determine map from Delaunay vertex to Dual mesh
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
// From all Delaunay vertices to cell (positive index)
// or patch face (negative index)
labelList vertexToDualAddressing(number_of_vertices(), 0);
forAll(cellToDelaunayVertex, cellI)
label cellI = 0;
for
(
Finite_cells_iterator cit = finite_cells_begin();
cit != finite_cells_end();
++cit
)
{
label vertI = cellToDelaunayVertex[cellI];
if (vertexToDualAddressing[vertI] != 0)
if
(
!cit->hasFarPoint()
&& !is_infinite(cit)
)
{
FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
<< "Delaunay vertex " << vertI
<< " from cell " << cellI
<< " is already mapped to "
<< vertexToDualAddressing[vertI]
<< exit(FatalError);
}
vertexToDualAddressing[vertI] = cellI+1;
}
forAll(patchToDelaunayVertex, patchI)
{
const labelList& patchVertices = patchToDelaunayVertex[patchI];
forAll(patchVertices, i)
{
label vertI = patchVertices[i];
if (vertexToDualAddressing[vertI] > 0)
{
FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
<< "Delaunay vertex " << vertI
<< " from patch " << patchI
<< " local index " << i
<< " is already mapped to cell "
<< vertexToDualAddressing[vertI]-1
<< exit(FatalError);
}
// Vertex might be used by multiple faces. Which one to
// use? For now last one wins.
label dualFaceI = dualPatchStarts[patchI]+i;
vertexToDualAddressing[vertI] = -dualFaceI-1;
cit->cellIndex() = cellI++;
}
}
Info<< nl << "Writing " << "tetDualMesh" << endl;
// Calculate tet mesh addressing
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DistributedDelaunayMesh<Delaunay>::labelTolabelPairHashTable vertexMap;
labelList cellMap;
autoPtr<polyMesh> tetMesh =
createMesh("tetDualMesh", vertexMap, cellMap);
pointField points;
labelList boundaryPts(number_of_finite_cells(), -1);
// From tet point back to Delaunay vertex index
labelList pointToDelaunayVertex;
faceList faces;
labelList owner;
labelList neighbour;
wordList patchTypes;
wordList patchNames;
PtrList<dictionary> patchDicts;
pointField cellCentres;
tetMesh().write();
calcTetMesh
(
points,
pointToDelaunayVertex,
faces,
owner,
neighbour,
patchTypes,
patchNames,
patchDicts
);
// Calculate map from tet points to dual mesh cells/patch faces
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
labelIOList pointDualAddressing
(
IOobject
(
"pointDualAddressing",
instance,
"tetDualMesh"/polyMesh::meshSubDir,
runTime_,
IOobject::NO_READ,
IOobject::AUTO_WRITE,
false
),
UIndirectList<label>
(
vertexToDualAddressing,
pointToDelaunayVertex
)()
);
label pointI = findIndex(pointDualAddressing, -1);
if (pointI != -1)
{
WarningIn
(
"conformalVoronoiMesh::writeMesh\n"
"(\n"
" const fileName& instance,\n"
" bool filterFaces\n"
")\n"
) << "Delaunay vertex " << pointI
<< " does not have a corresponding dual cell." << endl;
}
Info<< "Writing map from tetDualMesh points to Voronoi mesh to "
<< pointDualAddressing.objectPath() << endl;
pointDualAddressing.write();
// Write tet points corresponding to the Voronoi cell/face centre
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
{
// Read Voronoi mesh
fvMesh mesh
(
IOobject
(
Foam::polyMesh::defaultRegion,
instance,
runTime_,
IOobject::MUST_READ
)
);
pointIOField dualPoints
(
IOobject
(
"dualPoints",
instance,
"tetDualMesh"/polyMesh::meshSubDir,
runTime_,
IOobject::NO_READ,
IOobject::AUTO_WRITE,
false
),
points
);
forAll(pointDualAddressing, pointI)
{
label index = pointDualAddressing[pointI];
if (index > 0)
{
label cellI = index-1;
dualPoints[pointI] = mesh.cellCentres()[cellI];
}
else if (index < 0)
{
label faceI = -index-1;
if (faceI >= mesh.nInternalFaces())
{
dualPoints[pointI] = mesh.faceCentres()[faceI];
}
}
}
Info<< "Writing new tetDualMesh points mapped onto Voronoi mesh to "
<< dualPoints.objectPath() << endl
<< "Replace the polyMesh/points with these." << endl;
dualPoints.write();
}
Info<< nl << "Writing tetDualMesh to " << instance << endl;
PackedBoolList boundaryFacesToRemove;
writeMesh
(
"tetDualMesh",
instance,
points,
boundaryPts,
faces,
owner,
neighbour,
patchTypes,
patchNames,
patchDicts,
cellCentres,
boundaryFacesToRemove
);
// // Determine map from Delaunay vertex to Dual mesh
// // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
