CrdirectInteractionList building switchable using PP or PFEE. New solver to test rewritten moleculeCloud etc

applications/solvers/molecularDynamics/mdFoam/Make/files

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+mdFoam.C
+
+EXE = $(FOAM_APPBIN)/mdFoam

applications/solvers/molecularDynamics/mdFoam/Make/options

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+EXE_INC = \
+    -I$(LIB_SRC)/lagrangian/molecularDynamics/molecule/lnInclude \
+    -I$(LIB_SRC)/lagrangian/molecularDynamics/potential/lnInclude \
+    -I$(LIB_SRC)/lagrangian/molecularDynamics/molecularMeasurements/lnInclude \
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/lagrangian/basic/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = \
+    -lmeshTools \
+    -lfiniteVolume \
+    -llagrangian \
+    -lmolecule \
+    -lpotential \
+    -lmolecularMeasurements
+

applications/solvers/molecularDynamics/mdFoam/mdFoam.C

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+/*---------------------------------------------------------------------------*\
+ =========                   |
+ \\      /   F ield          | OpenFOAM: The Open Source CFD Toolbox
+  \\    /    O peration      |
+   \\  /     A nd            | Copyright (C) 1991-2008 OpenCFD Ltd.
+    \\/      M anipulation   |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Application
+    mdFoam
+
+Description
+    molecular dynamics solver for fluid dynamics
+
+\*---------------------------------------------------------------------------*/
+
+#include "fvCFD.H"
+//#include "md.h"
+#include "interactionLists.H"
+
+int main(int argc, char *argv[])
+{
+
+#   include "setRootCase.H"
+#   include "createTime.H"
+#   include "createMesh.H"
+
+    interactionLists il(mesh, (1e-9*1e-9), false);
+
+    Info<< labelListList(il.dil()) << endl;
+
+    Info << "\nStarting time loop\n" << endl;
+
+    while (runTime.run())
+    {
+        runTime++;
+
+        Info << "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
+            << "  ClockTime = " << runTime.elapsedClockTime() << " s"
+            << nl << endl;
+    }
+
+    Info << "End\n" << endl;
+
+    return(0);
+}