Merge branch 'master' of /home/noisy3/OpenFOAM/OpenFOAM-dev

Conflicts:
	src/OpenFOAM/containers/Lists/DynamicList/DynamicList.H
	src/postProcessing/functionObjects/field/fieldValues/cellSource/cellSource.C
	src/postProcessing/functionObjects/field/fieldValues/faceSource/faceSource.C

applications/solvers/combustion/PDRFoam/PDRModels/XiEqModels/basicXiSubXiEq/basicXiSubXiEq.H

@@ -128,8 +128,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~basicSubGrid();
 
 

applications/solvers/combustion/PDRFoam/PDRModels/XiGModels/basicXiSubG/basicXiSubG.H

@@ -107,8 +107,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~basicSubGrid();
 
 

applications/solvers/combustion/PDRFoam/PDRModels/dragModels/PDRDragModel/PDRDragModel.H

@@ -137,8 +137,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~PDRDragModel();
 
 

applications/solvers/combustion/PDRFoam/PDRModels/dragModels/basic/basic.H

@@ -135,8 +135,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~basic();
 
 

applications/solvers/combustion/PDRFoam/XiModels/XiEqModels/Gulder/Gulder.H

@@ -86,8 +86,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~Gulder();
 
 

applications/solvers/combustion/PDRFoam/XiModels/XiEqModels/SCOPEBlendXiEq/SCOPEBlendXiEq.H

@@ -91,8 +91,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~SCOPEBlend();
 
 

applications/solvers/combustion/PDRFoam/XiModels/XiEqModels/SCOPEXiEq/SCOPEXiEq.H

@@ -96,8 +96,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~SCOPEXiEq();
 
 

applications/solvers/combustion/PDRFoam/XiModels/XiEqModels/XiEqModel/XiEqModel.H

@@ -132,8 +132,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~XiEqModel();
 
 

applications/solvers/combustion/PDRFoam/XiModels/XiEqModels/instabilityXiEq/instabilityXiEq.H

@@ -90,8 +90,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~instability();
 
 

applications/solvers/combustion/PDRFoam/XiModels/XiGModels/KTS/KTS.H

@@ -85,8 +85,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~KTS();
 
 

applications/solvers/combustion/PDRFoam/XiModels/XiGModels/XiGModel/XiGModel.H

@@ -129,8 +129,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~XiGModel();
 
 

applications/solvers/combustion/PDRFoam/XiModels/XiGModels/instabilityG/instabilityG.H

@@ -94,8 +94,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~instabilityG();
 
 

applications/solvers/combustion/PDRFoam/XiModels/XiModel/XiModel.H

@@ -200,8 +200,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~XiModel();
 
 

applications/solvers/combustion/PDRFoam/XiModels/algebraic/algebraic.H

@@ -95,8 +95,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~algebraic();
 
 

applications/solvers/combustion/PDRFoam/XiModels/fixed/fixed.H

@@ -83,8 +83,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~fixed();
 
 

applications/solvers/combustion/PDRFoam/XiModels/transport/transport.H

@@ -95,8 +95,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~transport();
 
 

applications/solvers/combustion/PDRFoam/laminarFlameSpeed/SCOPE/SCOPELaminarFlameSpeed.H

@@ -194,7 +194,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
     ~SCOPE();
 
 

applications/solvers/combustion/fireFoam/combustionModels/infinitelyFastChemistry/infinitelyFastChemistry.H

@@ -88,8 +88,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~infinitelyFastChemistry();
 
 

applications/solvers/combustion/fireFoam/combustionModels/noCombustion/noCombustion.H

@@ -83,8 +83,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~noCombustion();
 
     // Member Functions

applications/solvers/heatTransfer/chtMultiRegionFoam/regionProperties/regionProperties.H

@@ -77,8 +77,7 @@ public:
         regionProperties(const Time& runTime);
 
 
-    // Destructor
+    //- Destructor
-
     ~regionProperties();
 
 

applications/solvers/multiphase/interMixingFoam/incompressibleThreePhaseMixture/threePhaseMixture.H

@@ -94,8 +94,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     ~threePhaseMixture()
     {}
 

applications/solvers/multiphase/interPhaseChangeFoam/phaseChangeTwoPhaseMixtures/Kunz/Kunz.H

@@ -96,8 +96,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~Kunz()
     {}
 

applications/solvers/multiphase/interPhaseChangeFoam/phaseChangeTwoPhaseMixtures/Merkle/Merkle.H

@@ -90,8 +90,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~Merkle()
     {}
 

applications/solvers/multiphase/interPhaseChangeFoam/phaseChangeTwoPhaseMixtures/SchnerrSauer/SchnerrSauer.H

@@ -103,8 +103,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~SchnerrSauer()
     {}
 

applications/solvers/multiphase/interPhaseChangeFoam/phaseChangeTwoPhaseMixtures/phaseChangeTwoPhaseMixture/phaseChangeTwoPhaseMixture.H

@@ -121,8 +121,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~phaseChangeTwoPhaseMixture()
     {}
 

applications/solvers/multiphase/multiphaseInterFoam/multiphaseMixture/multiphaseMixture.H

@@ -209,8 +209,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     ~multiphaseMixture()
     {}
 

applications/test/DLList/DLListTest.C

@@ -51,12 +51,7 @@ int main(int argc, char *argv[])
 
     Info<< nl << "And again using STL iterator: " << nl << endl;
 
-    for
+    forAllIter(DLList<scalar>, myList, iter)
-    (
-        DLList<scalar>::iterator iter = myList.begin();
-        iter != myList.end();
-        ++iter
-    )
     {
         Info<< "element:" << *iter << endl;
     }
@@ -64,12 +59,7 @@ int main(int argc, char *argv[])
 
     Info<< nl << "And again using the same STL iterator: " << nl << endl;
 
-    for
+    forAllIter(DLList<scalar>, myList, iter)
-    (
-        DLList<scalar>::iterator iter = myList.begin();
-        iter != myList.end();
-        ++iter
-    )
     {
         Info<< "Removing " << myList.remove(iter) << endl;
     }
@@ -82,12 +72,7 @@ int main(int argc, char *argv[])
 
     const DLList<scalar>& const_myList = myList;
 
-    for
+    forAllConstIter(DLList<scalar>, const_myList, iter)
-    (
-        DLList<scalar>::const_iterator iter = const_myList.begin();
-        iter != const_myList.end();
-        ++iter
-    )
     {
         Info<< "element:" << *iter << endl;
     }
@@ -95,12 +80,7 @@ int main(int argc, char *argv[])
     myList.swapUp(myList.DLListBase::first());
     myList.swapUp(myList.DLListBase::last());
 
-    for
+    forAllConstIter(DLList<scalar>, const_myList, iter)
-    (
-        DLList<scalar>::const_iterator iter = const_myList.begin();
-        iter != const_myList.end();
-        ++iter
-    )
     {
         Info<< "element:" << *iter << endl;
     }
@@ -108,19 +88,14 @@ int main(int argc, char *argv[])
     myList.swapDown(myList.DLListBase::first());
     myList.swapDown(myList.DLListBase::last());
 
-    for
+    forAllConstIter(DLList<scalar>, const_myList, iter)
-    (
-        DLList<scalar>::const_iterator iter = const_myList.begin();
-        iter != const_myList.end();
-        ++iter
-    )
     {
         Info<< "element:" << *iter << endl;
     }
 
 
-    Info<< nl << "Testing transfer: " << nl << endl;
+    Info<< nl << "Testing transfer: " << nl << nl
-    Info<< "original: " << myList << endl;
+        << "original: " << myList << endl;
 
     DLList<scalar> newList;
     newList.transfer(myList);

applications/test/Dictionary/DictionaryTest.C

@@ -114,12 +114,7 @@ int main(int argc, char *argv[])
 
     dict.swapDown(dict.first());
 
-    for
+    forAllConstIter(Dictionary<ent>, dict, iter)
-    (
-        Dictionary<ent>::const_iterator iter = dict.begin();
-        iter != dict.end();
-        ++iter
-    )
     {
         Info<< "element : " << *iter;
     }
@@ -159,12 +154,7 @@ int main(int argc, char *argv[])
     }
 
     Info<< nl << "scalarDict1: " << endl;
-    for
+    forAllConstIter(PtrDictionary<Scalar>, scalarDict, iter)
-    (
-        PtrDictionary<Scalar>::const_iterator iter = scalarDict.begin();
-        iter != scalarDict.end();
-        ++iter
-    )
     {
         Info<< " = " << iter() << endl;
     }
@@ -176,12 +166,7 @@ int main(int argc, char *argv[])
         scalarDict2.insert(key, new Scalar(1.3*i));
     }
     Info<< nl << "scalarDict2: " << endl;
-    for
+    forAllConstIter(PtrDictionary<Scalar>, scalarDict2, iter)
-    (
-        PtrDictionary<Scalar>::const_iterator iter = scalarDict2.begin();
-        iter != scalarDict2.end();
-        ++iter
-    )
     {
         Info<< "elem = " << *iter << endl;
     }

applications/test/ISLList/ISLListTest.C

@@ -78,12 +78,7 @@ int main(int argc, char *argv[])
 
     Info<< nl << "And again using STL iterator: " << nl << endl;
 
-    for
+    forAllIter(SLList<scalar>, myList, iter)
-    (
-        SLList<scalar>::iterator iter = myList.begin();
-        iter != myList.end();
-        ++iter
-    )
     {
         Info<< "element:" << *iter << endl;
     }
@@ -92,14 +87,9 @@ int main(int argc, char *argv[])
 
     const ISLList<Scalar>& const_myList = myList;
 
-    for
+    forAllConstIter(SLList<scalar>, const_myList, iter)
-    (
-        SLList<scalar>::const_iterator iter2 = const_myList.begin();
-        iter2 != const_myList.end();
-        ++iter2
-    )
     {
-        Info<< "element:" << *iter2 << endl;
+        Info<< "element:" << *iter << endl;
     }
 
 

applications/test/PackedList2/PackedListTest2.C

@@ -188,12 +188,7 @@ int main(int argc, char *argv[])
     sum = 0;
     for (label iter = 0; iter < nIters; ++iter)
     {
-        for
+        forAllIter(PackedBoolList, packed, it)
-        (
-            PackedBoolList::iterator it = packed.begin();
-            it != packed.end();
-            ++it
-        )
         {
             sum += it;
         }
@@ -207,12 +202,7 @@ int main(int argc, char *argv[])
     sum = 0;
     for (label iter = 0; iter < nIters; ++iter)
     {
-        for
+        forAllConstIter(PackedBoolList, packed, cit)
-        (
-            PackedBoolList::const_iterator cit = packed.cbegin();
-            cit != packed.cend();
-            ++cit
-        )
         {
             sum += cit();
         }
@@ -333,12 +323,7 @@ int main(int argc, char *argv[])
     // Write packed
     for (label iter = 0; iter < nIters; ++iter)
     {
-        for
+        forAllIter(PackedBoolList, packed, it)
-        (
-            PackedBoolList::iterator it = packed.begin();
-            it != packed.end();
-            ++it
-        )
         {
             it() = 1;
         }

applications/test/SLList/SLListTest.C

@@ -51,12 +51,7 @@ int main(int argc, char *argv[])
 
     Info<< nl << "And again using STL iterator: " << nl << endl;
 
-    for
+    forAllIter(SLList<scalar>, myList, iter)
-    (
-        SLList<scalar>::iterator iter = myList.begin();
-        iter != myList.end();
-        ++iter
-    )
     {
         Info<< "element:" << *iter << endl;
     }
@@ -65,39 +60,23 @@ int main(int argc, char *argv[])
 
     const SLList<scalar>& const_myList = myList;
 
-    for
+    forAllConstIter(SLList<scalar>, const_myList, iter)
-    (
-        SLList<scalar>::const_iterator iter2 = const_myList.begin();
-        iter2 != const_myList.end();
-        ++iter2
-    )
     {
-        Info<< "element:" << *iter2 << endl;
+        Info<< "element:" << *iter << endl;
     }
 
-    for
+    forAllIter(SLList<scalar>, myList, iter)
-    (
-        SLList<scalar>::iterator iter = myList.begin();
-        iter != myList.end();
-        ++iter
-    )
     {
         Info<< "Removing element:" << *iter << endl;
         myList.remove(iter);
     }
 
-    for
+    forAllConstIter(SLList<scalar>, const_myList, iter)
-    (
-        SLList<scalar>::const_iterator iter2 = const_myList.begin();
-        iter2 != const_myList.end();
-        ++iter2
-    )
     {
-        Info<< "element:" << *iter2 << endl;
+        Info<< "element:" << *iter << endl;
     }
 
 
-
     for (int i = 0; i<10; i++)
     {
         myList.append(1.3*i);

applications/test/UDictionary/UDictionaryTest.C

@@ -81,12 +81,7 @@ int main(int argc, char *argv[])
 
     dict.swapDown(dict.first());
 
-    for
+    forAllConstIter(UDictionary<ent>, dict, iter)
-    (
-        UDictionary<ent>::const_iterator iter = dict.begin();
-        iter != dict.end();
-        ++iter
-    )
     {
         Info<< "element : " << *iter;
     }

applications/utilities/mesh/advanced/autoRefineMesh/autoRefineMesh.C

@@ -292,20 +292,14 @@ void addCutNeighbours
 
     labelHashSet addCutFaces(cutCells.size());
 
