Commit Graph

228 Commits

Author SHA1 Message Date
3d608bf06a ENH: remove reliance on the Xfer class (issue #639)
This class is largely a pre-C++11 holdover. It is now possible to
simply use move construct/assignment directly.

In a few rare cases (eg, polyMesh::resetPrimitives) it has been
replaced by an autoPtr.
2018-03-05 13:28:53 +01:00
660f3e5492 ENH: cleanup autoPtr class (issue #639)
Improve alignment of its behaviour with std::unique_ptr

  - element_type typedef
  - release() method - identical to ptr() method
  - get() method to get the pointer without checking and without releasing it.
  - operator*() for dereferencing

Method name changes

  - renamed rawPtr() to get()
  - renamed rawRef() to ref(), removed unused const version.

Removed methods/operators

  - assignment from a raw pointer was deleted (was rarely used).
    Can be convenient, but uncontrolled and potentially unsafe.
    Do allow assignment from a literal nullptr though, since this
    can never leak (and also corresponds to the unique_ptr API).

Additional methods

  - clone() method: forwards to the clone() method of the underlying
    data object with argument forwarding.

  - reset(autoPtr&&) as an alternative to operator=(autoPtr&&)

STYLE: avoid implicit conversion from autoPtr to object type in many places

- existing implementation has the following:

     operator const T&() const { return operator*(); }

  which means that the following code works:

       autoPtr<mapPolyMesh> map = ...;
       updateMesh(*map);    // OK: explicit dereferencing
       updateMesh(map());   // OK: explicit dereferencing
       updateMesh(map);     // OK: implicit dereferencing

  for clarity it may preferable to avoid the implicit dereferencing

- prefer operator* to operator() when deferenced a return value
  so it is clearer that a pointer is involve and not a function call
  etc    Eg,   return *meshPtr_;  vs.  return meshPtr_();
2018-02-26 12:00:00 +01:00
c126464d1c ENH: change wordRes to be a List of wordRe instead of a wrapper (issue #259)
- this permits direct storage of a list with additional matcher
  capabilities

- provide wordRes::matcher class for similar behaviour as previously
2018-02-21 10:05:30 +01:00
345a2a42f1 ENH: simplify method names for reading argList options and arguments
- use succincter method names that more closely resemble dictionary
  and HashTable method names. This improves method name consistency
  between classes and also requires less typing effort:

    args.found(optName)        vs.  args.optionFound(optName)
    args.readIfPresent(..)     vs.  args.optionReadIfPresent(..)
    ...
    args.opt<scalar>(optName)  vs.  args.optionRead<scalar>(optName)
    args.read<scalar>(index)   vs.  args.argRead<scalar>(index)

- the older method names forms have been retained for code compatibility,
  but are now deprecated
2018-01-08 15:35:18 +01:00
416a3790ea STYLE: prefer autoPtr::reset() to autoPtr::set()
- in most cases already checked valid() so don't need additional check
  for setting an existing pointer
2017-11-22 19:11:11 +01:00
f2ba618c19 STYLE: consistency in using argList::addArgument, argList::addOption 2017-11-22 12:54:28 +01:00
8730a7622a ENH: enumerations for known cell models in cellModel, ptr/ref lookups
- this provides a better typesafe means of locating predefined cell
  models than relying on strings. The lookup is now ptr() or ref()
  directly. The lookup functions behave like on-demand singletons when
  loading "etc/cellModels".

  Functionality is now located entirely in cellModel but a forwarding
  version of cellModeller is provided for API (but not ABI) compatibility
  with older existing user code.

STYLE: use constexpr for cellMatcher constants
2017-11-18 11:05:05 +01:00
7d7b0bfe84 STYLE: use list methods find/found instead of findIndex function 2017-10-24 19:07:34 +02:00
610854af03 STYLE: minor cleanup after merge 2017-09-22 16:25:17 +02:00
fb20bc107e INT: Updated dependent code following latest set of integrations 2017-09-06 16:05:12 +01:00
d8d6030ab6 INT: Integration of Mattijs' collocated parallel IO additions
Original commit message:
------------------------

Parallel IO: New collated file format

When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor.  Processor directories are named 'processorN',
where N is the processor number.

This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor.  The files are stored in a single
directory named 'processors'.

The new format produces significantly fewer files - one per field, instead of N
per field.  For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.

The file writing can be threaded allowing the simulation to continue running
while the data is being written to file.  NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".

The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:

OptimisationSwitches
{
    ...

    //- Parallel IO file handler
    //  uncollated (default), collated or masterUncollated
    fileHandler uncollated;

    //- collated: thread buffer size for queued file writes.
    //  If set to 0 or not sufficient for the file size threading is not used.
    //  Default: 2e9
    maxThreadFileBufferSize 2e9;

    //- masterUncollated: non-blocking buffer size.
    //  If the file exceeds this buffer size scheduled transfer is used.
    //  Default: 2e9
    maxMasterFileBufferSize 2e9;
}

When using the collated file handling, memory is allocated for the data in the
thread.  maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated.  If the data exceeds this size, the write does not use threading.

