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Merge remote branch 'OpenCFD/master' into olesenm

Browse Source 
Conflicts:
	bin/foamExec
This commit is contained in:
Mark Olesen
2010-07-06 14:30:30 +02:00
parent 9745b86ef3 4b307cf543
commit fd0bcbb480
11 changed files with 176 additions and 24 deletions
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89
applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C
View File

@ -430,6 +430,59 @@ int main(int argc, char *argv[])
<< "Band before renumbering: "
<< returnReduce(band, maxOp<label>()) << nl << endl;
// Read parallel reconstruct maps
labelIOList cellProcAddressing
(
IOobject
(
"cellProcAddressing",
mesh.facesInstance(),
polyMesh::meshSubDir,
mesh,
IOobject::READ_IF_PRESENT
),
labelList(0)
);
labelIOList faceProcAddressing
(
IOobject
(
"faceProcAddressing",
mesh.facesInstance(),
polyMesh::meshSubDir,
mesh,
IOobject::READ_IF_PRESENT
),
labelList(0)
);
labelIOList pointProcAddressing
(
IOobject
(
"pointProcAddressing",
mesh.pointsInstance(),
polyMesh::meshSubDir,
mesh,
IOobject::READ_IF_PRESENT
),
labelList(0)
);
labelIOList boundaryProcAddressing
(
IOobject
(
"boundaryProcAddressing",
mesh.pointsInstance(),
polyMesh::meshSubDir,
mesh,
IOobject::READ_IF_PRESENT
),
labelList(0)
);
// Read objects in time directory
IOobjectList objects(mesh, runTime.timeName());
@ -579,6 +632,39 @@ int main(int argc, char *argv[])
// Update fields
mesh.updateMesh(map);
// Update proc maps
if (cellProcAddressing.headerOk())
{
Info<< "Renumbering processor cell decomposition map "
<< cellProcAddressing.name() << endl;
cellProcAddressing = labelList
(
UIndirectList<label>(cellProcAddressing, map().cellMap())
);
}
if (faceProcAddressing.headerOk())
{
Info<< "Renumbering processor face decomposition map "
<< faceProcAddressing.name() << endl;
faceProcAddressing = labelList
(
UIndirectList<label>(faceProcAddressing, map().faceMap())
);
}
if (pointProcAddressing.headerOk())
{
Info<< "Renumbering processor point decomposition map "
<< pointProcAddressing.name() << endl;
pointProcAddressing = labelList
(
UIndirectList<label>(pointProcAddressing, map().pointMap())
);
}
// Move mesh (since morphing might not do this)
if (map().hasMotionPoints())
{
@ -652,7 +738,8 @@ int main(int argc, char *argv[])
{
mesh.setInstance(oldInstance);
}
Info<< "Writing mesh to " << runTime.timeName() << endl;
Info<< "Writing mesh to " << mesh.facesInstance() << endl;
mesh.write();

1
applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3FoamMeshVolume.C
View File

@ -31,6 +31,7 @@ License
#include "cellModeller.H"
#include "vtkOpenFOAMPoints.H"
#include "Swap.H"
#include "longLong.H"
// VTK includes
#include "vtkCellArray.h"

8
applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3FoamPointFields.H
View File

@ -195,7 +195,15 @@ void Foam::vtkPV3Foam::convertPointField
// Note: using the name of the original volField
// not the name generated by the interpolation "volPointInterpolate(<name>)"
if (&tf != &GeometricField<Type, fvPatchField, volMesh>::null())
{
pointData->SetName(tf.name().c_str());
}
else
{
pointData->SetName(ptf.name().c_str());
}
if (debug)
{

22
bin/foamEtcFile
View File

@ -82,6 +82,9 @@ mode=ugo
prefix="$WM_PROJECT_INST_DIR"
version="$WM_PROJECT_VERSION"
# default naming convention is "OpenFOAM-<VERSION>"
projectNamePrefix="${WM_PROJECT:-OpenFOAM}-"
unset listOpt quietOpt
# parse options
@ -132,6 +135,23 @@ do
esac
done
#
# handle standard and debian naming convention
#
case "$version" in
OpenFOAM-*) # standard naming convention OpenFOAM-<VERSION>
projectNamePrefix="OpenFOAM-"
version="${version##OpenFOAM-}"
;;
openfoam[0-9]*) # debian naming convention 'openfoam<VERSION>'
projectNamePrefix="openfoam"
version="${version##openfoam}"
;;
esac
# Save the essential bits of information:
nArgs=$#
fileName="$1"
@ -154,7 +174,7 @@ esac
case "$mode" in
*o*) # other (shipped)
dirList="$dirList $prefix/${WM_PROJECT:-OpenFOAM}-$version/etc"
dirList="$dirList $prefix/$projectNamePrefix$version/etc"
;;
esac
set -- $dirList