-    for
+    forAllConstIter(labelHashSet, cutCells, iter)
-    (
-        labelHashSet::const_iterator iter = cutCells.begin();
-        iter != cutCells.end();
-        ++iter
-    )
     {
-        label cellI = iter.key();
+        const label cellI = iter.key();
-
         const labelList& cFaces = mesh.cells()[cellI];
 
         forAll(cFaces, i)
         {
-            label faceI = cFaces[i];
+            const label faceI = cFaces[i];
 
             if (mesh.isInternalFace(faceI))
             {
@@ -331,12 +325,7 @@ void addCutNeighbours
     Info<< "    Selected an additional " << addCutFaces.size()
         << " neighbours of cutCells to refine" << endl;
 
-    for
+    forAllConstIter(labelHashSet, addCutFaces, iter)
-    (
-        labelHashSet::const_iterator iter = addCutFaces.begin();
-        iter != addCutFaces.end();
-        ++iter
-    )
     {
         cutCells.insert(iter.key());
     }
@@ -386,21 +375,15 @@ bool limitRefinementLevel
 
     labelHashSet addCutCells(cutCells.size());
 
-    for
+    forAllConstIter(labelHashSet, cutCells, iter)
-    (
-        labelHashSet::const_iterator iter = cutCells.begin();
-        iter != cutCells.end();
-        ++iter
-    )
     {
         // cellI will be refined.
-        label cellI = iter.key();
+        const label cellI = iter.key();
-
         const labelList& cCells = mesh.cellCells()[cellI];
 
         forAll(cCells, i)
         {
-            label nbr = cCells[i];
+            const label nbr = cCells[i];
 
             if (!excludeCells.found(nbr) && !cutCells.found(nbr))
             {
@@ -419,12 +402,8 @@ bool limitRefinementLevel
         Info<< "Added an additional " << addCutCells.size() << " cells"
             << " to satisfy 1:" << limitDiff << " refinement level"
             << endl;
-        for
+
-        (
+        forAllConstIter(labelHashSet, addCutCells, iter)
-            labelHashSet::const_iterator iter = addCutCells.begin();
-            iter != addCutCells.end();
-            ++iter
-        )
         {
             cutCells.insert(iter.key());
         }

applications/utilities/mesh/advanced/modifyMesh/cellSplitter.H

@@ -108,8 +108,7 @@ public:
         cellSplitter(const polyMesh& mesh);
 
 
-    // Destructor
+    //- Destructor
-
     ~cellSplitter();
 
 

applications/utilities/mesh/advanced/refineWallLayer/refineWallLayer.C

@@ -112,12 +112,7 @@ int main(int argc, char *argv[])
             << cells.instance()/cells.local()/cells.name()
             << nl << endl;
 
-        for
+        forAllConstIter(cellSet, cells, iter)
-        (
-            cellSet::const_iterator iter = cells.begin();
-            iter != cells.end();
-            ++iter
-        )
         {
             cutCells.erase(iter.key());
         }
@@ -131,7 +126,7 @@ int main(int argc, char *argv[])
 
     forAll(meshPoints, pointI)
     {
-        label meshPointI = meshPoints[pointI];
+        const label meshPointI = meshPoints[pointI];
 
         vertOnPatch[meshPointI] = true;
     }
@@ -151,8 +146,7 @@ int main(int argc, char *argv[])
 
         forAll(pEdges, pEdgeI)
         {
-            label edgeI = pEdges[pEdgeI];
+            const label edgeI = pEdges[pEdgeI];
-
             const edge& e = mesh.edges()[edgeI];
 
             label otherPointI = e.otherVertex(meshPointI);

applications/utilities/mesh/advanced/splitCells/splitCells.C

@@ -392,15 +392,9 @@ void collectCuts
     boolList edgeIsCut(mesh.nEdges(), false);
     scalarField edgeWeight(mesh.nEdges(), -GREAT);
 
-    for
+    forAllConstIter(cellSet, cellsToCut, iter)
-    (
-        cellSet::const_iterator iter = cellsToCut.begin();
-        iter != cellsToCut.end();
-        ++iter
-    )
     {
-        label cellI = iter.key();
+        const label cellI = iter.key();
-
         const labelList& cEdges = cellEdges[cellI];
 
         forAll(cEdges, i)

applications/utilities/mesh/conversion/ansysToFoam/ansysToFoam.L

@@ -269,12 +269,7 @@ int main(int argc, char *argv[])
     pointField points(slPoints.size());
 
     label i = 0;
-    for
+    forAllConstIter(SLList<point>, slPoints, pointIter)
-    (
-        SLList<point>::iterator pointIter = slPoints.begin();
-        pointIter != slPoints.end();
-        ++pointIter
-    )
     {
         // Scale points for the given scale factor
         points[i++] = scaleFactor * pointIter();
@@ -284,12 +279,7 @@ int main(int argc, char *argv[])
     labelList pointMap(maxNodei+1);
 
     i = 0;
-    for
+    forAllConstIter(SLList<label>, slPointMap, pointMapIter)
-    (
-        SLList<label>::iterator pointMapIter = slPointMap.begin();
-        pointMapIter != slPointMap.end();
-        ++pointMapIter
-    )
     {
         pointMap[pointMapIter()] = i++;
     }
@@ -299,12 +289,7 @@ int main(int argc, char *argv[])
     labelList cellMap(maxCelli+1);
 
     i = 0;
-    for
+    forAllConstIter(SLList<label>, slCellMap, cellMapIter)
-    (
-        SLList<label>::iterator cellMapIter = slCellMap.begin();
-        cellMapIter != slCellMap.end();
-        ++cellMapIter
-    )
     {
         cellMap[cellMapIter()] = i++;
     }
@@ -323,12 +308,7 @@ int main(int argc, char *argv[])
     cellShapeList cellShapes(slCellLabels.size());
     label nCells = 0;
 
-    for
+    forAllConstIter(SLPtrList<labelList>, slCellLabels, cellIter)
-    (
-        SLPtrList<labelList>::iterator cellIter = slCellLabels.begin();
-        cellIter != slCellLabels.end();
-        ++cellIter
-    )
     {
         if      // Tetrahedron
         (

applications/utilities/mesh/conversion/cfx4ToFoam/block.H

@@ -100,8 +100,7 @@ public:
             return autoPtr<block>(NULL);
         }
 
-    // Destructor
+    //- Destructor
-
     ~block();
 
 

applications/utilities/mesh/conversion/kivaToFoam/readKivaGrid.H

@@ -327,12 +327,7 @@ if
 {
     scalar minz = GREAT;
 
-    for
+    forAllConstIter(SLList<face>, pFaces[CYLINDERHEAD][0], iter)
-    (
-        SLList<face>::iterator iter = pFaces[CYLINDERHEAD][0].begin();
-        iter != pFaces[CYLINDERHEAD][0].end();
-        ++iter
-    )
     {
         const face& pf = iter();
 
@@ -346,12 +341,7 @@ if
 
     SLList<face> newLinerFaces;
 
-    for
+    forAllConstIter(SLList<face>, pFaces[LINER][0], iter)
-    (
-        SLList<face>::iterator iter = pFaces[LINER][0].begin();
-        iter != pFaces[LINER][0].end();
-        ++iter
-    )
     {
         const face& pf = iter();
 
@@ -380,12 +370,7 @@ if
 
     SLList<face> newCylinderHeadFaces;
 
-    for
+    forAllConstIter(SLList<face>, pFaces[CYLINDERHEAD][0], iter)
-    (
-        SLList<face>::iterator iter = pFaces[CYLINDERHEAD][0].begin();
-        iter != pFaces[CYLINDERHEAD][0].end();
-        ++iter
-    )
     {
         const face& pf = iter();
 
@@ -456,12 +441,7 @@ if (pFaces[WEDGE].size() && pFaces[WEDGE][0].size())
     {
         pFaces[CYCLIC].setSize(1);
         pFaces[CYCLIC][0] = pFaces[WEDGE][0];
-        for
+        forAllIter(SLList<face>, pFaces[WEDGE][1], iterb)
-        (
-            SLList<face>::iterator iterb = pFaces[WEDGE][1].begin();
-            iterb != pFaces[WEDGE][1].end();
-            ++iterb
-        )
         {
             pFaces[CYCLIC][0].append(iterb());
         }

applications/utilities/mesh/conversion/sammToFoam/sammMesh.H

@@ -238,8 +238,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     ~sammMesh();
 
 

applications/utilities/mesh/conversion/star3ToFoam/starMesh.H

@@ -299,8 +299,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     ~starMesh();
 
 

applications/utilities/mesh/conversion/tetgenToFoam/tetgenToFoam.C

@@ -468,12 +468,7 @@ int main(int argc, char *argv[])
          // Print region to patch mapping
         Info<< "Regions:" << endl;
 
-        for
+        forAllConstIter(Map<label>, regionToPatch, iter)
-        (
-            Map<label>::const_iterator iter = regionToPatch.begin();
-            iter != regionToPatch.end();
-            ++iter
-        )
         {
             Info<< "    region:" << iter.key() << '\t' << "patch:"
                 << iter() << endl;

applications/utilities/mesh/conversion/writeMeshObj/writeMeshObj.C

@@ -356,12 +356,7 @@ void writePointCells
 
     label vertI = 0;
 
-    for
+    forAllConstIter(labelHashSet, allEdges, iter)
-    (
-        labelHashSet::const_iterator iter = allEdges.begin();
-        iter != allEdges.end();
-        ++iter
-    )
     {
         const edge& e = mesh.edges()[iter.key()];
 

applications/utilities/mesh/generation/extrudeToRegionMesh/extrudeToRegionMesh.C

@@ -143,12 +143,7 @@ void addPatchFields(fvMesh& mesh, const word& patchFieldType)
         mesh.objectRegistry::lookupClass<GeoField>()
     );
 
-    for
+    forAllConstIter(typename HashTable<const GeoField*>, flds, iter)
-    (
-        typename HashTable<const GeoField*>::const_iterator iter = flds.begin();
-        iter != flds.end();
-        ++iter
-    )
     {
         const GeoField& fld = *iter();
 
@@ -183,12 +178,7 @@ void trimPatchFields(fvMesh& mesh, const label nPatches)
         mesh.objectRegistry::lookupClass<GeoField>()
     );
 
-    for
+    forAllConstIter(typename HashTable<const GeoField*>, flds, iter)
-    (
-        typename HashTable<const GeoField*>::const_iterator iter = flds.begin();
-        iter != flds.end();
-        ++iter
-    )
     {
         const GeoField& fld = *iter();
 
@@ -209,12 +199,7 @@ void reorderPatchFields(fvMesh& mesh, const labelList& oldToNew)
         mesh.objectRegistry::lookupClass<GeoField>()
     );
 
-    for
+    forAllConstIter(typename HashTable<const GeoField*>, flds, iter)
-    (
-        typename HashTable<const GeoField*>::const_iterator iter = flds.begin();
-        iter != flds.end();
-        ++iter
-    )
     {
         const GeoField& fld = *iter();
 

applications/utilities/mesh/manipulation/mergeMeshes/mergePolyMesh.H

@@ -102,8 +102,7 @@ public:
         mergePolyMesh(const IOobject& io);
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~mergePolyMesh()
     {}
 

applications/utilities/mesh/manipulation/mirrorMesh/mirrorFvMesh.H

@@ -76,8 +76,7 @@ public:
         mirrorFvMesh(const IOobject& io);
 
 
-    // Destructor
+    //- Destructor
-
     ~mirrorFvMesh();
 
 

applications/utilities/mesh/manipulation/setsToZones/setsToZones.C

@@ -100,12 +100,7 @@ int main(int argc, char *argv[])
 
     //Pout<< "pointSets:" << pointObjects.names() << endl;
 
-    for
+    forAllConstIter(IOobjectList, pointObjects, iter)
-    (
-        IOobjectList::const_iterator iter = pointObjects.begin();
-        iter != pointObjects.end();
-        ++iter
-    )
     {
         // Not in memory. Load it.
         pointSet set(*iter());
@@ -149,12 +144,7 @@ int main(int argc, char *argv[])
 
     //Pout<< "faceSets:" << faceObjects.names() << endl;
 
-    for
+    forAllConstIter(IOobjectList, faceObjects, iter)
-    (
-        IOobjectList::const_iterator iter = faceObjects.begin();
-        iter != faceObjects.end();
-        ++iter
-    )
     {
         // Not in memory. Load it.
         faceSet set(*iter());
@@ -288,12 +278,7 @@ int main(int argc, char *argv[])
 
     //Pout<< "cellSets:" << cellObjects.names() << endl;
 
-    for
+    forAllConstIter(IOobjectList, cellObjects, iter)
-    (
-        IOobjectList::const_iterator iter = cellObjects.begin();
-        iter != cellObjects.end();
-        ++iter
-    )
     {
         if (!slaveCellSets.found(iter.key()))
         {

applications/utilities/mesh/manipulation/splitMesh/regionSide.C

@@ -81,8 +81,7 @@ Foam::label Foam::regionSide::otherEdge
 
     forAll(fEdges, fEdgeI)
     {
-        label otherEdgeI = fEdges[fEdgeI];
+        const label otherEdgeI = fEdges[fEdgeI];
-
         const edge& otherE = mesh.edges()[otherEdgeI];
 
         if
@@ -300,15 +299,9 @@ void Foam::regionSide::walkAllPointConnectedFaces
     //
     labelHashSet regionEdges(4*regionFaces.size());
 