When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer.  If the
data exceeds this size, the system uses scheduled communication.

The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters.  Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.

A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
    mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated

An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling

The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
2017-07-07 11:39:56 +01:00
0430ad474f ENH: modifyMesh: added -dict argument 2017-09-07 15:02:39 +01:00
02edc5b206 STYLE: tabs and line length in files, very dubious NULL in ensight reader.
- disable automatically upgrading copyrights in files since changes to
  not automatically imply a change in copyright. Eg, fixing a typo in
  comments, or changing a variable from 'loopI' to 'loopi' etc.
2017-06-26 13:43:05 +02:00
3814762785 ENH: relocate triSurface classes into surfMesh library (issue #294)
- simplifies organization, includes, linkage etc.
2017-05-18 10:42:05 +02:00
f95dbc2049 ENH: refineWallLayer: enable parallel operation. Fixes #454. 2017-04-13 16:30:46 +01:00
4ff163aed7 COMP: combinePatchFaces: missing include file 2016-12-14 11:45:32 +00:00
2c7eff8d6b Merge remote-tracking branch 'origin/feature-cellSetRemove' into develop 2016-12-07 14:13:00 +00:00
1f826361c6 STYLE: Consistency updates to change input of <var>Name to <var>. Fixes #306 2016-11-22 14:50:33 +00:00
95e7faf309 STYLE: use the more succinct forms for argList (issue #307)
* args[int]   vs  args.args()[int]
  * args[word]  vs  args.options()[word]
  etc.
2016-11-20 13:06:57 +01:00
ae3d2f4d57 ENH: topoSet: clear sets upon writing modified mesh. Fixes #129. 2016-11-16 14:58:46 +00:00
1fbcb686ff STYLE: Consistency updates 2016-09-23 16:52:46 +01:00
b9940cbbb1 COMP: Multiple changes - first clean build after latest merge - UNTESTED 2016-09-23 15:36:53 +01:00
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
58f905ff70 C++11: Replaced the C NULL with the safer C++11 nullptr
Requires gcc version 4.7 or higher
2016-08-05 17:19:38 +01:00
d04ea965e2 Update headers 2016-06-20 09:39:47 +01:00
f5ed8e777a autoRefineMesh: corrected source file and executable names 2016-06-10 14:05:30 +01:00
67de20df25 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
ea5401c770 GeometricField::GeometricBoundaryField -> GeometricField::Boundary
When the GeometricBoundaryField template class was originally written it
was a separate class in the Foam namespace rather than a sub-class of
GeometricField as it is now.  Without loss of clarity and simplifying
code which access the boundary field of GeometricFields it is better
that GeometricBoundaryField be renamed Boundary for consistency with the
new naming convention for the type of the dimensioned internal field:
Internal, see commit 4a57b9be2e