//
// // From all Delaunay vertices to cell (positive index)
// // or patch face (negative index)
// labelList vertexToDualAddressing(number_of_vertices(), 0);
//
// forAll(cellToDelaunayVertex, cellI)
// {
// label vertI = cellToDelaunayVertex[cellI];
//
// if (vertexToDualAddressing[vertI] != 0)
// {
// FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
// << "Delaunay vertex " << vertI
// << " from cell " << cellI
// << " is already mapped to "
// << vertexToDualAddressing[vertI]
// << exit(FatalError);
// }
// vertexToDualAddressing[vertI] = cellI+1;
// }
//
// forAll(patchToDelaunayVertex, patchI)
// {
// const labelList& patchVertices = patchToDelaunayVertex[patchI];
//
// forAll(patchVertices, i)
// {
// label vertI = patchVertices[i];
//
// if (vertexToDualAddressing[vertI] > 0)
// {
// FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
// << "Delaunay vertex " << vertI
// << " from patch " << patchI
// << " local index " << i
// << " is already mapped to cell "
// << vertexToDualAddressing[vertI]-1
// << exit(FatalError);
// }
//
// // Vertex might be used by multiple faces. Which one to
// // use? For now last one wins.
// label dualFaceI = dualPatchStarts[patchI]+i;
// vertexToDualAddressing[vertI] = -dualFaceI-1;
// }
// }
//
//
// // Calculate tet mesh addressing
// // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
//
// pointField points;
// labelList boundaryPts(number_of_finite_cells(), -1);
// // From tet point back to Delaunay vertex index
// labelList pointToDelaunayVertex;
// faceList faces;
// labelList owner;
// labelList neighbour;
// wordList patchTypes;
// wordList patchNames;
// PtrList<dictionary> patchDicts;
// pointField cellCentres;
//
// calcTetMesh
// (
// points,
// pointToDelaunayVertex,
// faces,
// owner,
// neighbour,
// patchTypes,
// patchNames,
// patchDicts
// );
//
//
//
// // Calculate map from tet points to dual mesh cells/patch faces
// // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
//
// labelIOList pointDualAddressing
// (
// IOobject
// (
// "pointDualAddressing",
// instance,
// "tetDualMesh"/polyMesh::meshSubDir,
// runTime_,
// IOobject::NO_READ,
// IOobject::AUTO_WRITE,
// false
// ),
// UIndirectList<label>
// (
// vertexToDualAddressing,
// pointToDelaunayVertex
// )()
// );
//
// label pointI = findIndex(pointDualAddressing, -1);
// if (pointI != -1)
// {
// WarningIn
// (
// "conformalVoronoiMesh::writeMesh\n"
// "(\n"
// " const fileName& instance,\n"
// " bool filterFaces\n"
// ")\n"
// ) << "Delaunay vertex " << pointI
// << " does not have a corresponding dual cell." << endl;
// }
//
// Info<< "Writing map from tetDualMesh points to Voronoi mesh to "
// << pointDualAddressing.objectPath() << endl;
// pointDualAddressing.write();
//
//
//
// // Write tet points corresponding to the Voronoi cell/face centre
// // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
// {
// // Read Voronoi mesh
// fvMesh mesh
// (
// IOobject
// (
// Foam::polyMesh::defaultRegion,
// instance,
// runTime_,
// IOobject::MUST_READ
// )
// );
// pointIOField dualPoints
// (
// IOobject
// (
// "dualPoints",
// instance,
// "tetDualMesh"/polyMesh::meshSubDir,
// runTime_,
// IOobject::NO_READ,
// IOobject::AUTO_WRITE,
// false
// ),
// points
// );
//
// forAll(pointDualAddressing, pointI)
// {
// label index = pointDualAddressing[pointI];
//
// if (index > 0)
// {
// label cellI = index-1;
// dualPoints[pointI] = mesh.cellCentres()[cellI];
// }
// else if (index < 0)
// {
// label faceI = -index-1;
// if (faceI >= mesh.nInternalFaces())
// {
// dualPoints[pointI] = mesh.faceCentres()[faceI];
// }
// }
// }
//
// Info<< "Writing tetDualMesh points mapped onto Voronoi mesh to "
// << dualPoints.objectPath() << endl
// << "Replace the polyMesh/points with these." << endl;
// dualPoints.write();
// }
//
//
// Info<< nl << "Writing tetDualMesh to " << instance << endl;
//
// PackedBoolList boundaryFacesToRemove;
// writeMesh
// (
// "tetDualMesh",
// instance,
// points,
// boundaryPts,
// faces,
// owner,
// neighbour,
// patchTypes,
// patchNames,
// patchDicts,
// cellCentres,
// boundaryFacesToRemove
// );
}
}