-    for
+    forAllConstIter(labelHashSet, regionFaces, iter)
-    (
-        labelHashSet::const_iterator iter = regionFaces.begin();
-        iter != regionFaces.end();
-        ++iter
-    )
     {
-        label faceI = iter.key();
+        const label faceI = iter.key();
-
         const labelList& fEdges = mesh.faceEdges()[faceI];
 
         forAll(fEdges, fEdgeI)
@@ -326,12 +319,7 @@ void Foam::regionSide::walkAllPointConnectedFaces
     labelHashSet visitedPoint(4*regionFaces.size());
 
     // Insert fence points so we don't visit them
-    for
+    forAllConstIter(labelHashSet, fencePoints, iter)
-    (
-        labelHashSet::const_iterator iter = fencePoints.begin();
-        iter != fencePoints.end();
-        ++iter
-    )
     {
         visitedPoint.insert(iter.key());
     }
@@ -344,14 +332,9 @@ void Foam::regionSide::walkAllPointConnectedFaces
         Info<< "Excluding visit of points:" << visitedPoint << endl;
     }
 
-    for
+    forAllConstIter(labelHashSet, regionFaces, iter)
-    (
-        labelHashSet::const_iterator iter = regionFaces.begin();
-        iter != regionFaces.end();
-        ++iter
-    )
     {
-        label faceI = iter.key();
+        const label faceI = iter.key();
 
         // Get side of face.
         label cellI;
@@ -459,12 +442,7 @@ Foam::regionSide::regionSide
 
     labelHashSet fencePoints(fenceEdges.size());
 
-    for
+    forAllConstIter(labelHashSet, fenceEdges, iter)
-    (
-        labelHashSet::const_iterator iter = fenceEdges.begin();
-        iter != fenceEdges.end();
-        ++iter
-    )
     {
         const edge& e = mesh.edges()[iter.key()];
 

applications/utilities/mesh/manipulation/splitMeshRegions/splitMeshRegions.C

@@ -99,12 +99,7 @@ void addPatchFields(fvMesh& mesh, const word& patchFieldType)
         mesh.objectRegistry::lookupClass<GeoField>()
     );
 
-    for
+    forAllConstIter(typename HashTable<const GeoField*>, flds, iter)
-    (
-        typename HashTable<const GeoField*>::const_iterator iter = flds.begin();
-        iter != flds.end();
-        ++iter
-    )
     {
         const GeoField& fld = *iter();
 
@@ -139,12 +134,7 @@ void trimPatchFields(fvMesh& mesh, const label nPatches)
         mesh.objectRegistry::lookupClass<GeoField>()
     );
 
-    for
+    forAllConstIter(typename HashTable<const GeoField*>, flds, iter)
-    (
-        typename HashTable<const GeoField*>::const_iterator iter = flds.begin();
-        iter != flds.end();
-        ++iter
-    )
     {
         const GeoField& fld = *iter();
 
@@ -165,12 +155,7 @@ void reorderPatchFields(fvMesh& mesh, const labelList& oldToNew)
         mesh.objectRegistry::lookupClass<GeoField>()
     );
 
-    for
+    forAllConstIter(typename HashTable<const GeoField*>, flds, iter)
-    (
-        typename HashTable<const GeoField*>::const_iterator iter = flds.begin();
-        iter != flds.end();
-        ++iter
-    )
     {
         const GeoField& fld = *iter();
 

applications/utilities/miscellaneous/foamInfoExec/foamInfoExec.C

@@ -76,12 +76,7 @@ int main(int argc, char *argv[])
 
             if (args.optionFound("keywords") && !args.optionFound("entry"))
             {
-                for
+                forAllConstIter(dictionary, dict, iter)
-                (
-                    IDLList<entry>::iterator iter = dict.begin();
-                    iter != dict.end();
-                    ++iter
-                )
                 {
                     Info<< iter().keyword() << endl;
                 }
@@ -137,13 +132,8 @@ int main(int argc, char *argv[])
                         }
                         */
 
-                        const dictionary& dict(entPtr->dict());
+                        const dictionary& dict = entPtr->dict();
-                        for
+                        forAllConstIter(dictionary, dict, iter)
-                        (
-                            IDLList<entry>::const_iterator iter = dict.begin();
-                            iter != dict.end();
-                            ++iter
-                        )
                         {
                             Info<< iter().keyword() << endl;
                         }

applications/utilities/parallelProcessing/decomposePar/domainDecomposition.H

@@ -126,8 +126,7 @@ public:
         domainDecomposition(const IOobject& io);
 
 
-    // Destructor
+    //- Destructor
-
     ~domainDecomposition();
 
 

applications/utilities/parallelProcessing/decomposePar/domainDecompositionMesh.C

@@ -506,12 +506,7 @@ void Foam::domainDecomposition::decomposeMesh()
             // Add internal and boundary faces
             // Remember to increment the index by one such that the
             // turning index works properly.
-            for
+            forAllConstIter(SLList<label>, curProcFaces, curProcFacesIter)
-            (
-                SLList<label>::iterator curProcFacesIter = curProcFaces.begin();
-                curProcFacesIter != curProcFaces.end();
-                ++curProcFacesIter
-            )
             {
                 curProcFaceAddressing[nFaces] = curProcFacesIter() + 1;
                 nFaces++;
@@ -564,12 +559,11 @@ void Foam::domainDecomposition::decomposeMesh()
 
                 // add faces for this processor boundary
 
-                for
+                forAllConstIter
                 (
-                    SLList<label>::iterator curFacesIter =
+                    SLList<label>,
-                        curInterProcBFacesIter().begin();
+                    curInterProcBFacesIter(),
-                    curFacesIter != curInterProcBFacesIter().end();
+                    curFacesIter
-                    ++curFacesIter
                 )
                 {
                     // add the face

applications/utilities/parallelProcessing/decomposePar/fvFieldDecomposer.H

@@ -230,8 +230,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     ~fvFieldDecomposer();
 
 

applications/utilities/parallelProcessing/decomposePar/lagrangianFieldDecomposer.C

@@ -55,7 +55,7 @@ Foam::lagrangianFieldDecomposer::lagrangianFieldDecomposer
         {
             SLList<indexedParticle*>& particlePtrs = *cellParticles[celli];
 
-            forAllIter(SLList<indexedParticle*>, particlePtrs, iter)
+            forAllConstIter(SLList<indexedParticle*>, particlePtrs, iter)
             {
                 const indexedParticle& ppi = *iter();
                 particleIndices_[pi++] = ppi.index();

applications/utilities/parallelProcessing/decomposePar/pointFieldDecomposer.H

@@ -138,8 +138,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     ~pointFieldDecomposer();
 
 

applications/utilities/parallelProcessing/decomposePar/readFields.C

@@ -48,22 +48,13 @@ void Foam::readFields
     // Construct the vol scalar fields
     fields.setSize(fieldObjects.size());
 
-    label fieldi=0;
+    label fieldI = 0;
-    for
+    forAllIter(IOobjectList, fieldObjects, iter)
-    (
-        IOobjectList::iterator iter = fieldObjects.begin();
-        iter != fieldObjects.end();
-        ++iter
-    )
     {
         fields.set
         (
-            fieldi++,
+            fieldI++,
-            new GeoField
+            new GeoField(*iter(), mesh)
-            (
-                *iter(),
-                mesh
-            )
         );
     }
 }

applications/utilities/postProcessing/dataConversion/foamDataToFluent/foamDataToFluent.C

@@ -110,36 +110,23 @@ int main(int argc, char *argv[])
         // Search list of objects for volScalarFields
         IOobjectList scalarFields(objects.lookupClass("volScalarField"));
 
-        for
+        forAllIter(IOobjectList, scalarFields, iter)
-        (
-            IOobjectList::iterator scalarFieldIter = scalarFields.begin();
-            scalarFieldIter != scalarFields.end();
-            ++scalarFieldIter
-        )
         {
             // Read field
-            volScalarField field
+            volScalarField field(*iter(), mesh);
-            (
-                *scalarFieldIter(),
-                mesh
-            );
 
-            // lookup field from dictionary
+            // lookup field from dictionary and convert field
-            if (foamDataToFluentDict.found(field.name()))
+            label unitNumber;
-            {
+            if
-                label unitNumber
             (
-                    readLabel(foamDataToFluentDict.lookup(field.name()))
+                foamDataToFluentDict.readIfPresent(field.name(), unitNumber)
-                );
+             && unitNumber > 0
-
+            )
-                // Convert field
-                if (unitNumber > 0)
             {
                 Info<< "    Converting field " << field.name() << endl;
                 writeFluentField(field, unitNumber, fluentDataFile);
             }
         }
-        }
 
 
         // Converting volVectorField
@@ -148,36 +135,23 @@ int main(int argc, char *argv[])
         // Search list of objects for volVectorFields
         IOobjectList vectorFields(objects.lookupClass("volVectorField"));
 
-        for
+        forAllIter(IOobjectList, vectorFields, iter)
-        (
-            IOobjectList::iterator vectorFieldIter = vectorFields.begin();
-            vectorFieldIter != vectorFields.end();
-            ++vectorFieldIter
-        )
         {
             // Read field
-            volVectorField field
+            volVectorField field(*iter(), mesh);
-            (
-                *vectorFieldIter(),
-                mesh
-            );
 
-            // lookup field from dictionary
+            // lookup field from dictionary and convert field
-            if (foamDataToFluentDict.found(field.name()))
+            label unitNumber;
-            {
+            if
-                label unitNumber
             (
-                    readLabel(foamDataToFluentDict.lookup(field.name()))
+                foamDataToFluentDict.readIfPresent(field.name(), unitNumber)
-                );
+             && unitNumber > 0
-
+            )
-                // Convert field
-                if (unitNumber > 0)
             {
                 Info<< "    Converting field " << field.name() << endl;
                 writeFluentField(field, unitNumber, fluentDataFile);
             }
         }
-        }
 
         Info<< endl;
     }

applications/utilities/postProcessing/dataConversion/foamToGMV/gmvOutput.H

@@ -22,11 +22,11 @@ for (label i=0; i < nTypes; i++)
 
         if (fieldTypes[i] == "volScalarField")
         {
-            volScalarField gmvScalarField(fieldObject, mesh);
+            volScalarField fld(fieldObject, mesh);
             gmvFile << fieldName << " 0" << nl;
             for (label indx=0;indx<mesh.nCells();indx++)
             {
-                gmvFile << gmvScalarField[indx] << " ";
+                gmvFile << fld[indx] << " ";
             }
             gmvFile << nl;
         }
@@ -35,19 +35,19 @@ for (label i=0; i < nTypes; i++)
         {
             if (fieldName == vComp)
             {
-                volVectorField gmvVectorField(fieldObject, mesh);
+                volVectorField fld(fieldObject, mesh);
                 gmvFile << "velocity 0" << nl;
                 for (label indx=0;indx<mesh.nCells();indx++)
                 {
-                    gmvFile << gmvVectorField[indx].x() << " ";
+                    gmvFile << fld[indx].x() << " ";
                 }
                 for (label indx=0;indx<mesh.nCells();indx++)
                 {
-                    gmvFile << gmvVectorField[indx].y() << " ";
+                    gmvFile << fld[indx].y() << " ";
                 }
                 for (label indx=0;indx<mesh.nCells();indx++)
                 {
-                    gmvFile << gmvVectorField[indx].z() << " ";
+                    gmvFile << fld[indx].z() << " ";
                 }
                 gmvFile << nl;
             }

applications/utilities/postProcessing/dataConversion/foamToGMV/gmvOutputLagrangian.H

@@ -1,42 +1,27 @@
 gmvFile << "tracers " << particles.size() << nl;
-for
+forAllConstIter(Cloud<passiveParticle>, particles, iter)
-(
-    Cloud<passiveParticle>::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().position().x() << " ";
+    gmvFile << iter().position().x() << ' ';
 }
 gmvFile << nl;
 
-for
+forAllConstIter(Cloud<passiveParticle>, particles, iter)
-(
-    Cloud<passiveParticle>::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().position().y() << " ";
+    gmvFile << iter().position().y() << ' ';
 }
 gmvFile << nl;
 
-for
+forAllConstIter(Cloud<passiveParticle>, particles, iter)
-(
-    Cloud<passiveParticle>::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().position().z() << " ";
+    gmvFile << iter().position().z() << ' ';
 }
 gmvFile << nl;
 
 forAll(lagrangianScalarNames, i)
 {
-    word name = lagrangianScalarNames[i];
+    const word& name = lagrangianScalarNames[i];
 
-    IOField<scalar> s
+    IOField<scalar> fld
     (
         IOobject
         (
@@ -49,13 +34,13 @@ forAll(lagrangianScalarNames, i)
         )
     );
 
-    if (s.size())
+    if (fld.size())
     {
         gmvFile << name  << nl;
 
-        for (label n = 0; n < s.size(); n++)
+        forAll(fld, n)
         {
-            gmvFile << s[n] << token::SPACE;
+            gmvFile << fld[n] << token::SPACE;
         }
         gmvFile << nl;
     }
@@ -65,9 +50,9 @@ forAll(lagrangianScalarNames, i)
 
 forAll(lagrangianVectorNames, i)
 {
-    word name = lagrangianVectorNames[i];
+    const word& name = lagrangianVectorNames[i];
 
-    IOField<vector> v
+    IOField<vector> fld
     (
         IOobject
         (
@@ -80,29 +65,29 @@ forAll(lagrangianVectorNames, i)
         )
     );
 
-    if (v.size())
+    if (fld.size())
     {
         gmvFile << name + "x" << nl;
 
-        for (label n = 0; n < v.size(); n++)
+        forAll(fld, n)
         {
-            gmvFile << v[n].x() << token::SPACE;
+            gmvFile << fld[n].x() << token::SPACE;
         }
         gmvFile << nl;
 
         gmvFile << name + "y" << nl;
 
