Commit Graph

94 Commits

Author SHA1 Message Date
391afe7854 STYLE: report read/write options as integers (see fb5940131e) 2019-04-24 12:28:40 +02:00
f3eaf29ed1 COMP: resolved build error due to change in commit 02598d0e36 - need to revisit 2019-04-17 11:32:25 +01:00
d14f181529 ENH: add tracking of label/scalar size when reading IOobject header
- extracts values from the arch "LSB;label=32;scalar=64" header entry
  to provision for managing dissimilar primitive sizes.

  Compensate for the additional IOobject members by narrowing the types
  for the (objectState, readOption, writeOption) enumerations
2019-04-16 12:23:01 +02:00
c2c00b121e ENH: add backslashes handling, UNC descriptors in fileName (#1008, #1238) 2019-04-16 12:18:20 +02:00
154029ddd0 BOT: Cleaned up header files 2019-02-06 12:28:23 +00:00
455c8ef540 ENH: simplify use of case-relative paths
- provide relativePath() for argList and for Time.
  These are relative to the case globalPath().
  Eg,

     Info<< "output: " << runTime.relativePath(outputFile) << nl;
2018-12-15 13:26:55 +01:00
ac03307258 ENH: improve consistency in version handling (issue #1010)
- use std::string instead of c-string for the string constants

- centralize some definitions of resources into foamVersion.H

  Now expose some of the hard-coded values used in foamEtcFiles()
  so that they can be known or even overridden as required.

  Relocate to src/OpenFOAM/include as a constant location.
2018-11-23 11:08:36 +01:00
083e9e9665 ENH: isolate version information in foamVersion names instead of globals
- For compatibility, access to the old global names is provided via
  macros
        #define FOAMversion     foamVersion::version
        #define FOAMbuild       foamVersion::build
        #define FOAMbuildArch   foamVersion::buildArch

- this isolation makes it easier to provide additional scoped methods
  for dealing with version related information.  Eg, printBuildInfo()
2018-11-22 11:50:24 +01:00
f44e59fb55 ENH: add IOobject::isHeaderClassName() method
- in parameter form, check if it headerClassName() corresponds to the
  specified class name

- in templated form, check if headerClassName() corresponds to the
  Type:typeName value.
  Specialization for <void> always returns true (ie, no checks)
2018-11-10 16:54:19 +01:00
3b74512231 ENH: cleanup of Enum class
- more dictionary-like methods, enforce keyType::LITERAL for all
  lookups to avoid any spurious keyword matching.

- new readEntry, readIfPresent methods

- The get() method replaces the now deprecate lookup() method.

- Deprecate lookupOrFailsafe()
  Failsafe behaviour is now an optional parameter for lookupOrDefault,
  which makes it easier to tailor behaviour at runtime.

- output of the names is now always flatted without line-breaks.
  Thus,

     os << flatOutput(someEnumNames.names()) << nl;
     os << someEnumNames << nl;

  both generate the same output.

- Constructor now uses C-string (const char*) directly instead of
  Foam::word in its initializer_list.

- Remove special enum + initializer_list constructor form since
  it can create unbounded lookup indices.

- Removd old hasEnum, hasName forms that were provided during initial
  transition from NamedEnum.

- Added static_assert on Enum contents to restrict to enum or
  integral values.  Should not likely be using this class to enumerate
  other things since it internally uses an 'int' for its values.

  Changed volumeType accordingly to enumerate on its type (enum),
  not the class itself.
2018-10-18 12:57:32 +02:00
88e5334a9f ENH: IOobject::selectIO helper method
- centralizes IOobject handling and treatment of alternative locations.
  If an alternative file location is specified, it will be used instead.

- provide decompositionMethod::canonicalName instead of using
  "decomposeParDict" in various places.
2018-08-02 17:39:17 +02:00
f00c7a655c COMP: rename dictionary::read<T> to dictionary::readEntry<T>
- avoids compiler ambiguity when virtual methods such as
  IOdictionary::read() exist.

- the method was introduced in 1806, and was thus not yet widely used
2018-07-30 15:52:40 +02:00
4cf932b230 STYLE: reorder/refactor stream format options
- IOstreamOption class to encapsulate format, compression, version.
  This is ordered to avoid internal padding in the structure, which
  reduces several bytes of memory overhead for stream objects
  and other things using this combination of data.

  Byte-sizes:
      old  IOstream:48  PstreamBuffers:88  Time:928
      new  IOstream:24  PstreamBuffers:72  Time:904

====

STYLE: remove support for deprecated uncompressed/compressed selectors

In older versions, the system/controlDict used these types of
specifications:

    writeCompression uncompressed;
    writeCompression compressed;

As of DEC-2009, these were deprecated in favour of using normal switch
names:

    writeCompression true;
    writeCompression false;
    writeCompression on;
    writeCompression off;

Now removed these deprecated names and treat like any other unknown
input and issue a warning. Eg,

   Unknown compression specifier 'compressed', assuming no compression

====

STYLE: provide Enum of stream format names (ascii, binary)

====

COMP: fixed incorrect IFstream construct in FIREMeshReader

- spurious bool argument (presumably meant as uncompressed) was being
  implicitly converted to a versionNumber. Now caught by making
  IOstreamOption::versionNumber constructor explicit.

