Commit Graph

193 Commits

Author SHA1 Message Date
0abafd98c7 BUG: areaWrite fails with partial fields (#2084)
- depending on how the finiteArea is split up across processors,
  it is possible that some processors have failed to register
  fields in their object registry.

  Now ensure that the field names are synchronized in parallel before
  attempting a write. Replace locally missing fields with a dummy
  zero-sized field.
2021-05-27 21:04:16 +02:00
c410edf928 ENH: centralized handling of -allRegions, -regions, -region (#2072)
Step 1.
    include "addAllRegionOptions.H"

    Adds the -allRegions, -regions and -region options to argList.

Step 2.
    include "getAllRegionOptions.H"

    Processes the options with -allRegions selecting everything
    from the regionProperties.

    OR use -regions to specify multiple regions (from
       regionProperties), and can also contain regular expressions

    OR use the -region option

    Specifying a single -regions NAME (not a regular expresssion)
    is the same as -region NAME and doesn't use regionProperties

    Creates a `wordList regionNames`

Step 3.
    Do something with the region names.
    Either directly, or quite commonly with the following

    include "createNamedMeshes.H"

    Creates a `PtrList<fvMesh> meshes`

STYLE: add description to some central include files
2021-05-07 09:46:33 +02:00
cf9063878e ENH: improve dynamicCode consistency
- refactor and provision for additional code context
2021-04-19 16:33:42 +00:00
b060378dca ENH: improve consistency of fileName handling windows/non-windows (#2057)
- wrap command-line retrieval of fileName with an implicit validate.

  Instead of this:
      fileName input(args[1]);
      fileName other(args["someopt"]);

  Now use this:
      auto input = args.get<fileName>(1);
      auto other = args.get<fileName>("someopt");

  which adds a fileName::validate on the inputs

  Because of how it is implemented, it will automatically also apply
  to argList getOrDefault<fileName>, readIfPresent<fileName> etc.

- adjust fileName::validate and clean to handle backslash conversion.
  This makes it easier to ensure that path names arising from MS-Windows
  are consistently handled internally.

- dictionarySearch: now check for initial '/' directly instead of
  relying on fileName isAbsolute(), which now does more things

BREAKING: remove fileName::clean() const method

- relying on const/non-const to control the behaviour (inplace change
  or return a copy) is too fragile and the const version was
  almost never used.

  Replace:
      fileName sanitized = constPath.clean();

  With:
      fileName sanitized(constPath);
      sanitized.clean());

STYLE: test empty() instead of comparing with fileName::null
2021-04-19 16:33:42 +00:00
b3142ffb54 ENH: runTimeControl - added option to trigger a fatal error on exit (#2042)
- useful when used in a batch process to trap the exit signal,
  e.g. stop the run when the velocity magnitude exceeds a given
  threshold:

    runTimeControl
    {
        type            runTimeControl;
        libs            ("libutilityFunctionObjects.so");
        nWriteStep      1;

        // Optional end 'action'
        satisfiedAction abort; // end; // setTrigger

        conditions
        {
            maxU
            {
                type            minMax;
                functionObject  MinMax;
                fields          ("max(mag(U))");
                value           1e6;
                mode            maximum;
            }
        }
    }
2021-03-23 20:49:31 +00:00
2954f55f6a ENH: improve surfaceFieldValue sampling and writing (#1999)
- ensure surface writing is time-step and nFields aware.
  This avoids overwriting (ignoring) previous output fields.

- allow sampled surfaces to be used for weight fields as well.
  Not sure why this restriction was still there.

- remove old compatibility reading of orientedFields.
  Last used in v1612, now removed.

- only use face sampling. For surfaceFieldValue we can only do
  something meaningful with face values.

ENH: modify interface methods for surfaceWriter

- replace direct modification of values with setter methods.
  Eg,
     old: writer.isPointData() = true;
     new: writer.isPointData(true);

  This makes it possible to add internal hooks to catch state changes.

ENH: allow post-construction change to sampledSurface interpolation

- rename interpolate() method to isPointData() for consistency with
  other classes and to indicate that it is a query.

- additional isPointData(bool) setter method to change the expected
  representation type after construction

- remove 'interpolate' restriction on isoSurfacePoint which was
  previously flagged as an error but within sampledSurfaces can use
  sampleScheme cellPoint and obtain representative samples.
  Relax this restriction since this particular iso-surface algorithm
  is slated for removal in the foreseeable future.
2021-02-16 14:30:19 +01:00
89f2cda3ab ENH: mpi: use per-application communicator. 2020-12-09 15:17:44 +00:00
d2f1690536 ENH: align Enum methods with HashTable
- deprecate get(key, deflt) in favour of lookup(key, deflt).
  Method name compatibility with HashTable.