View File

@ -247,6 +247,20 @@ Foam::cvControls::cvControls
}
writeTetDualMesh_ = Switch(filteringDict.lookup("writeTetDualMesh"));
writeCellShapeControlMesh_ =
Switch(filteringDict.lookup("writeCellShapeControlMesh"));
if (Pstream::parRun())
{
writeBackgroundMeshDecomposition_ =
Switch(filteringDict.lookup("writeBackgroundMeshDecomposition"));
}
else
{
writeBackgroundMeshDecomposition_ = Switch(false);
}
}

View File

@ -202,6 +202,10 @@ class cvControls
//- Write tet mesh at output time (it always writes the Voronoi)
Switch writeTetDualMesh_;
Switch writeCellShapeControlMesh_;
Switch writeBackgroundMeshDecomposition_;
// Private Member Functions
@ -335,6 +339,12 @@ public:
//- Write tetMesh at output time
inline Switch writeTetDualMesh() const;
//- Write cellShapeControlMesh at output time
inline Switch writeCellShapeControlMesh() const;
//- Write backgroundMeshDecomposition at output time
inline Switch writeBackgroundMeshDecomposition() const;
};

View File

@ -215,5 +215,15 @@ inline Foam::Switch Foam::cvControls::writeTetDualMesh() const
return writeTetDualMesh_;
}
inline Foam::Switch Foam::cvControls::writeCellShapeControlMesh() const
{
return writeCellShapeControlMesh_;
}
inline Foam::Switch Foam::cvControls::writeBackgroundMeshDecomposition() const
{
return writeBackgroundMeshDecomposition_;
}
// ************************************************************************* //

View File

@ -55,6 +55,9 @@ Usage
\param -fields \n
Use existing geometry decomposition and convert fields only.
\param -sets \n
Decompose cellSets, faceSets, pointSets.
\param -force \n
Remove any existing \a processor subdirectories before decomposing the
geometry.
@ -127,6 +130,11 @@ int main(int argc, char *argv[])
"use existing geometry decomposition and convert fields only"
);
argList::addBoolOption
(
"sets",
"decompose cellSets, faceSets, pointSets"
);
argList::addBoolOption
(
"force",
"remove existing processor*/ subdirs before decomposing the geometry"
@ -146,6 +154,7 @@ int main(int argc, char *argv[])
bool writeCellDist = args.optionFound("cellDist");
bool copyUniform = args.optionFound("copyUniform");
bool decomposeFieldsOnly = args.optionFound("fields");
bool decomposeSets = args.optionFound("sets");
bool forceOverwrite = args.optionFound("force");
bool ifRequiredDecomposition = args.optionFound("ifRequired");
@ -312,7 +321,7 @@ int main(int argc, char *argv[])
{
mesh.decomposeMesh();
mesh.writeDecomposition();
mesh.writeDecomposition(decomposeSets);
if (writeCellDist)
{

View File

@ -34,6 +34,10 @@ License
#include "globalMeshData.H"
#include "DynamicList.H"
#include "fvFieldDecomposer.H"
#include "IOobjectList.H"
#include "cellSet.H"
#include "faceSet.H"
#include "pointSet.H"
// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
@ -123,7 +127,7 @@ Foam::domainDecomposition::~domainDecomposition()
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
bool Foam::domainDecomposition::writeDecomposition()
bool Foam::domainDecomposition::writeDecomposition(const bool decomposeSets)
{
Info<< "\nConstructing processor meshes" << endl;
@ -160,6 +164,37 @@ bool Foam::domainDecomposition::writeDecomposition()
}
PtrList<const cellSet> cellSets;
PtrList<const faceSet> faceSets;
PtrList<const pointSet> pointSets;
if (decomposeSets)
{
// Read sets
IOobjectList objects(*this, facesInstance(), "polyMesh/sets");
{
IOobjectList cSets(objects.lookupClass(cellSet::typeName));
forAllConstIter(IOobjectList, cSets, iter)
{
cellSets.append(new cellSet(*iter()));
}
}
{
IOobjectList fSets(objects.lookupClass(faceSet::typeName));
forAllConstIter(IOobjectList, fSets, iter)
{
faceSets.append(new faceSet(*iter()));
}
}
{
IOobjectList pSets(objects.lookupClass(pointSet::typeName));
forAllConstIter(IOobjectList, pSets, iter)
{
pointSets.append(new pointSet(*iter()));
}
}
}
label maxProcCells = 0;
label totProcFaces = 0;
label maxProcPatches = 0;
@ -732,6 +767,52 @@ bool Foam::domainDecomposition::writeDecomposition()
procMesh.write();
if (decomposeSets)
{
forAll(cellSets, i)
{
const cellSet& cs = cellSets[i];
cellSet set(procMesh, cs.name(), cs.size()/nProcs_);
forAll(curCellLabels, i)
{
if (cs.found(curCellLabels[i]))
{
set.insert(i);
}
}
set.write();
}
forAll(faceSets, i)
{
const faceSet& cs = faceSets[i];
faceSet set(procMesh, cs.name(), cs.size()/nProcs_);
forAll(curFaceLabels, i)
{
if (cs.found(mag(curFaceLabels[i])-1))
{
set.insert(i);
}
}
set.write();
}
forAll(pointSets, i)
{
const pointSet& cs = pointSets[i];
pointSet set(procMesh, cs.name(), cs.size()/nProcs_);
forAll(curPointLabels, i)
{
if (cs.found(curPointLabels[i]))
{
set.insert(i);
}
}
set.write();
}
}
// Write points if pointsInstance differing from facesInstance
if (facesInstancePointsPtr_.valid())
{

View File

@ -2,7 +2,7 @@
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011 OpenFOAM Foundation
\\ / A nd | Copyright (C) 2011-2013 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
@ -172,7 +172,7 @@ public:
void decomposeMesh();
//- Write decomposition
bool writeDecomposition();
bool writeDecomposition(const bool decomposeSets);
//- Cell-processor decomposition labels
const labelList& cellToProc() const

View File

@ -1,6 +1,7 @@
EXE_INC = \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/lagrangian/basic/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/parallel/reconstruct/reconstruct/lnInclude \
-I$(LIB_SRC)/regionModels/regionModel/lnInclude