- bad version specifier in changeDictionary
2018-04-12 20:32:20 +02:00
57291e8692 STYLE: use autoPtr::New and tmp::New for simple return types 2018-02-26 14:00:30 +01:00
0adf8d0a7e STYLE: use word methods to obtain IOobject member/group 2017-10-23 09:56:34 +02:00
d8d6030ab6 INT: Integration of Mattijs' collocated parallel IO additions
Original commit message:
------------------------

Parallel IO: New collated file format

When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor.  Processor directories are named 'processorN',
where N is the processor number.

This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor.  The files are stored in a single
directory named 'processors'.

The new format produces significantly fewer files - one per field, instead of N
per field.  For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.

The file writing can be threaded allowing the simulation to continue running
while the data is being written to file.  NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".

The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:

OptimisationSwitches
{
    ...

    //- Parallel IO file handler
    //  uncollated (default), collated or masterUncollated
    fileHandler uncollated;

    //- collated: thread buffer size for queued file writes.
    //  If set to 0 or not sufficient for the file size threading is not used.
    //  Default: 2e9
    maxThreadFileBufferSize 2e9;

    //- masterUncollated: non-blocking buffer size.
    //  If the file exceeds this buffer size scheduled transfer is used.
    //  Default: 2e9
    maxMasterFileBufferSize 2e9;
}

When using the collated file handling, memory is allocated for the data in the
thread.  maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated.  If the data exceeds this size, the write does not use threading.

When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer.  If the
data exceeds this size, the system uses scheduled communication.

The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters.  Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.

A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
    mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated

An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling

The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
2017-07-07 11:39:56 +01:00
e70fc61660 ENH: consolidate, cleanup some string methods
- consolidate word::validated() into word::validate() and also allow
  as short form for string::validate<word>(). Also less confusing than
  having similarly named methods that essentially do the same thing.

- more consistent const access when iterating over strings

- add valid(char) for keyType and wordRe
2017-08-02 12:33:35 +02:00
797155f862 ENH: additional method for switching error throwing on/off (issue #552)
- error::throwExceptions(bool) returning the previous state makes it
  easier to set and restore states.

- throwing() method to query the current handling (if required).

- the normal error::throwExceptions() and error::dontThrowExceptions()
  also return the previous state, to make it easier to restore later.
2017-07-29 12:25:30 +02:00
2c69b7d7c4 STYLE: adjust some line lengths, doxygen comments 2017-07-20 13:50:35 +02:00
922ea5667e BUG: IOobject interpretation of ./ in construct-from-fileName (closes #482)
- Resolve ambiguity by using the following rules:

  1) starts with '/'  =>  absolute file-system path
  2) starts with './' or '../'  =>  file-system path relative to CWD
  3) otherwise treat as relative to the case

STYLE: allow write access to headerClassName
2017-07-19 12:09:43 +02:00
aa969ec157 BUG: IOobject: interpretation of ./ in construct-from-fileName. Fixes #482. 2017-07-13 14:47:20 +01:00
162e9126f3 STYLE: adjust internal coding for handing IOobject filename (related to #482)
- make the purpose of various parts clearer
2017-07-06 11:34:35 +02:00
f55c568f13 ENH: upgrade from NamedEnum to Enum (issue #515) 2017-07-03 21:43:33 +02:00
7ac55ac74a ENH: consolidate arch and version strings (issue #513)
- make some IOobject writing routines non-templated.

- relocate more IOobject methods into the IOobjectI.H
  (generally cleanup the main header).
2017-07-03 13:24:08 +02:00
c2b0531081 ENH: only report the architecture information for binary output files
- not required for ASCII, and makes normal dictionaries too noisy.

STYLE: move archHint to be a file-scope static
2016-12-19 00:24:54 +01:00
7acef189cf ENH: provide machine/OpenFOAM architecture hint in output files (issue #271)
FoamFile
  {
      version     2.0;
      format      binary;
      arch        "LSB;label=32;scalar=64";
      class       vectorField;
      object      points;
  }

There is otherwise no simple indication in any of the files as to the
sizes used (Int32 vs Int64, SP vs DP). This makes it difficult for the
end-user and also for any third-party consumers.

--
The architecture information contains three items in the following format:

    (LSB|MSB);label=(32|64);scalar=(32|64)

- The endian value always appears first, without any leading space.
  This make it trivial to check later. Either the first 3 letters (LSB
  vs MSB) or even just the first letter ('L' vs 'M').

- Subsequent key=value pairs for 'label' and 'scalar' are separated
  by semicolons. The ordering of label vs scalar is not specified.

Note that this 'arch' information is purely informational.
It is currently not used by the OpenFOAM input mechanism itself.
2016-12-18 01:43:58 +01:00
784461b2fa ENH: make search of instances in IOobject::typeHeaderOk optional (issue #245)
- in specific cases it can be useful to suppress searching the instances.
  For example, if one only wishes to check if a "points" is available at
  the given time instance, without searching backwards through all
  times.
2016-11-21 14:28:40 +01:00
8ba4e3c370 ENH: make search of time instances in IOobject optional (issue #245)
- Still needs more attention.