- deprecate operator().
  The meaning is too opaque and equally served by other means:

  - use get(key) instead of operator()(key).
    Const access whereas HashTable::operator()(key)
    creates missing entry.

  - lookup(key, deflt) - instead of operator()(key, deflt).
    Const access whereas HashTable::operator()(key, deflt)
    creates a missing entry.

- make Enum iterable to allow participation in range-for etc.
2020-11-25 19:53:02 +01:00
07bbae0c55 STYLE: use brace constructors for Foam::zero and Foam::one
- makes it clearer that these are constructors and not function calls
2020-11-19 16:57:45 +01:00
f999013f41 ENH: use static to define default blockMesh verbosity
- make handling of verbosity more consistent.

  Make all setter return the old value, remove (unused) default
  parameter as being counter-intuitive.  This makes it easier to
  restore the original values.

  For example,

     const bool oldVerbose = sampler.verbose(false);
     ...
     sampler.verbose(oldVerbose);
2020-10-28 16:04:12 +01:00
12c91b9472 STYLE: check autoPtr as plain bool instead of valid()
- cleaner code, more similarity with unique_ptr

  Now
      if (ptr)
      if (!ptr)

  instead
      if (ptr.valid())
      if (!ptr.valid())
2020-07-16 11:39:24 +02:00
9af3f85cf9 STYLE: simplify short-circuit involving autoPtr (#1775)
- with '&&' conditions, often better to check for non-null autoPtr
  first (it is cheap)

- check as bool instead of valid() method for cleaner code, especially
  when the wrapped item itself has a valid/empty or good.
  Also when handling multiple checks.

  Now
      if (ptr && ptr->valid())
      if (ptr1 || ptr2)

  instead
      if (ptr.valid() && ptr->valid())
      if (ptr1.valid() || ptr2.valid())
2020-07-16 10:17:25 +02:00
1e7c6ea2f1 ENH: mutable libs() access in Time and other classes (#1737)
- This reflects the pre-existing coding situation where const_cast was
  used throughout to effect the same.

STYLE: fix private/protected access

- CodedField, codedMixedFvPatchField
2020-07-14 11:19:05 +02:00
01ec92fd35 GIT: remove leading/trailing blank lines, trailing whitespace 2020-06-17 10:46:26 +02:00
3e43edf056 ENH: unify use of dictionary method names
- previously introduced `getOrDefault` as a dictionary _get_ method,
  now complete the transition and use it everywhere instead of
  `lookupOrDefault`. This avoids mixed usage of the two methods that
  are identical in behaviour, makes for shorter names, and promotes
  the distinction between "lookup" access (ie, return a token stream,
  locate and return an entry) and "get" access (ie, the above with
  conversion to concrete types such as scalar, label etc).
2020-06-02 17:26:03 +02:00
997c9a232c STYLE: use compact form for libs () entries 2020-05-23 18:42:47 +02:00
0680416b59 COMP: tag lookupObjectPtr and lookupObjectRefPtr as deprecated
- were deprecated via comments (2018-10).
  Now mark with compilation warning
2020-05-01 16:42:55 +02:00
2416599ea9 STYLE: format consistency for copyright 2020-04-15 23:28:41 +02:00
33f9ae5080 ENH: improvements to IOstreamOption
* Support default values for format/compress enum lookups.

  - Avoids situations where the preferred default format is not ASCII.
    For example, with dictionary input:

        format binar;

    The typing mistake would previously have caused formatEnum to
    default to ASCII. We can now properly control its behaviour.

        IOstream::formatEnum
        (
            dict.get<word>("format"), IOstream::BINARY
        );

    Allowing us to switch ascii/binary, using BINARY by default even in
    the case of spelling mistakes. The mistakes are flagged, but the
    return value can be non-ASCII.

* The format/compression lookup behave as pass-through if the lookup
  string is empty.

  - Allows the following to work without complaint

      IOstream::formatEnum
      (
          dict.getOrDefault("format", word::null), IOstream::BINARY
      );

  - Or use constructor-like failsafe method

      IOstream::formatEnum("format", dict, IOstream::BINARY);

  - Apply the same behaviour with setting stream format/compression
    from a word.

       is.format("binar");

    will emit a warning, but leave the stream format UNCHANGED

* Rationalize versionNumber construction

  - constexpr constructors where possible.
    Default construct is the "currentVersion"

  - Construct from token to shift the burden to versionNumber.
    Support token as argument to version().