32
bin/foamExec
View File

@ -35,6 +35,10 @@
# mpirun -np <nProcs> \
# foamExec -v <foamVersion> <foamCommand> ... -parallel
#
# Note: - not consistent with foamEtcFiles - does not search 'site'
# directories
# - version switch -v will not work with the debian naming
# openfoamXXX
#------------------------------------------------------------------------------
usage() {
while [ "$#" -ge 1 ]; do echo "$1"; shift; done
@ -54,7 +58,7 @@ USAGE
}
# This script must exist in <foamInstall>/OpenFOAM-<VERSION>/bin/
# or <foamInstall>/openfoamVERSION/bin/
# or <foamInstall>/openfoam<VERSION>/bin/ (for the debian version)
#
# the bindir:
@ -71,12 +75,31 @@ foamInstall="$prefixDir"
# the name used for the project directory
projectDirName="${projectDir##*/}"
# version from OpenFOAM-VERSION (normal) or openfoamVERSION (debian)
version=$(echo $projectDirName | sed -e 's@^openfoam-*@@i')
#
# handle standard and debian naming convention
#
case "$projectDirName" in
OpenFOAM-*) # standard naming convention OpenFOAM-<VERSION>
projectNamePrefix="OpenFOAM-"
version="${projectDirName##OpenFOAM-}"
versionNum=$version
;;
openfoam[0-9]*) # debian naming convention 'openfoam<VERSION>'
projectNamePrefix="openfoam"
versionNum="${projectDirName##openfoam}"
version=$WM_PROJECT_DIR
;;
*)
echo "Error : unknown/unsupported naming convention"
exit 1
;;
esac
# debugging:
# echo "Installed locations:"
# for i in projectDir prefixDir foamInstall projectDirName version
# for i in projectDir prefixDir foamInstall projectDirName version versionNum
# do
# eval echo "$i=\$$i"
# done
@ -92,6 +115,7 @@ do
-v | version)
[ "$#" -ge 2 ] || usage "'$1' option requires an argument"
version=$2
versionNum=$version
shift 2
;;
--)

3
etc/apps/paraview3/bashrc
View File

@ -51,7 +51,7 @@ done
# set VERSION and MAJOR (version) variables if not already set
[ -n "$ParaView_VERSION" ] || ParaView_VERSION=3.6.1
[ -n "$ParaView_VERSION" ] || ParaView_VERSION=3.8.0
[ -n "$ParaView_MAJOR" ] || ParaView_MAJOR=unknown
# if needed, set MAJOR version to correspond to VERSION
@ -75,6 +75,7 @@ export ParaView_DIR=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/paraview-
if [ -r $ParaView_DIR -o -r $paraviewInstDir ]
then
export PATH=$ParaView_DIR/bin:$PATH
export LD_LIBRARY_PATH=$ParaView_DIR/lib/paraview-$ParaView_MAJOR:$LD_LIBRARY_PATH
export PV_PLUGIN_PATH=$FOAM_LIBBIN/paraview-$ParaView_MAJOR
# add in python libraries if required

3
etc/apps/paraview3/cshrc
View File

@ -49,7 +49,7 @@ foreach cmake ( cmake-2.8.1 cmake-2.8.0 cmake-2.6.4 )
end
# set VERSION and MAJOR (version) variables if not already set
if ( ! $?ParaView_VERSION ) setenv ParaView_VERSION 3.6.1
if ( ! $?ParaView_VERSION ) setenv ParaView_VERSION 3.8.0
if ( ! $?ParaView_MAJOR ) setenv ParaView_MAJOR unknown
# if needed, set MAJOR version to correspond to VERSION
@ -73,6 +73,7 @@ setenv ParaView_DIR $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/paraview-
# set paths if binaries or source are present
if ( -r $ParaView_DIR || -r $paraviewInstDir ) then
setenv PATH ${ParaView_DIR}/bin:${PATH}
setenv LD_LIBRARY_PATH "${ParaView_DIR}/lib/paraview-${ParaView_MAJOR}:${LD_LIBRARY_PATH}"
setenv PV_PLUGIN_PATH $FOAM_LIBBIN/paraview-${ParaView_MAJOR}
# add in python libraries if required

