ENH: Added monoatomic object and updated applications.

applications/solvers/discreteMethods/molecularDynamics/mdFoam/Make/options

@@ -1,4 +1,7 @@
+EXE_DEBUG = -DFULLDEBUG -g -O0
+
 EXE_INC = \
+    ${EXE_DEBUG} \
     -I$(LIB_SRC)/lagrangian/molecularDynamics/molecule/lnInclude \
     -I$(LIB_SRC)/lagrangian/molecularDynamics/potential/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \

applications/solvers/discreteMethods/molecularDynamics/mdFoam/createFields.H

@@ -12,16 +12,16 @@
         mesh
     );
 
-    word cloudName("polyatomicCloud");
+    word polyatomicCloudName("polyatomicCloud");
 
-    potential pot
+    potential polyPot
     (
         mesh,
         IOdictionary
         (
             IOobject
             (
-                cloudName +  "Properties",
+                polyatomicCloudName +  "Properties",
                 mesh.time().constant(),
                 mesh,
                 IOobject::MUST_READ_IF_MODIFIED,
@@ -31,4 +31,25 @@
         )
     );
 
-    polyatomicCloud molecules(cloudName, mesh, pot);
+    polyatomicCloud polyatomics(polyatomicCloudName, mesh, polyPot);
+
+    word monoatomicCloudName("monoatomicCloud");
+
+    potential monoPot
+    (
+        mesh,
+        IOdictionary
+        (
+            IOobject
+            (
+                monoatomicCloudName +  "Properties",
+                mesh.time().constant(),
+                mesh,
+                IOobject::MUST_READ_IF_MODIFIED,
+                IOobject::NO_WRITE,
+                false
+            )
+        )
+    );
+
+    monoatomicCloud monoatomics(monoatomicCloudName, mesh, monoPot);

applications/solvers/discreteMethods/molecularDynamics/mdFoam/mdFoam.C

@@ -30,6 +30,7 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "fvCFD.H"
+#include "monoatomicCloud.H"
 #include "polyatomicCloud.H"
 
 int main(int argc, char *argv[])
@@ -47,11 +48,13 @@ int main(int argc, char *argv[])
     {
         Info<< "Time = " << runTime.timeName() << endl;
 
-        molecules.evolve();
+        monoatomics.evolve();
+
+        polyatomics.evolve();
 
         runTime.write();
 
-        Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
+        Info<< nl << "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
             << "  ClockTime = " << runTime.elapsedClockTime() << " s"
             << nl << endl;
     }