This is a very simple text substitution change which can be applied to
any code which compiles with the OpenFOAM-dev libraries.
2016-04-28 07:22:02 +01:00
450728ea84 Standardized cell, patch, face and processor loop index names 2016-04-25 12:00:53 +01:00
43beb06018 Standardized cell, patch and face loop index names 2016-04-25 10:28:32 +01:00
2d5ff31649 boundaryField() -> boundaryFieldRef() 2016-04-24 22:07:37 +01:00
8c6fa81eba vector::zero -> Zero 2016-04-16 18:34:41 +01:00
730f89dc9d Use Zero rather than pTraits<Type>::zero unless a static typed '0' is required 2016-03-22 17:46:52 +00:00
4bc77e6aff Sprucing up the tutorials folder and adding -dict to "collapseEdges"
Patch provided by Bruno Santos
Resolves patch application request http://www.openfoam.org/mantisbt/view.php?id=2015
2016-03-06 19:06:44 +00:00
2bbc844ea0 Rationalize the autoMesh library: autoHexMesh -> snappyHexMesh
autoRefine -> snappyRefine
autoLayer -> snappyLayer
autoSnap -> snappySnap
2016-03-01 16:21:31 +00:00
efb39a8790 ENH: (further) Doxygen documentation updates for module support 2016-06-27 20:34:19 +01:00
d13b2aac5d STYLE: renamed autoRefineMesh->snappyRefineMesh 2016-06-27 19:32:13 +01:00
fd9d801e2d GIT: Initial commit after latest foundation merge 2016-04-25 11:40:48 +01:00
9e3ce4ec7f Merge branch 'master' of develop.openfoam.com:Development/OpenFOAM-plus into feature-shared-file
Conflicts:
	applications/utilities/mesh/advanced/refinementLevel/refinementLevel.C
	applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C
	applications/utilities/miscellaneous/foamHelp/helpTypes/helpBoundary/helpBoundary.C
	applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3FoamUpdateInfo.C
	applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/vtkPV4Foam/vtkPV4FoamUpdateInfo.C
	applications/utilities/postProcessing/turbulence/createTurbulenceFields/createTurbulenceFields.C
	applications/utilities/postProcessing/velocityField/Co/Co.C
	applications/utilities/postProcessing/velocityField/Pe/Pe.C
	applications/utilities/preProcessing/applyBoundaryLayer/applyBoundaryLayer.C
	applications/utilities/preProcessing/changeDictionary/changeDictionary.C
	applications/utilities/preProcessing/setFields/setFields.C
	applications/utilities/surface/surfaceMeshConvert/surfaceMeshConvert.C
	applications/utilities/surface/surfaceMeshExport/surfaceMeshExport.C
	applications/utilities/surface/surfaceMeshImport/surfaceMeshImport.C
	applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C
	src/OpenFOAM/db/IOobject/IOobject.C
	src/OpenFOAM/db/IOobjects/CompactIOList/CompactIOList.C
	src/OpenFOAM/db/IOobjects/IOField/IOField.C
	src/OpenFOAM/db/IOobjects/IOList/IOList.C
	src/OpenFOAM/db/IOobjects/IOPtrList/IOPtrList.C
	src/OpenFOAM/db/IOobjects/IOdictionary/IOdictionary.C
	src/OpenFOAM/db/Time/findInstance.C
	src/OpenFOAM/db/regIOobject/regIOobject.C
	src/OpenFOAM/db/regIOobject/regIOobjectI.H
	src/OpenFOAM/db/regIOobject/regIOobjectRead.C
	src/OpenFOAM/db/regIOobject/regIOobjectWrite.C
	src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/IOmapDistribute.C
	src/OpenFOAM/meshes/polyMesh/polyBoundaryMesh/polyBoundaryMesh.C
	src/OpenFOAM/meshes/polyMesh/zones/ZoneMesh/ZoneMesh.C
	src/dynamicMesh/fvMeshDistribute/IOmapDistributePolyMesh.C
	src/dynamicMesh/motionSolver/componentDisplacement/componentDisplacementMotionSolver.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/hexRef8Data.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/refinementHistory.C
	src/dynamicMesh/polyTopoChange/polyTopoChanger/polyTopoChanger.C
	src/edgeMesh/edgeMeshFormats/edgeMesh/edgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedEdgeMeshFormats/extendedEdgeMeshFormat/extendedEdgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedFeatureEdgeMesh/extendedFeatureEdgeMesh.C
	src/fvMotionSolver/fvMotionSolvers/displacement/interpolation/displacementInterpolationMotionSolver.C
	src/fvMotionSolver/pointPatchFields/derived/uniformInterpolatedDisplacement/uniformInterpolatedDisplacementPointPatchVectorField.C
	src/lagrangian/basic/Cloud/CloudIO.C
	src/meshTools/sets/cellSources/fieldToCell/fieldToCell.C
	src/postProcessing/foamCalcFunctions/basic/addSubtract/addSubtract.C
	src/postProcessing/functionObjects/field/fieldCoordinateSystemTransform/fieldCoordinateSystemTransformTemplates.C
	src/postProcessing/functionObjects/field/readFields/readFieldsTemplates.C
	src/thermophysicalModels/radiation/radiationModels/fvDOM/radiativeIntensityRay/radiativeIntensityRay.C
	src/triSurface/triSurface/surfacePatch/surfacePatchIOList.C
2016-01-25 16:29:04 +00:00
e424059208 ENH: glboal file handling: initial commit
Moved file path handling to regIOobject and made it type specific so
now every object can have its own rules. Examples:
- faceZones are now processor local (and don't search up anymore)
- timeStampMaster is now no longer hardcoded inside IOdictionary
  (e.g. uniformDimensionedFields support it as well)
- the distributedTriSurfaceMesh is properly processor-local; no need
  for fileModificationChecking manipulation.
2016-01-25 13:03:15 +00:00
56fa7c0906 Update code to use the simpler C++11 template syntax removing spaces between closing ">"s 2016-01-10 22:41:16 +00:00
f0c3e8d599 STYLE: Updated version to 'plus' 2015-12-22 23:14:17 +00:00
04752147c8 GIT: Resolved conflict on merge from upstream 2015-12-22 16:49:44 +00:00
0e01c44129 GIT: Resolved conflict 2015-12-09 16:19:28 +00:00
5c9dff6146 GIT: Resolved conflict 2015-12-09 16:19:28 +00:00
8837a89237 STYLE: Updated links from openfoam.org to openfoam.com 2015-12-09 15:03:05 +00:00
8f1d043364 GIT: Resolved conflict 2015-12-09 09:32:38 +00:00
73dac8c7ee ENH: Updating utilities based on internal development line 2015-12-02 10:17:28 +00:00
ba2f46f12a applications: Added fvOptions library to link 2015-12-01 16:09:19 +00:00
e2ef006b91 applications: Update ...ErrorIn -> ...ErrorInFunction
Avoids the clutter and maintenance effort associated with providing the
function signature string.
2015-11-10 17:53:31 +00:00