GIT: Initial commit after latest foundation merge

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/Allclean

@@ -1,30 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1    # Run from this directory
-
-# Source tutorial clean functions
-. $WM_PROJECT_DIR/bin/tools/CleanFunctions
-
-(
-    cd periodicCubeArgon || exit
-
-    rm -rf 0/lagrangian 0/uniform
-    rm -f Ar-Ar
-    rm -f electrostatic
-    rm -f constant/idList
-    rm -rf constant/polyMesh/sets
-    cleanCase
-)
-
-
-(
-    cd periodicCubeWater || exit
-
-    rm -rf 0/lagrangian 0/uniform
-    rm -f O-O
-    rm -f electrostatic
-    rm -f constant/idList
-    rm -rf constant/polyMesh/sets
-    cleanCase
-)
-
-# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/Allrun

@@ -1,18 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1    # Run from this directory
-
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-for caseName in periodicCubeArgon periodicCubeWater
-do
-(
-    cd $caseName || exit
-
-    runApplication blockMesh
-    runApplication mdInitialise
-    runApplication `getApplication`
-)
-done
-# ----------------------------------------------------------------- end-of-file

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/periodicCubeArgon/Allclean

@@ -0,0 +1,14 @@
+#!/bin/sh
+cd ${0%/*} || exit 1    # Run from this directory
+
+# Source tutorial clean functions
+. $WM_PROJECT_DIR/bin/tools/CleanFunctions
+
+rm -rf 0/lagrangian 0/uniform
+rm -f Ar-Ar
+rm -f electrostatic
+rm -f constant/idList
+rm -rf constant/polyMesh/sets
+cleanCase
+
+#------------------------------------------------------------------------------

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/periodicCubeArgon/Allrun

@@ -0,0 +1,11 @@
+#!/bin/sh
+cd ${0%/*} || exit 1    # Run from this directory
+
+# Source tutorial run functions
+. $WM_PROJECT_DIR/bin/tools/RunFunctions
+
+runApplication blockMesh
+runApplication mdInitialise
+runApplication `getApplication`
+
+#------------------------------------------------------------------------------

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/periodicCubeWater/Allclean

@@ -0,0 +1,14 @@
+#!/bin/sh
+cd ${0%/*} || exit 1    # Run from this directory
+
+# Source tutorial clean functions
+. $WM_PROJECT_DIR/bin/tools/CleanFunctions
+
+rm -rf 0/lagrangian 0/uniform
+rm -f O-O
+rm -f electrostatic
+rm -f constant/idList
+rm -rf constant/polyMesh/sets
+cleanCase
+
+#------------------------------------------------------------------------------

tutorials/discreteMethods/molecularDynamics/mdEquilibrationFoam/periodicCubeWater/Allrun

@@ -0,0 +1,11 @@
+#!/bin/sh
+cd ${0%/*} || exit 1    # Run from this directory
+
+# Source tutorial run functions
+. $WM_PROJECT_DIR/bin/tools/RunFunctions
+
+runApplication blockMesh
+runApplication mdInitialise
+runApplication `getApplication`
+
+#------------------------------------------------------------------------------