View File

@ -41,6 +41,10 @@ Description
#include "pointFieldReconstructor.H"
#include "reconstructLagrangian.H"
#include "cellSet.H"
#include "faceSet.H"
#include "pointSet.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
bool haveAllTimes
@ -99,6 +103,11 @@ int main(int argc, char *argv[])
"skip reconstructing lagrangian positions and fields"
);
argList::addBoolOption
(
"sets",
"reconstruct cellSets, faceSets, pointSets"
);
argList::addBoolOption
(
"newTimes",
"only reconstruct new times (i.e. that do not exist already)"
@ -113,6 +122,9 @@ int main(int argc, char *argv[])
args.optionLookup("fields")() >> selectedFields;
}
const bool reconstructSets = args.optionFound("sets");
const bool noLagrangian = args.optionFound("noLagrangian");
HashSet<word> selectedLagrangianFields;
@ -668,6 +680,148 @@ int main(int argc, char *argv[])
Info<< "No lagrangian fields" << nl << endl;
}
}
if (reconstructSets)
{
// Scan to find all sets
HashTable<label> cSetNames;
HashTable<label> fSetNames;
HashTable<label> pSetNames;
forAll(procMeshes.meshes(), procI)
{
const fvMesh& procMesh = procMeshes.meshes()[procI];
IOobjectList objects
(
procMesh, procMesh.facesInstance(), "polyMesh/sets"
);
IOobjectList cSets(objects.lookupClass(cellSet::typeName));
forAllConstIter(IOobjectList, cSets, iter)
{
cSetNames.insert(iter.key(), cSetNames.size());
}
IOobjectList fSets(objects.lookupClass(faceSet::typeName));
forAllConstIter(IOobjectList, fSets, iter)
{
fSetNames.insert(iter.key(), fSetNames.size());
}
IOobjectList pSets(objects.lookupClass(pointSet::typeName));
forAllConstIter(IOobjectList, pSets, iter)
{
pSetNames.insert(iter.key(), pSetNames.size());
}
}
// Construct all sets
PtrList<cellSet> cellSets(cSetNames.size());
PtrList<faceSet> faceSets(fSetNames.size());
PtrList<pointSet> pointSets(pSetNames.size());
// Load sets
forAll(procMeshes.meshes(), procI)
{
const fvMesh& procMesh = procMeshes.meshes()[procI];
IOobjectList objects
(
procMesh, procMesh.facesInstance(), "polyMesh/sets"
);
// cellSets
const labelList& cellMap =
procMeshes.cellProcAddressing()[procI];
IOobjectList cSets(objects.lookupClass(cellSet::typeName));
forAllConstIter(IOobjectList, cSets, iter)
{
// Load cellSet
const cellSet procSet(*iter());
label setI = cSetNames[iter.key()];
if (!cellSets.set(setI))
{
cellSets.set
(
setI,
new cellSet(mesh, iter.key(), procSet.size())
);
}
cellSet& cSet = cellSets[setI];
forAllConstIter(cellSet, procSet, iter)
{
cSet.insert(cellMap[iter.key()]);
}
}
// faceSets
const labelList& faceMap =
procMeshes.faceProcAddressing()[procI];
IOobjectList fSets(objects.lookupClass(faceSet::typeName));
forAllConstIter(IOobjectList, fSets, iter)
{
// Load faceSet
const faceSet procSet(*iter());
label setI = fSetNames[iter.key()];
if (!faceSets.set(setI))
{
faceSets.set
(
setI,
new faceSet(mesh, iter.key(), procSet.size())
);
}
faceSet& fSet = faceSets[setI];
forAllConstIter(faceSet, procSet, iter)
{
fSet.insert(mag(faceMap[iter.key()])-1);
}
}
// pointSets
const labelList& pointMap =
procMeshes.pointProcAddressing()[procI];
IOobjectList pSets(objects.lookupClass(pointSet::typeName));
forAllConstIter(IOobjectList, pSets, iter)
{
// Load pointSet
const pointSet propSet(*iter());
label setI = pSetNames[iter.key()];
if (!pointSets.set(setI))
{
pointSets.set
(
setI,
new pointSet(mesh, iter.key(), propSet.size())
);
}
pointSet& pSet = pointSets[setI];
forAllConstIter(pointSet, propSet, iter)
{
pSet.insert(pointMap[iter.key()]);
}
}
}
// Write sets
forAll(cellSets, i)
{
cellSets[i].write();
}
forAll(faceSets, i)
{
faceSets[i].write();
}
forAll(pointSets, i)
{
pointSets[i].write();
}
}
}
}