    Now:

        is.version(headerDict.get<token>("version"));

    or failsafe constructor method

        is.version
        (
            IOstreamOption::versionNumber("version", headerDict)
        );

    Before (controlled input):

        is.version
        (
            IOstreamOption::versionNumber
            (
                headerDict.get<float>("version")
            )
        );

    Old, uncontrolled input - has been removed:

        is.version(headerDict.lookup("version"));

* improve consistency, default behaviour for IOstreamOption construct

  - constexpr constructors where possible

  - add copy construct with change of format.

  - construct IOstreamOption from streamFormat is now non-explicit.
    This is a commonly expected result with no ill-effects
2020-02-18 21:51:35 +01:00
a97628121c ENH: overhaul ensight handling (#1579)
- includes restructuring and simplification of low-level ensight part
  handling and refactor of backends to improve code reuse.

foamToEnsight
-------------

  * new cellZone support.
    This was previously only possible via a separate foamToEnsightParts
    utility that was not parallelized.

  * support for point fields.

  * `-nearCellValue` option (as per foamToVTK)

  * data indexing now uses values from the time index.
    This is consistent with the ensightWrite function object and
    can help with restarts.

  * existing ensight directories are removed, unless the -no-overwrite
    option is supplied

foamToEnsightParts
------------------
  * now redundant and removed.

ensightOutputSurface (new class)
--------------------------------
  * a lightweight wrapper for point/face references that is tailored
    for the ensightSurfaceWriter. It uses compact face/point information
    and is serial only, since this is the format requirements from the
    surfaceWriter class.

ensightMesh (revised class)
---------------------------
  * now only holds a polyMesh reference, which removes its dependency
    on finiteVolume and allows it to be relocated under fileFormats
    instead of conversion.

Removed classes: ensightParts, ensighPartFaces, ensightPartCells

- these were used by foamToEnsightParts, but not needed anymore.
2020-02-18 11:09:43 +00:00
1a16207e0d COMP: compilation of Test-QRMatrix (clang, int64)
- remove unused local functions from volumeExprDriver
2019-12-16 11:22:15 +01:00
31aad2159f STYLE: writeFile - renamed writeTime to writeCurrentTime to avoid conflicts 2019-09-09 09:19:38 +01:00
7c1190f0b1 ENH: rationalize some string methods.
- silently deprecate 'startsWith', 'endsWith' methods
  (added in 2016: 2b14360662), in favour of
  'starts_with', 'ends_with' methods, corresponding to C++20 and
  allowing us to cull then in a few years.

- handle single character versions of starts_with, ends_with.

- add single character version of removeEnd and silently deprecate
  removeTrailing which did the same thing.

- drop the const versions of removeRepeated, removeTrailing.
  Unused and with potential confusion.

STYLE: use shrink_to_fit(), erase()
2019-11-11 18:50:00 +01:00
fdf8d10ab4 Merge commit 'e9219558d7' into develop-v1906 2019-12-05 11:47:19 +00:00
e9219558d7 GIT: Header file updates 2019-10-31 14:48:44 +00:00
f94be1bebb ENH: use FatalIOErrorInLookup instead of FatalErrorInLookup 2019-07-16 10:26:51 +02:00
fb09f56aba ENH: use FatalErrorInLookup macros (#1362) 2019-07-12 18:00:00 +02:00
5215aab719 ENH: averageCondition - result now 'false' if no fields were processed 2019-06-20 12:10:12 +01:00
c901f9bc7f ENH: runTimeControl - updated time for maxDuration and minTimeStep conditions 2019-06-19 09:57:11 +01:00
2413d4d898 STYLE: consistent brackets for Enum construction 2019-05-31 10:44:23 +02:00
9988e549e0 STYLE: writeDictionary - updated output messages 2019-05-31 15:04:15 +01:00
d9cefeff99 STYLE: writeDictionary - updated output format 2019-05-23 12:55:32 +01:00
0adcd1ec47 ENH: timeInfo function object (#1320)
- records execution and wallclock times to postProcessing/
  which can be more convenient than parsing a log file.
2019-05-15 09:21:45 +01:00
5f9b6d7a74 STYLE: parProfiling: no tabs 2019-05-15 10:01:54 +01:00
c46fe63b97 ENH: parProfiling: do not print on exit. Fixes #1298. 2019-05-15 08:30:06 +01:00
a85c55bbb5 ENH: ensure that content changes in coded objects are noticed (#1293)
- for codedFunctionObject and CodedSource the main code snippets
  were not included in the SHA1 calculation, which meant that many
  changes would not be noticed and no new library would be compiled.