-        for (label n = 0; n < v.size(); n++)
+        forAll(fld, n)
         {
-            gmvFile << v[n].y() << token::SPACE;
+            gmvFile << fld[n].y() << token::SPACE;
         }
         gmvFile << nl;
 
         gmvFile << name + "z" << nl;
 
-        for (label n = 0; n < v.size(); n++)
+        forAll(fld, n)
         {
-            gmvFile << v[n].z() << token::SPACE;
+            gmvFile << fld[n].z() << token::SPACE;
         }
         gmvFile << nl;
     }

applications/utilities/postProcessing/dataConversion/foamToGMV/gmvOutputParcels.H

@@ -1,81 +1,48 @@
 gmvFile << "tracers " << particles.size() << nl;
-for
+forAllConstIter(discretePhase, particles, iter)
-(
-    discretePhase::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().position().x() << " ";
+    gmvFile << iter().position().x() << " ";
 }
 gmvFile << nl;
-for
+
-(
+forAllConstIter(discretePhase, particles, iter)
-    discretePhase::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().position().y() << " ";
+    gmvFile << iter().position().y() << " ";
 }
 gmvFile << nl;
-for
+
-(
+forAllConstIter(discretePhase, particles, iter)
-    discretePhase::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().position().z() << " ";
+    gmvFile << iter().position().z() << " ";
 }
 gmvFile << nl;
 
 gmvFile << "U" << nl;
-for
+forAllConstIter(discretePhase, particles, iter)
-(
-    discretePhase::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().velocity().x() << " ";
+    gmvFile << iter().velocity().x() << " ";
 }
 gmvFile << nl;
+
 gmvFile << "V" << nl;
-for
+forAllConstIter(discretePhase, particles, iter)
-(
-    discretePhase::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().velocity().y() << " ";
+    gmvFile << iter().velocity().y() << " ";
 }
 gmvFile << nl;
 
 gmvFile << "W" << nl;
-for
+forAllConstIter(discretePhase, particles, iter)
-(
-    discretePhase::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().velocity().z() << " ";
+{
+    gmvFile << iter().velocity().z() << " ";
 }
 gmvFile << nl;
 
 gmvFile << "Diam" << nl;
-
+forAllConstIter(discretePhase, particles, iter)
-for
-(
-    discretePhase::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().d() << " ";
+    gmvFile << iter().d() << " ";
 }
 
-
 gmvFile << "endtrace"<< nl;

applications/utilities/postProcessing/dataConversion/foamToGMV/gmvOutputSpray.H

@@ -1,32 +1,19 @@
 gmvFile << "tracers " << particles.size() << nl;
-for
+forAllConstIter(Cloud<passiveParticle>, particles, iter)
-(
-    Cloud<passiveParticle>::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().position().x() << " ";
+    gmvFile << iter().position().x() << " ";
 }
 gmvFile << nl;
-for
+
-(
+forAllConstIter(Cloud<passiveParticle>, particles, iter)
-    Cloud<passiveParticle>::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().position().y() << " ";
+    gmvFile << iter().position().y() << " ";
 }
 gmvFile << nl;
-for
+
-(
+forAllConstIter(Cloud<passiveParticle>, particles, iter)
-    Cloud<passiveParticles>::iterator elmnt = particles.begin();
-    elmnt != particles.end();
-    ++elmnt
-)
 {
-    gmvFile << elmnt().position().z() << " ";
+    gmvFile << iter().position().z() << " ";
 }
 gmvFile << nl;
 
@@ -51,15 +38,13 @@ forAll(lagrangianScalarNames, i)
     {
         gmvFile << name  << nl;
 
-        for (label n = 0; n < s.size(); n++)
+        forAll(s, n)
         {
             gmvFile << s[n] << token::SPACE;
         }
         gmvFile << nl;
     }
 
-
 }
 
-
 gmvFile << "endtrace"<< nl;

applications/utilities/postProcessing/dataConversion/foamToGMV/gmvOutputTail.H

@@ -1,2 +1,3 @@
-gmvFile << "probtime  " << runTime.timeName() << nl;
+gmvFile
-gmvFile << "endgmv" << nl;
+    << "probtime  " << runTime.timeName() << nl
+    << "endgmv" << nl;

applications/utilities/postProcessing/dataConversion/foamToGMV/readConversionProperties.H

@@ -33,6 +33,7 @@ if ( (format != "ascii") && (format != "ieeei4r8") )
         << abort(FatalError);
 
 }
+
 word cells
 (
     conversionProperties.lookup("cells")

applications/utilities/postProcessing/dataConversion/foamToTecplot360/readFields.C

@@ -50,12 +50,7 @@ void readFields
     label nFields = fields.size();
     fields.setSize(nFields + fieldObjects.size());
 
-    for
+    forAllIter(IOobjectList, fieldObjects, iter)
-    (
-        IOobjectList::iterator iter = fieldObjects.begin();
-        iter != fieldObjects.end();
-        ++iter
-    )
     {
         if (selectedFields.empty() || selectedFields.found(iter()->name()))
         {

applications/utilities/postProcessing/dataConversion/foamToVTK/readFields.C

@@ -50,12 +50,7 @@ void readFields
     fields.setSize(fieldObjects.size());
     label nFields = 0;
 
-    for
+    forAllIter(IOobjectList, fieldObjects, iter)
-    (
-        IOobjectList::iterator iter = fieldObjects.begin();
-        iter != fieldObjects.end();
-        ++iter
-    )
     {
         if (selectedFields.empty() || selectedFields.found(iter()->name()))
         {

applications/utilities/postProcessing/dataConversion/foamToVTK/writeFaceSet.C

@@ -27,14 +27,9 @@ License
 #include "OFstream.H"
 #include "writeFuns.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * * * Global Functions  * * * * * * * * * * * * * //
 
-void writeFaceSet
+void Foam::writeFaceSet
 (
     const bool binary,
     const vtkMesh& vMesh,
@@ -73,12 +68,7 @@ void writeFaceSet
     labelList setFaceLabels(set.size());
     label setFaceI = 0;
 
-    for
+    forAllConstIter(faceSet, set, iter)
-    (
-        faceSet::const_iterator iter = set.begin();
-        iter != set.end();
-        ++iter
-    )
     {
         setFaceLabels[setFaceI] = iter.key();
         setFaces[setFaceI] = faces[iter.key()];
@@ -139,8 +129,5 @@ void writeFaceSet
     writeFuns::write(pStream, binary, setFaceLabels);
 }
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
 
 // ************************************************************************* //

applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/PV3FoamReader/vtkPV3FoamReader.h

@@ -187,7 +187,6 @@ protected:
     );
 
     //- Get the mesh/fields for a particular time
-    //- Destructor
     virtual int RequestData
     (
         vtkInformation*,

applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3Foam.H

@@ -693,7 +693,6 @@ public:
 
 
     //- Destructor
-
     ~vtkPV3Foam();
 
 

applications/utilities/postProcessing/graphics/PV3Readers/PV3blockMeshReader/vtkPV3blockMesh/vtkPV3blockMesh.H

@@ -312,7 +312,6 @@ public:
 
 
     //- Destructor
-
     ~vtkPV3blockMesh();
 
 

applications/utilities/postProcessing/graphics/ensightFoamReader/USERD_get_part_coords.H

@@ -47,19 +47,13 @@ int USERD_get_part_coords
     }
     else if (part_number == nPatches+2)
     {
-
         label indx = 1;
 
-        for
+        forAllConstIter(Cloud<passiveParticle>, *sprayPtr, iter)
-        (
-            Cloud<passiveParticle>::iterator elmnt = sprayPtr->begin();
-            elmnt != sprayPtr->end();
-            ++elmnt
-        )
         {
-            coord_array[0][indx] = (float)elmnt().position().x();
+            coord_array[0][indx] = (float)iter().position().x();
-            coord_array[1][indx] = (float)elmnt().position().y();
+            coord_array[1][indx] = (float)iter().position().y();
-            coord_array[2][indx] = (float)elmnt().position().z();
+            coord_array[2][indx] = (float)iter().position().z();
             indx++;
         }
 

applications/utilities/postProcessing/graphics/ensightFoamReader/USERD_get_part_node_ids.H

@@ -35,12 +35,8 @@ int USERD_get_part_node_ids
     else if (part_number == nPatches+2)
     {
         label indx = 0;
-        for
+
-        (
+        forAllConstIter(Cloud<passiveParticle>, *sprayPtr, iter)
-            Cloud<passiveParticle>::iterator elmnt = sprayPtr->begin();
-            elmnt != sprayPtr->end();
-            ++elmnt
-        )
         {
             nodeid_array[indx] = indx + 1;
             indx++;

applications/utilities/postProcessing/graphics/fieldview9Reader/readerDatabase.H

@@ -116,8 +116,7 @@ public:
         readerDatabase();
 
 
-    // Destructor
+    //- Destructor
-
     ~readerDatabase();
 
 

applications/utilities/preProcessing/mapFields/MapConsistentVolFields.H

@@ -52,12 +52,7 @@ void MapConsistentVolFields
 
     IOobjectList fields = objects.lookupClass(fieldClassName);
 
-    for
+    forAllIter(IOobjectList, fields, fieldIter)
-    (
-        IOobjectList::iterator fieldIter = fields.begin();
-        fieldIter != fields.end();
-        ++fieldIter
-    )
     {
         Info<< "    interpolating " << fieldIter()->name()
             << endl;

applications/utilities/preProcessing/mapFields/MapVolFields.H

@@ -52,12 +52,7 @@ void MapVolFields
 
     IOobjectList fields = objects.lookupClass(fieldClassName);
 
-    for
+    forAllIter(IOobjectList, fields, fieldIter)
-    (
-        IOobjectList::iterator fieldIter = fields.begin();
-        fieldIter != fields.end();
-        ++fieldIter
-    )
     {
         IOobject fieldTargetIOobject
         (

applications/utilities/preProcessing/mapFields/UnMapped.H

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 1991-2009 OpenCFD Ltd.
+    \\  /    A nd           | Copyright (C) 1991-2010 OpenCFD Ltd.
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -39,12 +39,7 @@ void UnMapped(const IOobjectList& objects)
 {
     IOobjectList fields = objects.lookupClass(Type::typeName);
 
-    for
+    forAllConstIter(IOobjectList, fields, fieldIter)
-    (
-        IOobjectList::iterator fieldIter = fields.begin();
-        fieldIter != fields.end();
-        ++fieldIter
-    )
     {
         mvBak(fieldIter()->objectPath(), "unmapped");
     }

applications/utilities/surface/surfaceSplitNonManifolds/surfaceSplitNonManifolds.C

@@ -126,12 +126,7 @@ void dumpFaces
 
     OFstream os(fName);
 
-    for
+    forAllConstIter(Map<label>, connectedFaces, iter)
-    (
-        Map<label>::const_iterator iter = connectedFaces.begin();
-        iter != connectedFaces.end();
-        ++iter
-    )
     {
         const labelledTri& f = surf.localFaces()[iter.key()];
 
@@ -502,14 +497,9 @@ void calcPointVecs
 
     boolList edgeDone(surf.nEdges(), false);
 
-    for
+    forAllConstIter(Map<label>, faceToEdge, iter)
-    (
-        Map<label>::const_iterator iter = faceToEdge.begin();
-        iter != faceToEdge.end();
-        ++iter
-    )
     {
-        label edgeI = iter();
+        const label edgeI = iter();
 
         if (!edgeDone[edgeI])
         {
@@ -610,15 +600,9 @@ void renumberFaces
     List<labelledTri>& newTris
 )
 {
-    for
+    forAllConstIter(Map<label>, faceToEdge, iter)
-    (
-        Map<label>::const_iterator iter = faceToEdge.begin();
-        iter != faceToEdge.end();
-        ++iter
-    )
     {
-        label faceI = iter.key();
+        const label faceI = iter.key();
-
         const labelledTri& f = surf.localFaces()[faceI];
 
         forAll(f, fp)

applications/utilities/thermophysical/equilibriumCO/equilibriumCO.C

@@ -51,7 +51,6 @@ int main(int argc, char *argv[])
 {
 
 #   include "setRootCase.H"
-
 #   include "createTime.H"
 
     Info<< nl << "Reading Burcat data IOdictionary" << endl;
@@ -119,17 +118,11 @@ int main(int argc, char *argv[])
     );
 
 
-    for
+    forAllConstIter(SLPtrList<thermo>, EQreactions, iter)
-    (
-        SLPtrList<thermo>::iterator EQreactionsIter = EQreactions.begin();
-        EQreactionsIter != EQreactions.end();
-        ++EQreactionsIter
-    )
     {
-        Info<< "Kc(EQreactions) = " << EQreactionsIter().Kc(T) << endl;
+        Info<< "Kc(EQreactions) = " << iter().Kc(T) << endl;
     }
 
-
     Info<< nl << "end" << endl;
 
     return 0;

bin/foamCopySettings

@@ -37,9 +37,12 @@
 #     to add any custom rsync options.
 #-------------------------------------------------------------------------------
 Script=${0##*/}
-if [ "$1" = "-h" -o "$1" = "-help" -o "$#" -ne 2 ]
+
-then
+#------------------------------------------------------------------------------
+usage() {
+    while [ "$#" -ge 1 ]; do echo "$1" 1>&2; shift; done
     cat <<USAGE 1>&2
+
 Usage: $Script srcDir dstDir
 
     Copy OpenFOAM settings from one case to another, without copying
@@ -52,7 +55,29 @@ Note
 