View File

@ -41,6 +41,8 @@ usage: ${0##*/}
--archOption arch specify architecture option (only 32 or 64 applicable)
--paraviewInstall dir specify ParaView_DIR (e.g. /opt/paraviewopenfoam3120)
--paraviewVersion ver specify ParaView_VERSION (e.g. 3.12.0)
--scotchArchPath dir specify SCOTCH_ARCH_PATH (e.g. /opt/OpenFOAM-scotch-6.0.0/)
--scotchVersion ver specify SCOTCH_VERSION (e.g. 6.0.0)
* hardcode paths to installation
@ -49,32 +51,6 @@ USAGE
}
# Function to do replacement on file. Checks if any replacement has been done.
# inlineSed <file> <sedCommand> <description>
#_inlineSed()
#{
# [ -f "$1" ] || {
# echo "Missing file: $1"
# exit 1
# }
#
# backup="temp.$$"
# cp $1 $backup
# sed -i -e "$2" $1
#
# if cmp $1 $backup > /dev/null 2>&1
# then
# echo "Failed: $3 in $1"
# rm $backup 2>/dev/null
# exit 1
# else
# echo "Okay: $3 in $1"
# rm $backup 2>/dev/null
# fi
#
# return 0
#}
# Function to do replacement on file. Checks if any replacement has been done.
# _inlineSed <file> <regexp> <replacement> <msg>
_inlineSed()
@ -103,7 +79,8 @@ _inlineSed()
[ -f etc/bashrc ] || usage "Please run from top-level directory of installation"
unset foamInstall projectName projectVersion archOption paraviewInstall
unset foamInstall projectName projectVersion archOption
unset paraviewInstall scotchArchPath
# parse options
while [ "$#" -gt 0 ]
@ -172,7 +149,7 @@ do
etc/config/paraview.sh \
'ParaView_DIR=.*' \
'ParaView_DIR='"$paraviewInstall" \
"Replacing ParaView_DIR setting by '$paraviewInstall'"
"Replacing ParaView_DIR setting by '$paraviewInstall'"
shift 2
;;
-paraviewVersion | --paraviewVersion)
@ -186,13 +163,36 @@ do
"Replacing ParaView_VERSION setting by '$paraviewVersion'"
shift 2
;;
-scotchVersion | --scotchVersion)
[ "$#" -ge 2 ] || usage "'$1' option requires an argument"
scotchVersion="$2"
_inlineSed \
etc/config/scotch.sh \
'SCOTCH_VERSION=.*' \
'SCOTCH_VERSION='"$scotchVersion" \
"Replacing SCOTCH_VERSION setting by '$scotchVersion'"
shift 2
;;
-scotchArchPath | --scotchArchPath)
[ "$#" -ge 2 ] || usage "'$1' option requires an argument"
scotchArchPath="$2"
_inlineSed \
etc/config/scotch.sh \
'SCOTCH_ARCH_PATH=.*' \
'SCOTCH_ARCH_PATH='"$scotchArchPath" \
"Replacing SCOTCH_ARCH_PATH setting by '$scotchArchPath'"
shift 2
;;
*)
usage "unknown option/argument: '$*'"
;;
esac
done
[ -n "$foamInstall" -o -n "$projectName" -o -n "$projectVersion" -o -n "$archOption" -o -n "$paraviewInstall" -o -n "$paraviewVersion" ] || usage "Please specify at least one configure option"
[ -n "$foamInstall" -o -n "$projectName" -o -n "$projectVersion" -o -n "$archOption" \
-o -n "$paraviewInstall" -o -n "$paraviewVersion" \
-o -n "$scotchVersion" -o -n "$scotchArchPath" \
] || usage "Please specify at least one configure option"
#echo "Replacing WM_PROJECT setting by '$projectName'"
#sed -i -e 's@WM_PROJECT=.*@WM_PROJECT='"$projectName@" etc/bashrc

View File

@ -107,9 +107,11 @@ motionControl
polyMeshFiltering
{
filterEdges on;
filterFaces off;
writeTetDualMesh false;
filterEdges on;
filterFaces off;
writeTetDualMesh true;
writeCellShapeControlMesh true;
writeBackgroundMeshDecomposition true;
}

View File

@ -2,7 +2,7 @@
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011 OpenFOAM Foundation
\\ / A nd | Copyright (C) 2011-2013 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
@ -189,6 +189,11 @@ public:
// allocated entries.
void clear();
//- Append an element at the end of the list
inline void append(const T*);
inline void append(const autoPtr<T>&);
inline void append(const tmp<T>&);
//- Transfer the contents of the argument PtrList into this PtrList
// and annul the argument list.
void transfer(PtrList<T>&);

View File

@ -79,6 +79,32 @@ inline void Foam::PtrList<T>::resize(const label newSize)
}
template<class T>
inline void Foam::PtrList<T>::append(const T* ptr)
{
label sz = size();
this->setSize(sz+1);
ptrs_[sz] = ptr;
}
template<class T>
inline void Foam::PtrList<T>::append(const autoPtr<T>& aptr)
{
return append(const_cast<autoPtr<T>&>(aptr).ptr());
}
template<class T>
inline void Foam::PtrList<T>::append
(
const tmp<T>& t
)
{
return append(const_cast<tmp<T>&>(t).ptr());
}
template<class T>
inline bool Foam::PtrList<T>::set(const label i) const
{

View File

@ -2,7 +2,7 @@
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2012 OpenFOAM Foundation
\\ / A nd | Copyright (C) 2011-2013 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
@ -28,6 +28,7 @@ Description
\*---------------------------------------------------------------------------*/
#include "IOobject.H"
#include "objectRegistry.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
@ -53,7 +54,7 @@ bool Foam::IOobject::writeHeader(Ostream& os, const word& type) const
os << " note " << note() << ";\n";
}
os << " location " << instance()/local() << ";\n"
os << " location " << instance()/db().dbDir()/local() << ";\n"
<< " object " << name() << ";\n"
<< "}" << nl;