4
etc/bashrc
View File

@ -32,7 +32,7 @@
#------------------------------------------------------------------------------
export WM_PROJECT=OpenFOAM
[ -z "$WM_PROJECT_VERSION" ] && export WM_PROJECT_VERSION=1.6
[ -z "$WM_PROJECT_VERSION" ] && export WM_PROJECT_VERSION=dev
################################################################################
# USER EDITABLE PART. Note changes made here may be lost with the next upgrade
@ -131,7 +131,7 @@ unset WM_COMPILER_ARCH WM_COMPILER_LIB_ARCH
# WM_COMPILE_OPTION = Opt | Debug | Prof
: ${WM_COMPILE_OPTION:=Opt}; export WM_COMPILE_OPTION
# WM_MPLIB = | OPENMPI | MPICH | MPICH-GM | HPMPI | GAMMA | MPI | QSMPI
# WM_MPLIB = SYSTEMOPENMPI | OPENMPI | MPICH | MPICH-GM | HPMPI | GAMMA | MPI | QSMPI
: ${WM_MPLIB:=OPENMPI}; export WM_MPLIB

4
etc/cshrc
View File

@ -31,7 +31,7 @@
#------------------------------------------------------------------------------
setenv WM_PROJECT OpenFOAM
if ( ! $?WM_PROJECT_VERSION ) setenv WM_PROJECT_VERSION 1.6
if ( ! $?WM_PROJECT_VERSION ) setenv WM_PROJECT_VERSION dev
################################################################################
# USER EDITABLE PART. Note changes made here may be lost with the next upgrade
@ -119,7 +119,7 @@ if ( ! $?WM_PRECISION_OPTION ) setenv WM_PRECISION_OPTION DP
# WM_COMPILE_OPTION = Opt | Debug | Prof
if ( ! $?WM_COMPILE_OPTION ) setenv WM_COMPILE_OPTION Opt
# WM_MPLIB = | OPENMPI | MPICH | MPICH-GM | HPMPI | GAMMA | MPI | QSMPI
# WM_MPLIB = SYSTEMOPENMPI | OPENMPI | MPICH | MPICH-GM | HPMPI | GAMMA | MPI | QSMPI
if ( ! $?WM_MPLIB ) setenv WM_MPLIB OPENMPI

18
etc/settings.csh
View File

@ -82,7 +82,7 @@ unsetenv MPFR_ARCH_PATH
# Select compiler installation
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# compilerInstall = OpenFOAM | system
if ( ! $?compilerInstall ) set compilerInstall=OpenFOAM
if ( ! $?compilerInstall ) set compilerInstall=system
switch ("$compilerInstall")
case OpenFOAM:
@ -209,14 +209,20 @@ case OPENMPI:
breaksw
case SYSTEMOPENMPI:
# use the system installed openmpi, get library directory via mpicc
# This uses the installed openmpi. It needs mpicc installed!
set mpi_version=openmpi-system
set libDir=`mpicc --showme:link | sed -e 's/.*-L\([^ ]*\).*/\1/'`
# Set compilation flags here instead of in wmake/rules/../mplibSYSTEMOPENMPI
setenv PINC "`mpicc --showme:compile`"
setenv PLIBS "`mpicc --showme:link`"
set libDir=`echo "$PLIBS" | sed -e 's/.*-L\([^ ]*\).*/\1/'`
if ($?FOAM_VERBOSE && $?prompt) then
echo "Using system installed OpenMPI:"
echo " compile flags : `mpicc --showme:compile`"
echo " link flags : `mpicc --showme:link`"
echo "Using system installed MPI:"
echo " compile flags : $PINC"
echo " link flags : $PLIBS"
echo " libmpi dir : $libDir"
endif

14
etc/settings.sh
View File

@ -105,7 +105,7 @@ unset MPFR_ARCH_PATH
# Select compiler installation
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# compilerInstall = OpenFOAM | system
: ${compilerInstall:=OpenFOAM}
: ${compilerInstall:=system}
case "${compilerInstall:-OpenFOAM}" in
OpenFOAM)
@ -237,13 +237,17 @@ OPENMPI)
SYSTEMOPENMPI)
# use the system installed openmpi, get library directory via mpicc
mpi_version=openmpi-system
libDir=`mpicc --showme:link | sed -e 's/.*-L\([^ ]*\).*/\1/'`
# Set compilation flags here instead of in wmake/rules/../mplibSYSTEMOPENMPI
export PINC="`mpicc --showme:compile`"
export PLIBS="`mpicc --showme:link`"
libDir=`echo "$PLIBS" | sed -e 's/.*-L\([^ ]*\).*/\1/'`
if [ "$FOAM_VERBOSE" -a "$PS1" ]
then
echo "Using system installed OpenMPI:"
echo " compile flags : `mpicc --showme:compile`"
echo " link flags : `mpicc --showme:link`"
echo "Using system installed MPI:"
echo " compile flags : $PINC"
echo " link flags : $PLIBS"
echo " libmpi dir : $libDir"
fi