 USAGE
     exit 1
-fi
+}
+#------------------------------------------------------------------------------
+
+# parse options
+while [ "$#" -gt 0 ]
+do
+    case "$1" in
+    -h | -help)
+        usage
+        ;;
+    -*)
+        usage "unknown option: '$*'"
+        ;;
+    *)
+        break
+        ;;
+    esac
+done
+
+# need rsync
+type rsync >/dev/null 2>&1 || usage "Error: 'rsync' seems to be missing"
+
+[ "$#" -eq 2 ] || usage "Error: incorrect number of arguments"
 
 srcDir=${1%/}
 dstDir=${2%/}

bin/foamEndJob

@@ -35,8 +35,94 @@
 #       to restore controlDict
 #
 #-------------------------------------------------------------------------------
+Script=${0##*/}
 
-PROGNAME=`basename $0`
+usage() {
+    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
+    cat<<USAGE
+Usage: $Script [OPTION] <pid>
+Usage: $Script [OPTION] -c
+
+options:
+  -clear            use blockMesh reader  (uses .blockMesh extension)
+  -case <dir>       specify alternative case directory, default is the cwd
+  -now              stop at next time step
+  -help             print the usage
+
+Tries to end running OpenFOAM application at next write (or optionally
+at the next time step). It needs runTimeModifiable switched on in the
+controlDict. It changes stopAt in the controlDict and waits for the
+job to finish. Restores original controlDict if
+
+    - job has finished
+    - controlDict gets modified (by user)
+    - $Script gets killed.
+
+The -clear option clears any outstanding $Script for the case.
+
+USAGE
+    exit 1
+}
+
+unset clearOpt stopOpt
+
+# parse options
+while [ "$#" -gt 0 ]
+do
+    case "$1" in
+    -h | -help)
+        usage
+        ;;
+    -case)
+        [ "$#" -ge 2 ] || usage "'$1' option requires an argument"
+        cd "$2" 2>/dev/null || usage "directory does not exist:  '$2'"
+        shift 2
+        ;;
+    -c | -clear)
+        clearOpt=true
+        shift
+        ;;
+    -n | -now)
+        stopOpt=now
+        shift
+        ;;
+    -*)
+        usage "unknown option: '$*'"
+        ;;
+    *)
+        break
+        ;;
+    esac
+done
+
+
+# parent directory for normal or parallel
+case "$PWD" in
+    processor*) caseDir=".." ;;
+    *)          caseDir="."  ;;
+esac
+
+# check that case directory is writeable
+[ -w $caseDir ] || {
+    echo "$Script : $caseDir is not writeable"
+    exit 1
+}
+
+# check that controlDict is writeable
+controlDict=$caseDir/system/controlDict
+[ -w $controlDict ] || {
+    echo "$Script : $controlDict is not writeable"
+    exit 1
+}
+
+# need a pid unless with the -clear option
+if [ "$clearOpt" = true ]
+then
+    [ $# -eq 0 ] || usage
+else
+    [ $# -eq 1 ] || usage
+    PID=$1
+fi
 
 
 #-------------------------------------------------------------------------------
@@ -84,6 +170,7 @@ setRawEntry() {
     oldLine=`echo "$oldNumLine" | sed -e 's/^[^:]*://'`
     oldKey=`getKey "$oldLine"`
     oldVal=`getRawEntry $1 "$2"`
+
     if [ ! "$oldKey" -o ! "$oldVal" -o ! "$oldLine" ]
     then
         echo "setRawStringEntry: entry $2 not found in $1"
@@ -92,6 +179,7 @@ setRawEntry() {
         echo "oldLine=$oldLine"
         exit 1
     fi
+
     #echo "oldKey=$oldKey"
     #echo "lineNo=$lineNo"
     #echo "oldLine=$oldLine"
@@ -108,76 +196,30 @@ getBoolEntry()
 {
     val=`getEntry $1 $2`
     case "$val" in
-      'yes')
+    y | yes | true | on | 1)
         return 0
         ;;
-      'no')
+    n | no | false | off | 0)
-        return 123
-        ;;
-      'true')
-        return 0
-        ;;
-      'false')
-        return 123
-        ;;
-      1)
-        return 0
-        ;;
-      0)
         return 123
         ;;
     *)
-        echo "$PROGNAME : getBoolEntry : Illegal boolean value $val in dictionary $1"
+        echo "$Script : getBoolEntry : Illegal boolean value $val in dictionary $1"
         exit 1
         ;;
     esac
 }
 
-# newerFile file1 file2
-# ... could also use   if [ $file1 -nt $file2 ] ...
-newerFile()
-{
-    latest=`ls -1 -t $1 $2 2> /dev/null | head -1`
-    if [ "$latest" = $1 ]
-    then
-        return 0
-    else
-        return 1
-    fi
-}
-
 # processExists pid
 # Returns true if pid exists.
 processExists() {
-    ps -u $LOGNAME -o 'pid' | fgrep $1 >/dev/null
+    ps -u $LOGNAME -o pid | fgrep $1 >/dev/null
 }
 
-usage() {
-cat << USAGE
-Usage: $PROGNAME [-n] <root> <case> <pid>
-          or
-       $PROGNAME -c <root> <case>
-
-Tries to end running Foam application at next write or at next time
-step (-n (at your option). It needs runTimeModifiable switched on in the
-controlDict. It changes stopAt in the controlDict and waits for the job to
-finish. Restores original controlDict if
-    - job has finished
-    - controlDict gets modified (by user)
-    - $PROGNAME gets killed.
-
-The -c option clears any outstanding $PROGNAME for the case.
-
-USAGE
-    exit 1
-}
-
-
 # Restore controlDict and clean up
 restoreDict() {
-    trap 2 3 15
+    trap QUIT TERM INT
 
-    echo "$PROGNAME : Restoring controlDict from controlDict_bak."
+    echo "$Script : Restoring controlDict from controlDict_bak"
     if [ -r ${controlDict}_bak ]
     then
         cp ${controlDict}_bak $controlDict
@@ -185,7 +227,7 @@ restoreDict() {
 
     rm -f $pidFile
 
-    echo "$PROGNAME : Exiting."
+    echo "$Script : Exiting"
     exit 0
 }
 
@@ -196,105 +238,51 @@ restoreDict() {
 #
 #-------------------------------------------------------------------------------
 
-ARCH=`uname -s`
-
 #-- Force standards behaving ps
 #   Get info on all $USER processes
-case $ARCH in
+case `uname -s` in
 HP-UX*)
-    UNIX95=a; export UNIX95
+    UNIX95=a
+    export UNIX95
     ;;
 IRIX*)
-    _XPG=1; export _XPG
+    _XPG=1
+    export _XPG
     ;;
 esac
 
 
-#
+# Pid actually running
-# Initial checks
+if [ "$clearOpt" != true ]
-#
-if [ $# -lt 3 ]
-then
-    usage
-fi
-
-STOPNOW=''
-if [ $1 = '-n' ]
-then
-    STOPNOW='yes'
-    shift
-fi
-CLEAR=''
-if [ $1 = '-c' ]
-then
-    CLEAR='yes'
-    shift
-    if [ $# -ne 2 ]
-    then
-        usage
-    fi
-    ROOT=$1
-    CASE=$2
-else
-    if [ $# -ne 3 ]
-    then
-        usage
-    fi
-    ROOT=$1
-    CASE=$2
-    PID=$3
-fi
-CASE=`echo $CASE | sed -e 's!/.*!!'`       # strip of processorXXX ending
-
-#- Pid actually running
-if [ ! "$CLEAR" ]
 then
     processExists $PID
     if [ $? -ne 0 ]
     then
-        echo "$PROGNAME : process $PID not running."
+        echo "$Script : process $PID not running"
         exit 1
     fi
 fi
 
-#- case directory writeable
-if [ ! -w $ROOT/$CASE ]
-then
-    echo "$PROGNAME : $ROOT/$CASE is not writeable."
-    exit 1
-fi
-
-#- Controldict writeable
-controlDict=$ROOT/$CASE/system/controlDict
-if [ ! -w  $controlDict ]
-then
-    echo "$PROGNAME : $controlDict is not writeable."
-    exit 1
-fi
-
 #- runTimeModifiable
-getBoolEntry $controlDict 'runTimeModifiable'
+getBoolEntry $controlDict runTimeModifiable || {
-if [ $? -ne 0 ]
+    echo "$Script : runTimeModifiable not true in dictionary $controlDict"
-then
-    echo "$PROGNAME : runTimeModifiable not true in dictionary $controlDict."
     exit 1
-fi
+}
 
 #
 #- Check if another foamEndJob running
 #
-if [ "$CLEAR" ]
+if [ "$clear" = true ]
 then
-    pidFiles=`ls $ROOT/$CASE/.foamEndJob* 2>/dev/null`
+    pidFiles=`ls $caseDir/.foamEndJob* 2>/dev/null`
     for pidFile in $pidFiles
     do
         pid=`cat $pidFile`
         if [ "$pid" ]
         then
-            echo "$PROGNAME : found $PROGNAME (pid $pid) for Foam process"
+            echo "$Script : found $Script (pid $pid) for OpenFOAM process"
-            echo "  root: $ROOT"
+            echo "  case: $PWD/$caseDir"
-            echo "  case: $CASE"
+            echo "$Script : Killing $Script (pid $pid)"
-            echo "$PROGNAME : Killing $PROGNAME (pid $pid)."
             kill $pid
             rm -f $pidFile
         fi
@@ -302,7 +290,7 @@ then
     exit 0
 fi
 
-pidFile=$ROOT/$CASE/.foamEndJob${PID}
+pidFile=$caseDir/.foamEndJob$PID
 if [ -f $pidFile ]
 then
     pid=`cat $pidFile`
@@ -311,12 +299,11 @@ then
         processExists $pid
         if [ $? -eq 0 ]
         then
-            echo "$PROGNAME : found running $PROGNAME (pid $pid) for Foam process"
+            echo "$Script : found running $Script (pid $pid) for OpenFOAM process"
-            echo "  root: $ROOT"
+            echo "  case: $PWD/$caseDir"
-            echo "  case: $CASE"
             echo "  pid : $PID"
             echo "  lock: $pidFile"
-            echo "Remove the lock if this is not the case."
+            echo "Remove the lock if this is not the case"
             exit 1
         fi
     fi
@@ -331,63 +318,60 @@ echo $$ > $pidFile
 
 
 #- startTime
-startTime=`getEntry $controlDict 'startTime'`
+startTime=`getEntry $controlDict startTime`
-if [ ! "$startTime" ]
+[ "$startTime" ] || {
-then
+    echo "$Script : startTime not set in dictionary $controlDict"
-    echo "$PROGNAME : startTime not set in dictionary $controlDict."
     exit 1
-fi
+}
 
 #- Write interval
-writeInterval=`getEntry $controlDict 'writeInterval'`
+writeInterval=`getEntry $controlDict writeInterval`
-if [ ! "$writeInterval" ]
+[ "$writeInterval" ] || {
-then
+    echo "$Script : writeInterval not set in dictionary $controlDict"
-    echo "$PROGNAME : writeInterval not set in dictionary $controlDict."
     exit 1
-fi
+}
 
 #- stopAt
-stopAt=`getEntry $controlDict 'stopAt'`
+stopAt=`getEntry $controlDict stopAt`
-if [ ! "$stopAt" ]
+[ "$stopAt" ] || {
-then
+    echo "$Script : stopAt not set in dictionary $controlDict"
-    echo "$PROGNAME : stopAt not set in dictionary $controlDict."
     exit 1
-fi
+}
 
 #- endTime
-endTime=`getEntry $controlDict 'endTime'`
+endTime=`getEntry $controlDict endTime`
-if [ ! "$endTime" ]
+[ "$endTime" ] || {
-then
+    echo "$Script : endTime not set in dictionary $controlDict"
-    echo "$PROGNAME : endTime not set in dictionary $controlDict."
     exit 1
-fi
+}
 
 
-echo "$PROGNAME : Read from controlDict:"
+echo "$Script : Read from controlDict:"
 echo "  controlDict   : $controlDict"
 echo "  writeInterval : $writeInterval"
 #echo "  startTime     : $startTime"
 echo "  stopAt        : $stopAt"
 #echo "  endTime       : $endTime"
 
-echo "$PROGNAME : Making backup of controlDict to controlDict_bak"
+echo "$Script : Making backup of controlDict to controlDict_bak"
 cp $controlDict ${controlDict}_bak
+
 #- Set up handler to restore controlDict
-trap restoreDict 2 3 15
+trap restoreDict QUIT TERM INT
 
-if [ "$STOPNOW" ]
+if [ "$stopOpt" = now ]
 then
-    setRawEntry  $controlDict 'stopAt' 'nextWrite'
+    setRawEntry  $controlDict stopAt nextWrite
-    setRawEntry  $controlDict 'writeInterval' '1'
+    setRawEntry  $controlDict writeInterval 1
 
-    echo "$PROGNAME : Changed in controlDict:"
+    echo "$Script : Changed in controlDict:"
-    echo "    `getLine $controlDict 'stopAt'`"
+    echo "    `getLine $controlDict stopAt`"
-    echo "    `getLine $controlDict 'writeInterval'`"
+    echo "    `getLine $controlDict writeInterval`"
 else
-    setRawEntry $controlDict 'stopAt' 'nextWrite'
+    setRawEntry $controlDict stopAt nextWrite
 
-    echo "$PROGNAME : Changed in controlDict:"
+    echo "$Script : Changed in controlDict:"
-    echo "    `getLine $controlDict 'stopAt'`"
+    echo "    `getLine $controlDict stopAt`"
 fi
 
 
@@ -401,23 +385,24 @@ sleep 5
 touch ${controlDict}_bak
 
 #- Loop a while to give NFS time to update
-if newerFile ${controlDict} ${controlDict}_bak; then
+if [ ${controlDict} -nt ${controlDict}_bak ]
-    echo "$PROGNAME : controlDict newer than controlDict_bak."
+then
-    echo "$PROGNAME : Waiting for file dates to get updated."
+    echo "$Script : controlDict newer than controlDict_bak"
+    echo "$Script : Waiting for file dates to get updated"
 
     iter=0
-    while newerFile ${controlDict} ${controlDict}_bak
+    while [ ${controlDict} -nt ${controlDict}_bak ]
     do
         if [ $iter -ge 120 ]
         then
             #- 120*5 sec = 10 mins passed. Give up
-            echo "$PROGNAME : File date not yet ok after 10 mins. Giving up."
+            echo "$Script : File date not yet ok after 10 mins ... giving up"
             break
         fi
         #- Give _bak a later time
         touch ${controlDict}_bak
 
-        #- Give nfs some time to update time on controlDict.
+        #- Give NFS a chance to update time on controlDict.
         sleep 5
 
         iter=`expr $iter + 1`
@@ -430,21 +415,20 @@ fi
 #  - controlDict modified. No restore.
 #  - controlDict_bak removed. No restore.
 