View File

@ -2,7 +2,7 @@
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2012 OpenFOAM Foundation
\\ / A nd | Copyright (C) 2011-2013 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
@ -252,7 +252,7 @@ public:
List<scalar>& bary
) const;
//- Return nearest point to p on tetrahedron. Is p itself
//- Return nearest point to p on tetrahedron. Is p itself
// if inside.
inline pointHit nearestPoint(const point& p) const;

View File

@ -955,6 +955,17 @@ Foam::labelList Foam::meshRefinement::markFacesOnProblemCells
}
}
// Because of isCollapsedFace one side can decide not to baffle whereas
// the other side does so sync. Baffling is prefered over not baffling.
syncTools::syncFaceList
(
mesh_,
facePatch,
maxEqOp<label>()
);
Info<< "markFacesOnProblemCells : marked "
<< returnReduce(nBaffleFaces, sumOp<label>())
<< " additional internal faces to be converted into baffles."

View File

@ -77,7 +77,7 @@ namespace Foam
> hExponentialSolidThermoPhysics;
typedef
typedef
polynomialSolidTransport
<
species::thermo

View File

@ -2,7 +2,7 @@
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2012 OpenFOAM Foundation
\\ / A nd | Copyright (C) 2011-2013 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
@ -28,26 +28,26 @@ License
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
template<class thermo>
Foam::constAnIsoSolidTransport<thermo>::constAnIsoSolidTransport
template<class Thermo>
Foam::constAnIsoSolidTransport<Thermo>::constAnIsoSolidTransport
(
const dictionary& dict
)
:
thermo(dict),
Thermo(dict),
kappa_(dict.subDict("transport").lookup("kappa"))
{}
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
template<class thermo>
void Foam::constAnIsoSolidTransport<thermo>::constAnIsoSolidTransport::write
template<class Thermo>
void Foam::constAnIsoSolidTransport<Thermo>::constAnIsoSolidTransport::write
(
Ostream& os
) const
{
thermo::write(os);
Thermo::write(os);
dictionary dict("transport");
dict.add("kappa", kappa_);
@ -57,14 +57,14 @@ void Foam::constAnIsoSolidTransport<thermo>::constAnIsoSolidTransport::write
// * * * * * * * * * * * * * * * IOstream Operators * * * * * * * * * * * * //
template<class thermo>
template<class Thermo>
Foam::Ostream& Foam::operator<<
(
Ostream& os,
const constAnIsoSolidTransport<thermo>& ct
const constAnIsoSolidTransport<Thermo>& ct
)
{
operator<<(os, static_cast<const thermo&>(ct));
operator<<(os, static_cast<const Thermo&>(ct));
os << tab << ct.kappa_;
os.check

View File

@ -2,7 +2,7 @@
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2012 OpenFOAM Foundation
\\ / A nd | Copyright (C) 2011-2013 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
@ -28,13 +28,13 @@ License
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
template<class thermo>
Foam::exponentialSolidTransport<thermo>::exponentialSolidTransport
template<class Thermo>
Foam::exponentialSolidTransport<Thermo>::exponentialSolidTransport
(
const dictionary& dict
)
:
thermo(dict),
Thermo(dict),
kappa0_(0.0),
n0_(0.0),
Tref_(0.0)
@ -48,13 +48,13 @@ Foam::exponentialSolidTransport<thermo>::exponentialSolidTransport
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
template<class thermo>
void Foam::exponentialSolidTransport<thermo>::exponentialSolidTransport::write
template<class Thermo>
void Foam::exponentialSolidTransport<Thermo>::exponentialSolidTransport::write
(
Ostream& os
) const
{
thermo::write(os);
Thermo::write(os);
dictionary dict("transport");
dict.add("kappa0", kappa0_);
@ -66,13 +66,13 @@ void Foam::exponentialSolidTransport<thermo>::exponentialSolidTransport::write
// * * * * * * * * * * * * * * * IOstream Operators * * * * * * * * * * * * //
template<class thermo>
template<class Thermo>
Foam::Ostream& Foam::operator<<
(
Ostream& os, const exponentialSolidTransport<thermo>& et
Ostream& os, const exponentialSolidTransport<Thermo>& et
)
{
operator<<(os, static_cast<const thermo&>(et));
operator<<(os, static_cast<const Thermo&>(et));
os << tab << et.kappa0_ << tab << et.n0_ << tab << et.Tref_;
os.check