  As a workaround, a dummy 'code' entry could be used solely for the
  purposes of generating a SHA1, but this is easily forgotten.

  We now allow tracking of the dynamicCodeContext for the coded
  objects and append to the SHA1 hasher with specific entries.
  This should solve the previous misbehaviour.

  We additionally add information about the ordering of the code
  sections. Suppose we have a coded function object (all code
  segments are optional) with the following:

      codeExecute "";
      codeWrite   #{ Info<< "Called\n"; #};

  which we subsequently change to this:

      codeExecute #{ Info<< "Called\n"; #};
      codeWrite   "";

  If the code strings are simply concatenated together, the SHA1 hashes
  will be identical. We thus 'salt' with their semantic locations,
  choosing tags that are unlikely to occur within the code strings
  themselves.

- simplify the coded templates with constexpr for the SHA1sum
  information.

- Correct the CodedSource to use 'codeConstrain' instead of
  'codeSetValue' for consistency with the underlying functions.
2019-05-01 14:00:54 +02:00
beefee48d4 COMP: adjust compilation order with updated interdependencies
- Eg, with surface writers now in surfMesh, there are fewer libraries
  depending on conversion and sampling.

COMP: regularize linkage ordering and avoid some implicit linkage (#1238)
2019-04-28 14:44:33 +02:00
828f8e8504 ENH: add simple profiling of MPI communications 2019-04-25 15:33:51 +02:00
159ee1d95f ENH: solverInfo - separated execute and write functionality 2019-04-17 09:24:54 +01:00
8bd6568d05 ENH: added areaWrite function object (#1237)
- write finiteArea meshes and fields to standard surface output
  formats (Ensight, VTK, etc).
2019-03-13 19:44:51 +01:00
47b0de6d68 STYLE: fix doxygen comment for vtkWrite 2019-03-13 12:54:44 +01:00
5d445f4ed6 ENH: suppress cell/patch/proc ids for foamToVTK (#1230)
- reduces output size, consistent with vtkWrite function object

STYLE: mark some foamToVTK options as advanced (ie, visible with -help-full)
2019-03-11 11:02:58 +01:00
24861f5158 ENH: for-range, forAllIters() ... in functionObjects/
- reduced clutter when iterating over containers
2019-01-07 09:20:51 +01:00
e2754962cc ENH: add remove objects handling in timeFunctionObject and regionFunctionObject
- makes it easier to implement functionObject or field object removal
2019-02-08 17:47:45 +01:00
8f92fa016f ENH: write/clear on all components (issue #1199)
- use registry checkOut for removeRegisteredObject function object
2019-02-11 10:12:17 +01:00
154029ddd0 BOT: Cleaned up header files 2019-02-06 12:28:23 +00:00
b7fb6116c3 ENH: restructuring of ensight output files
- changed ensightOutput from a class solely comprising static methods to
  a namespace and added in sub-namespaces Detail and Serial.

  This makes it easier to "mix-in" functions at different levels.
  Refactored and combined some serial/parallel code where possible.

  The general ensightOutput namespace has now shifted to be in the
  fileFormats lib, while leaving volField outputs in the conversion lib
  and cloud outputs in the lagrangian-intermediate lib.

  The ensightCloud namespace is now simply folded into the new
  ensightOutput namespace.

  These changes clean up some code, reduce fragmentation and
  duplication and removes the previous libconversion dependency for
  sampling.

- use int for ensight nTypes constexpr

Note: issue #1176 is unaffected except for the change in file name:

   ensightOutputTemplates.C -> ensightOutputVolFieldTemplates.C
2019-01-29 15:18:17 +01:00
94070f5ee7 STYLE: Renamed residuals FO -> solverInfo to reflect capabilities 2019-01-29 13:52:37 +00:00
c4aebc3c8e ENH: avoid double write triggering in writeObjects functionObject
- in the previous version, a specification such as (U "U.*")
  would have selected the field name twice for writing
2019-01-25 12:04:23 +01:00
ad7f29466a ENH: added timeFunctionObject virtual class in inheritance hierarchy
- simply a functionObject with an additional Time reference, which is
  a combination frequently used by concrete functionObjects
2019-01-25 08:56:21 +01:00