-echo "$PROGNAME : Waiting for Foam job $PID to finish ..."
+echo "$Script : Waiting for OpenFOAM job $PID to finish ..."
 
 while true
 do
     sleep 5
 
-    if [ ! -r ${controlDict}_bak ]
+    [ -r ${controlDict}_bak ] || {
-    then
+        echo "$Script : ${controlDict}_bak disappeared. Exiting without restore"
-        echo "$PROGNAME : ${controlDict}_bak dissappeared. Exiting without restore."
         exit 1
-    fi
+    }
 
-    if newerFile ${controlDict} ${controlDict}_bak
+    if [ ${controlDict} -nt ${controlDict}_bak ]
     then
-        echo "$PROGNAME : ${controlDict} modified externally. Exiting without restore."
+        echo "$Script : ${controlDict} modified externally. Exiting without restore"
         exit 0
     fi
 
@@ -454,7 +438,7 @@ do
         #- Job finished
         break
     fi
-    # echo "Foam job $PID still running ..."
+    # echo "OpenFOAM job $PID still running ..."
 done
 
 #- Dictionary restore

bin/foamLog

@@ -31,35 +31,36 @@
 # Bugs
 #     -solution singularity not handled
 #------------------------------------------------------------------------------
+Script=${0##*/}
+toolsDir=${0%/*}/tools
 
-PROGDIR=`dirname $0`
+usage() {
-PROGNAME=`basename $0`
+    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
-DBFILE=${PROGNAME}.db
-
-printUsage() {
     cat <<USAGE
-$PROGNAME - extracts xy files from OpenFOAM logs.
 
-Usage: $PROGNAME [-n][-s] <log>
+Usage: $Script [OPTIONS] <log>
-           extracts xy files from log
+  -list             lists but does not extract
-       $PROGNAME -l <log>
+  -n                create single column files with the extracted data only
-           lists but does not extract
+  -quiet            quiet operation
-       $PROGNAME -h
+  -help             print the usage
-           for a help message
+
+$Script - extracts xy files from OpenFOAM logs.
 
 USAGE
+    exit 1
 }
 
+#------------------------------------------------------------------------------
 
 printHelp() {
-printUsage
+cat <<HELP
-cat <<LABHELP
+-----------------------------------------------------------------------------
 The default is to extract for all the 'Solved for' variables the initial
 residual, the final residual and the number of iterations. Additionally, a
 (user editable) database is used to extract data for standard non-solved for
 variables like Courant number, and execution time.
 
-$PROGNAME -l lists all the possible variables without extracting them.
+$Script -l lists all the possible variables without extracting them.
 
 The program will generate and run an awk script which writes a set of files,
 logs/<var>_<subIter>, for every <var> specified, for every occurrence inside
@@ -79,7 +80,7 @@ separated with '/' :
   Column 2 is the extended regular expression (egrep) to select the line.
   Column 3 is the string (fgrep) to select the column inside the line.
 The value taken will be the first (non-space)word after this column.
-The database ($PROGNAME.db) will taken from these locations:
+The database ($Script.db) will taken from these locations:
 
     .
     $HOME/.OpenFOAM/$WM_PROJECT_VERSION
@@ -87,61 +88,97 @@ The database ($PROGNAME.db) will taken from these locations:
     $WM_PROJECT_INST_DIR/site/$WM_PROJECT_VERSION
     $WM_PROJECT_INST_DIR/site
     $WM_PROJECT_DIR/etc
-    $PROGDIR/tools
+    $toolsDir
 
-Option -s suppresses the default information and only prints the extracted
+Option -q suppresses the default information and only prints the extracted
 variables.
+-----------------------------------------------------------------------------
+HELP
 
-LABHELP
+usage
 }
 
 
-# The various places to be searched:
+timeName=Time
-for i in \
+unset listOpt quietOpt
-    . \
+
-    $HOME/.OpenFOAM/$WM_PROJECT_VERSION \
+# parse options
-    $HOME/.OpenFOAM \
+while [ "$#" -gt 0 ]
-    $WM_PROJECT_INST_DIR/site/$WM_PROJECT_VERSION \
-    $WM_PROJECT_INST_DIR/site \
-    $WM_PROJECT_DIR/etc \
-    $PROGDIR/tools \
-    ;
 do
-    if [ -r $i/$DBFILE ]
+    case "$1" in
-    then
+    -h | -help)
-        DBFILE="$i/$DBFILE"
+        printHelp
+        exit 0
+        ;;
+    -n)
+        unset timeName
+        shift
+        ;;
+    -l | -list)
+        listOpt=true
+        shift
+        ;;
+    -q | -quiet | -s | -silent)
+        quietOpt=true
+        shift
+        ;;
+    -*)
+        usage "unknown option: '$*'"
+        ;;
+    *)
         break
-    fi
+        ;;
+    esac
 done
 
+# find the database file
+DBFILE=$Script.db
+[ -f $DBFILE ] || DBFILE=`foamEtcFile $Script.db` || DBFILE=$toolsDir/$Script.db
 
-myEcho() {
+# need the database file
-  if [ "$VERBOSE" ]
+[ -f $DBFILE ] || {
-  then
+    echo "$Script: Cannot read database $DBFILE"
-      echo "$*"
+    exit 1
-  fi
 }
 
+# single logFile
+if [ $# -eq 1 ]
+then
+    LOG=$1
+    [ -r "$LOG" ] && [ -f "$LOG" ] || usage "Cannot read log $LOG"
+else
+    usage
+fi
+
+
+myEcho()
+{
+   [ "$quietOpt" = true ] || echo "$*"
+}
+
+
 # getSolvedVars logFile
 # Prints names of all 'solved for' variables in the log file.
-getSolvedVars() {
+getSolvedVars()
+{
     fgrep ' Solving for ' $1 | fgrep ',' | sed -e 's/.* Solving for \([^,]*\)[,:].*/\1/' | sort -u
 }
 
 
 # getQueries dbFile queryName
 # Gets regular expressions for a certain queryName from the database
-getQueries() {
+getQueries()
-    if [ ! -f "$1" ]
+{
-    then
+    dbFile=$1
-        echo "Cannot find dbFile $1"
-        exit 1
-    fi
-
     queryName=$2
 
-    LINEQ=`grep -v '^#' $1 | awk -F '/' "/$queryName/ {if (\"$queryName\" "'!= $1) next; print $2}'`
+    [ -f "$dbFile" ] || {
-    NUMQ=`grep -v '^#' $1 | awk -F '/' "/$queryName/ {if (\"$queryName\" "'!= $1) next; print $3}'`
+        echo "Cannot find dbFile $dbFile"
+        exit 1
+    }
+
+    LINEQ=`grep -v '^#' $dbFile | awk -F '/' "/$queryName/ {if (\"$queryName\" "'!= $1) next; print $2}'`
+    NUMQ=`grep -v '^#' $dbFile | awk -F '/' "/$queryName/ {if (\"$queryName\" "'!= $1) next; print $3}'`
 
     #echo "For $queryName found line selection /$LINEQ/ , column selection /$NUMQ/" 1>&2
     #if [ ! "$LINEQ" -o ! "$NUMQ" ]
@@ -153,14 +190,16 @@ getQueries() {
 
 # getDbQueryList dbFile
 # Echoes list of possible queries
-getDbQueryList() {
+getDbQueryList()
+{
     grep -v '^#' $1 | grep '[^ \t]' | awk -F '/' '{print $1}'
 }
 
 
 # getSolveQueryList logFile
 # Echoes list of queries from "solved for" variables in log file
-getSolveQueryList() {
+getSolveQueryList()
+{
     solvedVars=`getSolvedVars $1`
 
     for var in $solvedVars
@@ -174,7 +213,8 @@ getSolveQueryList() {
 
 # getAllQueries dbFile logFile
 # Gets all queries from database and from logfile
-getAllQueries() {
+getAllQueries()
+{
     #-- All solved for queries from log file
     queries=`getSolveQueryList $2`
 
@@ -208,107 +248,33 @@ getAllQueries() {
 # Main
 #-----------------------------
 
-# sort arguments
+if [ "$listOpt" = true ]
-TIMENAME='Time'
-VERBOSE='yes'
-LISTONLY=''
-
-while getopts nslh flags
-do
-    case $flags in
-    n)
-        TIMENAME=""
-        ;;
-    h)
-        printHelp
-        exit 0
-        ;;
-    s)
-        VERBOSE=""
-        ;;
-    l)
-        LISTONLY='yes'
-        ;;
-    \?)
-        printUsage
-        exit 1
-        ;;
-    esac
-done
-
-
-# Shift options
-shift `expr $OPTIND - 1`
-
-if [ ! -f $DBFILE ]
 then
-    echo "$PROGNAME: Cannot read database $DBFILE"
-    exit 1
-fi
-
-if [ "$LISTONLY" ]
-then
-    if [ $# -ne 1 ]
-    then
-        printUsage
-        exit 1
-    fi
-    LOG=$1;
-    if [ ! -r $LOG ]
-    then
-        echo "$PROGNAME: Cannot read log $LOG"
-        exit 1
-    fi
     getAllQueries $DBFILE $LOG
     exit 0
 fi
 
-if [ $# -ne 1 ]
+caseDir=.
-then
+outputDir=$caseDir/logs
-    printUsage
-    exit 1
-fi
 
-CASEDIR=.
+[ -d "$caseDir" ] || {
-LOG=$1
+    echo "$Script: Cannot read $caseDir"
-if [ ! -r $LOG ]
-then
-    echo "$PROGNAME: Cannot read log $LOG"
     exit 1
-fi
+}
 
 QUERYNAMES=`getAllQueries $DBFILE $LOG`
 
-
+#
-if [ ! "$CASEDIR" ]
+# Make logs dir in case directory and place awk file there
-then
+#
-    printUsage
+mkdir -p $outputDir
-    exit 1
+AWKFILE=$outputDir/$Script.awk
-fi
-
-if [ ! -d "$CASEDIR" ]
-then
-    echo "$PROGNAME: Cannot read $CASEDIR"
-    exit 1
-fi
-
-if [ ! -f "$LOG" ]
-then
-    echo "$PROGNAME: Cannot read log file $LOG"
-    exit 1
-fi
-
-
-#-- Make logs dir in case directory and put awk file there.
-
-mkdir -p $CASEDIR/logs
-AWKFILE=$CASEDIR/logs/$PROGNAME.awk
 
 myEcho "Using:"
 myEcho "  log      : $LOG"
 myEcho "  database : $DBFILE"
 myEcho "  awk file : $AWKFILE"
-myEcho "  files to : $CASEDIR/logs"
+myEcho "  files to : $outputDir"
 myEcho ""
 
 
@@ -316,22 +282,25 @@ myEcho ""
 # Generate Awk program
 #-----------------------------
 
-#-- header
+rm -f $AWKFILE 2> /dev/null
+cat << AWK_CONTENTS > $AWKFILE
+# header
+BEGIN {
+    Iteration=0
+    resetCounters()
+}
 
-rm -f $AWKFILE; touch $AWKFILE
+# reset counters used for variable postfix
-echo "BEGIN {" >> $AWKFILE
+function resetCounters() {
-echo "    Iteration=0" >> $AWKFILE
+AWK_CONTENTS
-echo "    resetCounters()" >> $AWKFILE
+# ----------
-echo "}" >> $AWKFILE
 
-echo "" >> $AWKFILE
-echo "# reset counters used for variable postfix" >> $AWKFILE
-echo "function resetCounters() {" >> $AWKFILE
 for queryName in $QUERYNAMES
 do
     varName=${queryName}Cnt
     echo "    ${varName}=0" >> $AWKFILE
 done
+
 echo "    # Reset counters for general Solving for extraction" >> $AWKFILE
 echo "    for (varName in subIter)" >> $AWKFILE
 echo "    {" >> $AWKFILE
@@ -341,10 +310,9 @@ echo "}" >> $AWKFILE
 echo "" >> $AWKFILE
 