View File

@ -2,7 +2,7 @@
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2011-2012 OpenFOAM Foundation
\\ / A nd | Copyright (C) 2011-2013 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
@ -25,30 +25,30 @@ License
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
template<class thermo>
inline Foam::exponentialSolidTransport<thermo>::exponentialSolidTransport
template<class Thermo>
inline Foam::exponentialSolidTransport<Thermo>::exponentialSolidTransport
(
const thermo& t,
const Thermo& t,
const scalar kappa0,
const scalar n0,
const scalar Tref
)
:
thermo(t),
Thermo(t),
kappa0_(kappa0),
n0_(n0),
Tref_(Tref)
{}
template<class thermo>
inline Foam::exponentialSolidTransport<thermo>::exponentialSolidTransport
template<class Thermo>
inline Foam::exponentialSolidTransport<Thermo>::exponentialSolidTransport
(
const word& name,
const exponentialSolidTransport& ct
)
:
thermo(name, ct),
Thermo(name, ct),
kappa0_(ct.kappa0_),
n0_(ct.n0_),
Tref_(ct.Tref_)
@ -70,8 +70,8 @@ Foam::exponentialSolidTransport<Thermo>::New
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
template<class thermo>
inline Foam::scalar Foam::exponentialSolidTransport<thermo>::kappa
template<class Thermo>
inline Foam::scalar Foam::exponentialSolidTransport<Thermo>::kappa
(
const scalar p, const scalar T
) const
@ -80,8 +80,8 @@ inline Foam::scalar Foam::exponentialSolidTransport<thermo>::kappa
}
template<class thermo>
inline Foam::vector Foam::exponentialSolidTransport<thermo>::Kappa
template<class Thermo>
inline Foam::vector Foam::exponentialSolidTransport<Thermo>::Kappa
(
const scalar p, const scalar T
) const
@ -91,13 +91,13 @@ inline Foam::vector Foam::exponentialSolidTransport<thermo>::Kappa
}
template<class thermo>
inline Foam::scalar Foam::exponentialSolidTransport<thermo>::
template<class Thermo>
inline Foam::scalar Foam::exponentialSolidTransport<Thermo>::
mu(const scalar p, const scalar T) const
{
notImplemented
(
"Foam::scalar Foam::exponentialSolidTransport<thermo>mu::"
"Foam::scalar Foam::exponentialSolidTransport<Thermo>mu::"
"("
" const scalar p, const scalar T"
") const"
@ -106,8 +106,8 @@ mu(const scalar p, const scalar T) const
}
template<class thermo>
inline Foam::scalar Foam::exponentialSolidTransport<thermo>::
template<class Thermo>
inline Foam::scalar Foam::exponentialSolidTransport<Thermo>::
alphah(const scalar p, const scalar T) const
{
return kappa(p, T)/this->Cpv(p, T);
@ -116,33 +116,28 @@ alphah(const scalar p, const scalar T) const
// * * * * * * * * * * * * * * * Member Operators * * * * * * * * * * * * * //
template<class thermo>
inline Foam::exponentialSolidTransport<thermo>&
Foam::exponentialSolidTransport<thermo>::operator=
template<class Thermo>
inline Foam::exponentialSolidTransport<Thermo>&
Foam::exponentialSolidTransport<Thermo>::operator=
(
const exponentialSolidTransport<thermo>& ct
const exponentialSolidTransport<Thermo>& ct
)
{
//thermo::operator=(ct);
kappa0_ = ct.kappa0_;
n0_ = ct.n0_;
Tref_ = ct.Tref_;
return *this;
}
template<class thermo>
inline void Foam::exponentialSolidTransport<thermo>::operator+=
template<class Thermo>
inline void Foam::exponentialSolidTransport<Thermo>::operator+=
(
const exponentialSolidTransport<thermo>& ct
const exponentialSolidTransport<Thermo>& ct
)
{
scalar molr1 = this->nMoles();
//thermo::operator+=(ct);
molr1 /= this->nMoles();
scalar molr2 = ct.nMoles()/this->nMoles();
@ -152,16 +147,14 @@ inline void Foam::exponentialSolidTransport<thermo>::operator+=
}
template<class thermo>
inline void Foam::exponentialSolidTransport<thermo>::operator-=
template<class Thermo>
inline void Foam::exponentialSolidTransport<Thermo>::operator-=
(
const exponentialSolidTransport<thermo>& ct
const exponentialSolidTransport<Thermo>& ct
)
{
scalar molr1 = this->nMoles();
//thermo::operator-=(ct);
molr1 /= this->nMoles();
scalar molr2 = ct.nMoles()/this->nMoles();
@ -173,16 +166,16 @@ inline void Foam::exponentialSolidTransport<thermo>::operator-=
// * * * * * * * * * * * * * * * Friend Operators * * * * * * * * * * * * * //
template<class thermo>
inline Foam::exponentialSolidTransport<thermo> Foam::operator*
template<class Thermo>
inline Foam::exponentialSolidTransport<Thermo> Foam::operator*
(
const scalar s,
const exponentialSolidTransport<thermo>& ct
const exponentialSolidTransport<Thermo>& ct
)
{
return exponentialSolidTransport<thermo>
return exponentialSolidTransport<Thermo>
(
s*static_cast<const thermo&>(ct),
s*static_cast<const Thermo&>(ct),
ct.kappa0_,
ct.n0_,
ct.Tref_

View File

@ -63,9 +63,6 @@ Foam::polynomialSolidTransport<Thermo, PolySize>::polynomialSolidTransport
template<class Thermo, int PolySize>
void Foam::polynomialSolidTransport<Thermo, PolySize>::write(Ostream& os) const
{
os << this->name() << endl;
os << token::BEGIN_BLOCK << incrIndent << nl;
Thermo::write(os);
dictionary dict("transport");
@ -76,8 +73,6 @@ void Foam::polynomialSolidTransport<Thermo, PolySize>::write(Ostream& os) const
kappaCoeffs_
);
os << indent << dict.dictName() << dict;
os << decrIndent << token::END_BLOCK << nl;
}