 
-cat <<LABEL >> $AWKFILE
+cat << AWK_CONTENTS >> $AWKFILE
 # Extract value after columnSel
-function extract(inLine,columnSel,outVar,
+function extract(inLine,columnSel,outVar,a,b)
-                 a,b)
 {
     a=index(inLine, columnSel)
     b=length(columnSel)
@@ -352,71 +320,82 @@ function extract(inLine,columnSel,outVar,
     gsub("[,:]","",outVar[1])
 }
 
-LABEL
+AWK_CONTENTS
+# ----------
 
-
+#
-#-- Generate code for iteration separator (increments 'Iteration')
+# Code for iteration separator (increments 'Iteration')
+#
 getQueries $DBFILE 'Separator'
-cat <<LABSEP >> $AWKFILE
+cat << AWK_CONTENTS >> $AWKFILE
-#-- Iteration separator (increments 'Iteration')
+# Iteration separator (increments 'Iteration')
 /$LINEQ/ {
     Iteration++
     resetCounters()
 }
 
-LABSEP
+AWK_CONTENTS
+# ----------
 
-
+#
-#-- Generate code for extracting Time
+# Code for extracting Time
+#
 getQueries $DBFILE 'Time'
-cat <<LABTIME >> $AWKFILE
+cat << AWK_CONTENTS >> $AWKFILE
-#-- Time extraction (sets 'Time')
+# Time extraction (sets 'Time')
 /$LINEQ/ {
     extract(\$0, "$NUMQ", val)
     Time=val[1]
 }
 
-LABTIME
+AWK_CONTENTS
+# ----------
 
-
+#
-#-- Generate code for singularity handling.
+# Code for singularity handling.
-cat <<LABSING >> $AWKFILE
+#
-#-- Skip whole line with singularity variable
+cat << AWK_CONTENTS >> $AWKFILE
+# Skip whole line with singularity variable
 /solution singularity/ {
     next;
 }
-LABSING
 
+AWK_CONTENTS
+# ----------
 
-#-- Generate code for extracting solved for quantities
+#
-cat <<LABSOLVE >> $AWKFILE
+# Code for extracting solved for quantities
-#-- Extraction of any solved for variable
+#
+cat << AWK_CONTENTS >> $AWKFILE
+# Extraction of any solved for variable
 /Solving for/ {
     extract(\$0, "Solving for ", varNameVal)
 
     varName=varNameVal[1]
     file=varName "_" subIter[varName]++
-    file="$CASEDIR/logs/" file
+    file="$outputDir/" file
     extract(\$0, "Initial residual = ", val)
-    print $TIMENAME "\t" val[1] > file
+    print $timeName "\t" val[1] > file
 
     varName=varNameVal[1] "FinalRes"
     file=varName "_" subIter[varName]++
-    file="$CASEDIR/logs/" file
+    file="$outputDir/" file
     extract(\$0, "Final residual = ", val)
-    print $TIMENAME "\t" val[1] > file
+    print $timeName "\t" val[1] > file
 
     varName=varNameVal[1] "Iters"
     file=varName "_" subIter[varName]++
-    file="$CASEDIR/logs/" file
+    file="$outputDir/" file
     extract(\$0, "No Iterations ", val)
-    print $TIMENAME "\t" val[1] > file
+    print $timeName "\t" val[1] > file
 }
 
-LABSOLVE
+AWK_CONTENTS
+# ----------
 
-
+#
-#-- generate code to process queries
+# Code to process queries
+#
 for queryName in $QUERYNAMES
 do
     getQueries $DBFILE $queryName
@@ -424,11 +403,11 @@ do
     then
         counter=${queryName}Cnt
 
-        echo "#-- Extraction of $queryName" >> $AWKFILE
+        echo "# Extraction of $queryName" >> $AWKFILE
         echo "/$LINEQ/ {" >> $AWKFILE
         echo "    extract(\$0, \"$NUMQ\", val)" >> $AWKFILE
-        echo "    file=\"$CASEDIR/logs/${queryName}_\" ${counter}" >> $AWKFILE
+        echo "    file=\"$outputDir/${queryName}_\" ${counter}" >> $AWKFILE
-        echo "    print $TIMENAME \"\\t\" val[1] > file" >> $AWKFILE
+        echo "    print $timeName \"\\t\" val[1] > file" >> $AWKFILE
         echo "    ${counter}++" >> $AWKFILE
         echo "}" >> $AWKFILE
         echo "" >> $AWKFILE

bin/foamNewCase

@@ -55,7 +55,6 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-
 unset appName caseName listOpt
 
 # parse options
@@ -84,12 +83,19 @@ do
         version="$2"
         shift 2
         ;;
+    -*)
+        usage "unknown option: '$*'"
+        ;;
     *)
-        usage "unknown option/argument: '$*'"
+        usage "unexpected argument: '$*'"
         ;;
     esac
 done
 
+# need rsync, except for when listing
+type rsync >/dev/null 2>&1 || [ "$listOpt" = true ] || usage "Error: 'rsync' seems to be missing"
+
+
 #------------------------------------------------------------------------------
 
 [ -n "$version" ] || {

bin/foamUpdateCaseFileHeader

@@ -32,41 +32,70 @@
 #     Also removes consecutive blank lines from file.
 #
 #------------------------------------------------------------------------------
-foamVersion=$WM_PROJECT_VERSION
-
 usage() {
+    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
     cat<<USAGE
 
 Usage: ${0##*/} [OPTION] <file1> ... <fileN>
 
 options:
-  -v VER  specifies the version to be written in the header
+  -version <ver>    specifies the version to be written in the header
-  -h      help
+  -help             print the usage
 
   Updates the header of application files and removes consecutive blank lines.
   By default, writes current OpenFOAM version in the header.
-  An alternative version can be specified with the -v option.
+  An alternative version can be specified with the -version option.
 
 USAGE
     exit 1
 }
 
+#------------------------------------------------------------------------------
 
-printHeader() {
+# parse options
+while [ "$#" -gt 0 ]
+do
+    case "$1" in
+    -h | -help)
+        usage
+        ;;
+    -v | -version)
+        [ "$#" -ge 2 ] || usage "'$1' option requires an argument"
+        version="$2"
+        shift 2
+        ;;
+    -*)
+        usage "unknown option: '$*'"
+        ;;
+    *)
+        break
+        ;;
+    esac
+done
+
+# constant width for version - default to WM_PROJECT_VERSION
+version=$(printf %-36s ${version:-$WM_PROJECT_VERSION})
+
+[ $# -ge 1 ] || usage
+
+#------------------------------------------------------------------------------
+
+printHeader()
+{
     cat<<HEADER
 /*--------------------------------*- C++ -*----------------------------------*\\
 | =========                 |                                                 |
 | \\\\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\\\    /   O peration     | Version:  ${foamVersion}  |
+|  \\\\    /   O peration     | Version:  $version  |
 |   \\\\  /    A nd           | Web:      www.OpenFOAM.org                      |
 |    \\\\/     M anipulation  |                                                 |
 \\*---------------------------------------------------------------------------*/
 FoamFile
 {
     version     2.0;
-    format      ${1};
+    format      $1;
-    class       ${2};
+    class       $2;
-    object      ${3};
+    object      $3;
 }
 HEADER
 }
@@ -75,68 +104,40 @@ HEADER
 #
 # extract attribute '$1' from file '$2'
 #
-FoamFileAttribute() {
+FoamFileAttribute()
+{
     sed -n -e 's/[ ;]*$//' -e "s/^ *$1 *//p" $2
 }
 
 
 #
-# OPTIONS
+# main
 #
-opts=$(getopt hv: $*)
-if [ $? -ne 0 ]
-then
-    echo "Aborting due to invalid option"
-    usage
-fi
-eval set -- '$opts'
-while [ "$1" != "--" ]
-do
-    case $1 in
-    -v)
-        foamVersion=$2
-        shift
-        ;;
-    -h)
-        usage
-        ;;
-    esac
-    shift
-done
-shift
-
-[ $# -ge 1 ] || usage
-
-
-# constant width for version
-foamVersion=$(printf %-36s $foamVersion)
-
-#
-# MAIN
-#
-unset NOTE
 
+tmpFile=FoamFile.tmp$$
 for caseFile
 do
     if grep FoamFile $caseFile >/dev/null 2>&1
     then
         echo "Updating case file: $caseFile"
-        sed -n '/FoamFile/,/}/p' $caseFile > FoamFile.tmp
+        sed -n '/FoamFile/,/}/p' $caseFile > $tmpFile
 
-        FORMAT=$(FoamFileAttribute format FoamFile.tmp)
+        format=$(FoamFileAttribute format $tmpFile)
-        CLASS=$(FoamFileAttribute  class  FoamFile.tmp)
+        class=$(FoamFileAttribute  class  $tmpFile)
-        OBJECT=$(FoamFileAttribute object FoamFile.tmp)
+        object=$(FoamFileAttribute object $tmpFile)
-        # extract NOTE?
+        # extract note? - needs special handling
+        unset note
 
-        printHeader $FORMAT $CLASS $OBJECT $NOTE > FoamFile.tmp
+        printHeader $format $class $object "$note" > $tmpFile
-        sed '1,/}/d' $caseFile | sed '/./,/^$/!d' >> FoamFile.tmp
+
+        sed '1,/}/d' $caseFile | sed '/./,/^$/!d' >> $tmpFile
 
         # use cat to avoid removing/replace soft-links
-        [ -s FoamFile.tmp ] && cat FoamFile.tmp >| $caseFile
+        [ -s $tmpFile ] && cat $tmpFile >| $caseFile
-        rm -f FoamFile.tmp 2>/dev/null
+        rm -f $tmpFile 2>/dev/null
     else
         echo " Invalid case file: $caseFile" 1>&2
     fi
 done
 
-#------------------------------------------------------------------------------
+#------------------------------------------------------------------ end-of-file

doc/codingStyleGuide.org

@@ -2,7 +2,7 @@
 #
 #+TITLE:                 OpenFOAM C++ style guide
 #+AUTHOR:                      OpenCFD Ltd.
-#+DATE:                       November 2009
+#+DATE:                         April 2010
 #+LINK:                  http://www.opencfd.co.uk
 #+OPTIONS: author:nil ^:{}
 
@@ -18,97 +18,116 @@
       made with 'break' or 'continue' as part of a control structure.
 
     + stream output
-      =<<= is always four characters after the start of the stream,
+      + =<<= is always four characters after the start of the stream,
         so that the =<<= symbols align, i.e.
 
-    :Info<< ...
+#+BEGIN_EXAMPLE
-    :os  << ...
+    Info<< ...
+    os  << ...
+#+END_EXAMPLE
 
       so
 
-    :WarningIn("className::functionName()")
+#+BEGIN_EXAMPLE
-    :    << "Warning message"
+    WarningIn("className::functionName()")
+        << "Warning message"
+#+END_EXAMPLE
 
       NOT
 
-    :WarningIn("className::functionName()")
+#+BEGIN_EXAMPLE
-    :<< "Warning message"
+    WarningIn("className::functionName()")
+    << "Warning message"
+#+END_EXAMPLE
 
 
     + no unnecessary class section headers, i.e. remove
 
-    :// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+#+BEGIN_EXAMPLE
-    :
+    // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
-    :// Check
+
-    :
+    // Check
-    :// Edit
+
-    :
+    // Edit
-    :// Write
+
+    // Write
+#+END_EXAMPLE
+
 
       if they contain nothing, even if planned for 'future use'
 
     + class titles are centred
 
-    :/*---------------------------------------------------------------------------*\
+#+BEGIN_EXAMPLE
-    :                        Class exampleClass Declaration
+    /*---------------------------------------------------------------------------*\
-    :\*---------------------------------------------------------------------------*/
+                            Class exampleClass Declaration
+    \*---------------------------------------------------------------------------*/
+#+END_EXAMPLE
 
       NOT
 
-    :/*---------------------------------------------------------------------------*\
+#+BEGIN_EXAMPLE
-    :               Class exampleClass Declaration
+    /*---------------------------------------------------------------------------*\
-    :\*---------------------------------------------------------------------------*/
+                Class exampleClass Declaration
+    \*---------------------------------------------------------------------------*/
+#+END_EXAMPLE
 
 *** The =.H= Files
     + header file spacing
-      Leave two empty lines between sections (as per functions in the =.C= file etc)
+      + Leave two empty lines between sections
+        (as per functions in the =.C= file etc)
 
     + use "//- Comment" comments in header file
       + add descriptions to class data and functions
     + destructor
-      If adding a comment to the destructor - use //- and code as a normal function:
+      + If adding a comment to the destructor -
+        use //- and code as a normal function:
 
-    ://- Destructor
+#+BEGIN_EXAMPLE
-    :~className();
+    //- Destructor
+    ~className();
+#+END_EXAMPLE
 
     + inline functions
-      Use inline functions where appropriate in a separate classNameI.H file.
+      + Use inline functions where appropriate in a separate classNameI.H file.
         Avoid cluttering the header file with function bodies.
 
 *** The =.C= Files
     + Do not open/close namespaces in a =.C= file
-      Fully scope the function name, i.e.
+      + Fully scope the function name, i.e.
 
-    :Foam::returnType Foam::className::functionName()
+#+BEGIN_EXAMPLE
+    Foam::returnType Foam::className::functionName()
+#+END_EXAMPLE
 
       NOT
 
-    :namespace Foam
+#+BEGIN_EXAMPLE
-    :{
+    namespace Foam
-    :    ...
+    {
-    :
+        ...
-    :    returnType className::functionName()
+        returnType className::functionName()
-    :
+        ...
-    :    ...
+    }
-    :}
+#+END_EXAMPLE
 
       EXCEPTION
 
       When there are multiple levels of namespace, they may be used in the =.C=
       file, i.e.
 
-    :namespace Foam
+#+BEGIN_EXAMPLE
-    :{
+    namespace Foam
-    :namespace compressible
+    {
-    :{
+    namespace compressible
-    :namespace RASModels
+    {
-    :{
+    namespace RASModels
-    :
+    {
-    :    ...
+        ...
-    :
+    } // End namespace RASModels
-    :} // End namespace RASModels
+    } // End namespace compressible
-    :} // End namespace compressible
+    } // End namespace Foam
-    :} // End namespace Foam
+#+END_EXAMPLE
 
     + Use two empty lines between functions
 
@@ -131,64 +150,95 @@
       If a class is virtual - make all derived classes virtual.
 
 *** Conditional Statements
-    :if (condition)
+#+BEGIN_EXAMPLE
-    :{
+    if (condition)
-    :    code;
+    {
-    :}
+        code;
+    }
+#+END_EXAMPLE
 
     OR
 
-    :if
+#+BEGIN_EXAMPLE
-    :(
+    if
-    :   long condition
+    (
-    :)
+       long condition
-    :{
+    )
-    :    code;
+    {
-    :}
+        code;
+    }
+#+END_EXAMPLE
 
     NOT (no space between "if" and "(")
 
-    :if(condition)
+#+BEGIN_EXAMPLE
-    :{
+    if(condition)
-    :    code;
+    {
-    :}
+        code;
+    }
+#+END_EXAMPLE
 
 *** =for= and =while= Loops
-    :for (i = 0; i < maxI; i++)
+
-    :{
+#+BEGIN_EXAMPLE
-    :    code;
+    for (i = 0; i < maxI; i++)
-    :}
+    {
+        code;
+    }
+#+END_EXAMPLE
 
     OR
 
-    :for
+#+BEGIN_EXAMPLE
-    :(
+    for
-    :    i = 0;
+    (
-    :    i < maxI;
+        i = 0;
-    :    i++
+        i < maxI;
-    :)
+        i++
-    :{
+    )
-    :    code;
+    {
-    :}
+        code;
+    }
+#+END_EXAMPLE
 
     NOT (no space between "for" and "(")
 
-    :for(i = 0; i < maxI; i++)
+#+BEGIN_EXAMPLE
-    :{
+    for(i = 0; i < maxI; i++)
-    :    code;
+    {
-    :}
+        code;
+    }
+#+END_EXAMPLE
 
     Note that when indexing through iterators, it is often slightly more
     efficient to use the pre-increment form. Eg, =++iter= instead of =iter++=
 
-*** =forAll= , =forAllIter=, etc. loops
+*** =forAll=, =forAllIter=, =forAllConstIter=, etc. loops
     like =for= loops, but
 
-    :forAll(
+#+BEGIN_EXAMPLE
+    forAll(
+#+END_EXAMPLE
 
     NOT
 
-    :forAll (
+#+BEGIN_EXAMPLE
+    forAll (
+#+END_EXAMPLE
+
+    Using the =forAllIter= and =forAllConstIter= macros is generally
+    advantageous - less typing, easier to find later.  However, since
+    they are macros, they will fail if the iterated object contains
+    any commas.
+
+    The following will FAIL!:
+
+#+BEGIN_EXAMPLE
+    forAllIter(HashTable<labelPair, edge, Hash<edge> >, foo, iter)
+#+END_EXAMPLE
+
+    These convenience macros are also generally avoided in other
+    container classes and OpenFOAM primitive classes.
 
 *** Splitting Over Multiple Lines
 
@@ -198,64 +248,81 @@
      + do not put "const" onto its own line - use a split to keep it with
        the function name and arguments.
 
-     so:
+     so
 
-     :const Foam::longReturnTypeName&
+#+BEGIN_EXAMPLE
-     :Foam::longClassName::longFunctionName const
+     const Foam::longReturnTypeName&
+     Foam::longClassName::longFunctionName const
+#+END_EXAMPLE
 
      NOT
 
-     :const Foam::longReturnTypeName&
+#+BEGIN_EXAMPLE
-     :    Foam::longClassName::longFunctionName const
+     const Foam::longReturnTypeName&
+         Foam::longClassName::longFunctionName const
+#+END_EXAMPLE
 
      NOR
 
-     :const Foam::longReturnTypeName& Foam::longClassName::longFunctionName
+#+BEGIN_EXAMPLE
-     :const
+     const Foam::longReturnTypeName& Foam::longClassName::longFunctionName
+     const
+#+END_EXAMPLE
 
      NOR
 
-     :const Foam::longReturnTypeName& Foam::longClassName::
+#+BEGIN_EXAMPLE
-     :longFunctionName const
+     const Foam::longReturnTypeName& Foam::longClassName::
-
+     longFunctionName const
+#+END_EXAMPLE
 
      + if it needs to be split again, split at the function name (leaving
        behind the preceding scoping "::"s), and again, left align, i.e.
 
      For example,
 
-     :const Foam::longReturnTypeName&
+#+BEGIN_EXAMPLE
-     :Foam::veryveryveryverylongClassName::
+     const Foam::longReturnTypeName&
-     :veryveryveryverylongFunctionName const
+     Foam::veryveryveryverylongClassName::
+     veryveryveryverylongFunctionName const
+#+END_EXAMPLE
 
 **** Splitting long lines at an "="
 
      Indent after split
 
-     :variableName =
+#+BEGIN_EXAMPLE
-     :    longClassName.longFunctionName(longArgument);
+     variableName =
+         longClassName.longFunctionName(longArgument);
+#+END_EXAMPLE
 
      OR (where necessary)
 
-     :variableName =
+#+BEGIN_EXAMPLE
-     :    longClassName.longFunctionName
+     variableName =
-     :    (
+         longClassName.longFunctionName
-     :        longArgument1,
+         (
-     :        longArgument2
+             longArgument1,
-     :    );
+             longArgument2
+         );
+#+END_EXAMPLE
 
      NOT
 
-     :variableName =
+#+BEGIN_EXAMPLE
-     :longClassName.longFunctionName(longArgument);
+     variableName =
+     longClassName.longFunctionName(longArgument);
+#+END_EXAMPLE
 
      NOR
 
-     :variableName = longClassName.longFunctionName
+#+BEGIN_EXAMPLE
-     :(
+     variableName = longClassName.longFunctionName
-     :    longArgument1,
+     (
-     :    longArgument2
+         longArgument1,
-     :);
+         longArgument2
+     );
+#+END_EXAMPLE
 
 *** Maths and Logic
     + operator spacing
@@ -267,34 +334,41 @@
       + a || b, a && b
 
     + splitting formulae over several lines
+
       Split and indent as per "splitting long lines at an "=""
       with the operator on the lower line.  Align operator so that first
       variable, function or bracket on the next line is 4 spaces indented i.e.
 
-    :variableName =
+#+BEGIN_EXAMPLE
-    :    a * (a + b)
+    variableName =
-    :  - exp(c/d)
+        a * (a + b)
-    :  * (k + t);
+      - exp(c/d)
+      * (k + t);
+#+END_EXAMPLE
 
       This is sometime more legible when surrounded by extra parentheses:
 
-    :variableName =
+#+BEGIN_EXAMPLE
-    :(
+    variableName =
-    :    a * (a + b)
+    (
-    :  - exp(c/d)
+        a * (a + b)
-    :  * (k + t)
+      - exp(c/d)
-    :);
+      * (k + t)
+    );
+#+END_EXAMPLE
 
     + splitting logical tests over several lines
 
       outdent the operator so that the next variable to test is aligned with
       the four space indentation, i.e.
 
-    :if
+#+BEGIN_EXAMPLE
-    :(
+    if
-    :    a == true
+    (
-    : && b == c
+        a == true
-    :)
+     && b == c
+    )
+#+END_EXAMPLE
 
 ** Documentation
 
@@ -315,14 +389,16 @@
 
       For example,
 
-    :Class
+#+BEGIN_EXAMPLE
-    :    Foam::myClass
+    Class
-    :
+        Foam::myClass
-    :Description
+
-    :    A class for specifying the documentation style.
+    Description
-    :
+        A class for specifying the documentation style.
-    :    The class is implemented as a set of recommendations that may
+
-    :    sometimes be useful.
+        The class is implemented as a set of recommendations that may
+        sometimes be useful.
+#+END_EXAMPLE
 
     + The class name must be qualified by its namespace, otherwise Doxygen
       will think you are documenting some other class.
@@ -332,11 +408,13 @@
       finding these under-documented classes later.
 
 
-    :Class
+#+BEGIN_EXAMPLE
-    :    Foam::myUnderDocumentedClass
+    Class
-    :
+        Foam::myUnderDocumentedClass
-    :Description
+
-    :    Foam::myUnderDocumentedClass
+    Description
+        Foam::myUnderDocumentedClass
+#+END_EXAMPLE
 
 
     + Use 'Class' and 'Namespace' tags in the header files.
@@ -346,11 +424,13 @@
       The Description block then applies to documenting the file itself.
 
 
-    :InClass
+#+BEGIN_EXAMPLE
-    :    Foam::myClass
+    InClass
-    :
+        Foam::myClass
-    :Description
+
-    :    Implements the read and writing of files.
+    Description
+        Implements the read and writing of files.
+#+END_EXAMPLE
 
 *** Doxygen Special Commands
 
@@ -368,29 +448,31 @@
     Doxygen commmands can be inserted within the block without problems.
 
 
-    :InClass
+#+BEGIN_EXAMPLE
-    :    Foam::myClass
+    InClass
-    :
+        Foam::myClass
-    :Description
+
-    :    Implements the read and writing of files.
+    Description
-    :
+        Implements the read and writing of files.
-    :    An example input file:
+
-    :    @verbatim
+        An example input file:
-    :        patchName
+        @verbatim
-    :        {
+            patchName
-    :            type        myPatchType;
+            {
-    :            refValue    100;
+                type        myPatchType;
-    :            value       uniform 1;
+                refValue    100;
-    :        }
+                value       uniform 1;
-    :    @endverbatim
+            }
-    :
+        @endverbatim
-    :    Within the implementation, a loop over all patches is done:
+
-    :    @code
+        Within the implementation, a loop over all patches is done:
-    :        forAll(patches, patchI)
+        @code
-    :        {
+            forAll(patches, patchI)
-    :            ...  // some operation
+            {
-    :        }
+                ...  // some operation
-    :    @endcode
+            }
+        @endcode
+#+END_EXAMPLE
 
 *** HTML Special Commands
 
@@ -399,28 +481,34 @@
     Doxygen to complain, but seem to work anyhow.
 
     eg,
-    + The template with type <HR> is a bad example.
+    + The template with type =<HR>= is a bad example.
 
-    + The template with type \<HR\> is a better example.
+    + The template with type =\<HR\>= is a better example.
 
-    + The template with type <Type> causes Doxygen to complain about an
+    + The template with type =<Type>= causes Doxygen to complain about an
       unknown html type, but it seems to work okay anyhow.
 
 
 *** Documenting Namespaces
 
-    + If namespaces are explictly declared with the Namespace() macro,
+    + If namespaces are explictly declared with the =Namespace()= macro,
       they should be documented there.
 
     + If the namespaces is used to hold sub-models, the namespace can be
       documented in the same file as the class with the model selector.
       eg,
-    :documented namespace 'Foam::functionEntries' within the
+
-    :class 'Foam::functionEntry'
+#+BEGIN_EXAMPLE
+    documented namespace 'Foam::functionEntries' within the
+    class 'Foam::functionEntry'
+#+END_EXAMPLE
 
     + If nothing else helps, find some sensible header.
       eg,
-    :namespace 'Foam' is documented in the foamVersion.H file
+
+#+BEGIN_EXAMPLE
+    namespace 'Foam' is documented in the foamVersion.H file
+#+END_EXAMPLE
 
 
 *** Documenting Typedefs and classes defined via macros
@@ -459,7 +547,9 @@
     Press.
 
     Eg,
-    :myClass.initialize()
+#+BEGIN_EXAMPLE
+    myClass.initialize()
+#+END_EXAMPLE
 
 
     The word "its" (possesive) vs. "it's" (colloquial for "it is" or "it has")
@@ -468,4 +558,3 @@
     Any remaining "it's" are likely an incorrect spelling of "its".
 
 
-

src/ODE/ODE/ODE.H

@@ -56,8 +56,7 @@ public:
         {}
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~ODE()
     {}
 

src/ODE/ODESolvers/ODESolver/ODESolver.H

@@ -103,8 +103,7 @@ public:
         );
 
 
-    // Destructor
+    //- Destructor
-
     virtual ~ODESolver()
     {}
 

src/OSspecific/POSIX/regExp.H

@@ -102,8 +102,7 @@ public:
         //- Construct from std::string (or string), optionally ignoring case
         regExp(const std::string&, const bool ignoreCase=false);
 
-    // Destructor
+    //- Destructor
-
     ~regExp();
 
 

src/OSspecific/POSIX/signals/sigFpe.H

@@ -99,8 +99,7 @@ public:
         sigFpe();
 
 
-    // Destructor
+    //- Destructor
-
     ~sigFpe();
 
 

src/OSspecific/POSIX/signals/sigInt.H

@@ -70,8 +70,7 @@ public:
         sigInt();
 
 
-    // Destructor
+    //- Destructor
-
     ~sigInt();
 
 

src/OSspecific/POSIX/signals/sigQuit.H

@@ -70,8 +70,7 @@ public:
         sigQuit();
 
 
-    // Destructor
+    //- Destructor
-
     ~sigQuit();