View File

@ -38,7 +38,7 @@ boundaryField
}
outlet
{
type fixedFluxPressure;
type fixedValue;
value $internalField;
}
fixedWalls

View File

@ -10,8 +10,8 @@ nProc=$(getNumberOfProcessors)
# copy flange surface from resources folder
cp $FOAM_TUTORIALS/resources/geometry/blob.stl.gz constant/triSurface/
runApplication blockMesh
runApplication decomposePar
runApplication blockMesh -region backgroundMeshDecomposition
runApplication decomposePar -region backgroundMeshDecomposition
runParallel foamyHexMesh $nProc
runParallel collapseEdges $nProc -latestTime -collapseFaces

View File

@ -0,0 +1,47 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: dev |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
location "system";
object decomposeParDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
numberOfSubdomains 2;
method scotch;
//method ptscotch;
// method hierarchical;
simpleCoeffs
{
n ( 2 2 1 );
delta 0.001;
}
hierarchicalCoeffs
{
n ( 2 1 1 );
delta 0.001;
order xyz;
}
manualCoeffs
{
dataFile "";
}
distributed no;
roots ( );
// ************************************************************************* //

View File

@ -0,0 +1 @@
../fvSchemes

View File

@ -0,0 +1 @@
../fvSolution

View File

@ -1,47 +0,0 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: dev |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
location "system";
object decomposeParDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
numberOfSubdomains 2;
method scotch;
//method ptscotch;
// method hierarchical;
simpleCoeffs
{
n ( 2 2 1 );
delta 0.001;
}
hierarchicalCoeffs
{
n ( 2 1 1 );
delta 0.001;
order xyz;
}
manualCoeffs
{
dataFile "";
}
distributed no;
roots ( );
// ************************************************************************* //

View File

@ -0,0 +1 @@
backgroundMeshDecomposition/decomposeParDict

View File

@ -11,12 +11,8 @@ nProc=$(getNumberOfProcessors)
cp $FOAM_TUTORIALS/resources/geometry/flange.stl.gz constant/triSurface/
# Create tight-fitting background mesh
runApplication blockMesh
runApplication topoSet -dict system/topoSetDict-background
mv log.topoSet log.topoSet.background
runApplication subsetMesh background -patch walls -overwrite
runApplication decomposePar
runApplication blockMesh -region backgroundMeshDecomposition
runApplication decomposePar -region backgroundMeshDecomposition
runParallel foamyHexMesh $nProc
runParallel collapseEdges $nProc -latestTime -collapseFaces

View File

@ -9,20 +9,38 @@ FoamFile
{
version 2.0;
format ascii;
class polyBoundaryMesh;
location "constant/polyMesh";
object boundary;
class dictionary;
location "system";
object decomposeParDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
1
(
walls
{
type wall;
nFaces 126;
startFace 207;
}
)
numberOfSubdomains 8;
//method scotch;
method hierarchical;
simpleCoeffs
{
n ( 2 2 2 );
delta 0.001;
}
hierarchicalCoeffs
{
n ( 2 2 2 );
delta 0.001;
order xyz;
}
manualCoeffs
{
dataFile "";
}
distributed no;
roots ( );
// ************************************************************************* //

View File

@ -0,0 +1 @@
../fvSchemes

View File

@ -0,0 +1 @@
../fvSolution

View File

@ -1,46 +0,0 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: dev |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
location "system";
object decomposeParDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
numberOfSubdomains 8;
//method scotch;
method hierarchical;
simpleCoeffs
{
n ( 2 2 2 );
delta 0.001;
}
hierarchicalCoeffs
{
n ( 2 2 2 );
delta 0.001;
order xyz;
}
manualCoeffs
{
dataFile "";
}
distributed no;
roots ( );
// ************************************************************************* //

View File

@ -0,0 +1 @@
backgroundMeshDecomposition/decomposeParDict

View File

@ -43,8 +43,8 @@ mv log.surfaceBooleanFeatures log.surfaceBooleanFeatures.stirrer_shaftRotating
runApplication surfaceFeatureExtract
runApplication blockMesh
runApplication decomposePar
runApplication blockMesh -region backgroundMeshDecomposition
runApplication decomposePar -region backgroundMeshDecomposition
runParallel foamyHexMesh $nProcs

View File

@ -0,0 +1,47 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: dev |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
location "system";
object decomposeParDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
numberOfSubdomains 8;
//method ptscotch;
//method hierarchical;
method scotch;
simpleCoeffs
{
n ( 2 2 1 );
delta 0.001;
}
hierarchicalCoeffs
{
n ( 2 2 2 );
delta 0.001;
order xyz;
}
manualCoeffs
{
dataFile "";
}
distributed no;
roots ( );
// ************************************************************************* //

View File

@ -1,47 +0,0 @@
/*--------------------------------*- C++ -*----------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: dev |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
location "system";
object decomposeParDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
numberOfSubdomains 8;
//method ptscotch;
//method hierarchical;
method scotch;
simpleCoeffs
{
n ( 2 2 1 );
delta 0.001;
}
hierarchicalCoeffs
{
n ( 2 2 2 );
delta 0.001;
order xyz;
}
manualCoeffs
{
dataFile "";
}
distributed no;
roots ( );
// ************************************************************************* //

View File

@ -0,0 +1 @@
backgroundMeshDecomposition/decomposeParDict