--
STYLE: fix minor typos in documentation
2016-11-20 14:41:43 +01:00
78964897ce BUG: readFields function object - corrected reading of fields from file. Fixes #289 2016-11-04 12:28:28 +00:00
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
58f905ff70 C++11: Replaced the C NULL with the safer C++11 nullptr
Requires gcc version 4.7 or higher
2016-08-05 17:19:38 +01:00
1319df48d9 Rationalized Doxygen documentation of command-line options 2016-06-17 09:11:58 +01:00
fd9d801e2d GIT: Initial commit after latest foundation merge 2016-04-25 11:40:48 +01:00
ffa7dc7d6b ENH: IOWarningIn: use new ..InFunction macros 2016-03-09 14:36:25 +00:00
9e3ce4ec7f Merge branch 'master' of develop.openfoam.com:Development/OpenFOAM-plus into feature-shared-file
Conflicts:
	applications/utilities/mesh/advanced/refinementLevel/refinementLevel.C
	applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C
	applications/utilities/miscellaneous/foamHelp/helpTypes/helpBoundary/helpBoundary.C
	applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3FoamUpdateInfo.C
	applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/vtkPV4Foam/vtkPV4FoamUpdateInfo.C
	applications/utilities/postProcessing/turbulence/createTurbulenceFields/createTurbulenceFields.C
	applications/utilities/postProcessing/velocityField/Co/Co.C
	applications/utilities/postProcessing/velocityField/Pe/Pe.C
	applications/utilities/preProcessing/applyBoundaryLayer/applyBoundaryLayer.C
	applications/utilities/preProcessing/changeDictionary/changeDictionary.C
	applications/utilities/preProcessing/setFields/setFields.C
	applications/utilities/surface/surfaceMeshConvert/surfaceMeshConvert.C
	applications/utilities/surface/surfaceMeshExport/surfaceMeshExport.C
	applications/utilities/surface/surfaceMeshImport/surfaceMeshImport.C
	applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C
	src/OpenFOAM/db/IOobject/IOobject.C
	src/OpenFOAM/db/IOobjects/CompactIOList/CompactIOList.C
	src/OpenFOAM/db/IOobjects/IOField/IOField.C
	src/OpenFOAM/db/IOobjects/IOList/IOList.C
	src/OpenFOAM/db/IOobjects/IOPtrList/IOPtrList.C
	src/OpenFOAM/db/IOobjects/IOdictionary/IOdictionary.C
	src/OpenFOAM/db/Time/findInstance.C
	src/OpenFOAM/db/regIOobject/regIOobject.C
	src/OpenFOAM/db/regIOobject/regIOobjectI.H
	src/OpenFOAM/db/regIOobject/regIOobjectRead.C
	src/OpenFOAM/db/regIOobject/regIOobjectWrite.C
	src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/IOmapDistribute.C
	src/OpenFOAM/meshes/polyMesh/polyBoundaryMesh/polyBoundaryMesh.C
	src/OpenFOAM/meshes/polyMesh/zones/ZoneMesh/ZoneMesh.C
	src/dynamicMesh/fvMeshDistribute/IOmapDistributePolyMesh.C
	src/dynamicMesh/motionSolver/componentDisplacement/componentDisplacementMotionSolver.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/hexRef8Data.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/refinementHistory.C
	src/dynamicMesh/polyTopoChange/polyTopoChanger/polyTopoChanger.C
	src/edgeMesh/edgeMeshFormats/edgeMesh/edgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedEdgeMeshFormats/extendedEdgeMeshFormat/extendedEdgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedFeatureEdgeMesh/extendedFeatureEdgeMesh.C
	src/fvMotionSolver/fvMotionSolvers/displacement/interpolation/displacementInterpolationMotionSolver.C
	src/fvMotionSolver/pointPatchFields/derived/uniformInterpolatedDisplacement/uniformInterpolatedDisplacementPointPatchVectorField.C
	src/lagrangian/basic/Cloud/CloudIO.C
	src/meshTools/sets/cellSources/fieldToCell/fieldToCell.C
	src/postProcessing/foamCalcFunctions/basic/addSubtract/addSubtract.C
	src/postProcessing/functionObjects/field/fieldCoordinateSystemTransform/fieldCoordinateSystemTransformTemplates.C
	src/postProcessing/functionObjects/field/readFields/readFieldsTemplates.C
	src/thermophysicalModels/radiation/radiationModels/fvDOM/radiativeIntensityRay/radiativeIntensityRay.C
	src/triSurface/triSurface/surfacePatch/surfacePatchIOList.C
2016-01-25 16:29:04 +00:00
e424059208 ENH: glboal file handling: initial commit
Moved file path handling to regIOobject and made it type specific so
now every object can have its own rules. Examples:
- faceZones are now processor local (and don't search up anymore)
- timeStampMaster is now no longer hardcoded inside IOdictionary
  (e.g. uniformDimensionedFields support it as well)
- the distributedTriSurfaceMesh is properly processor-local; no need
  for fileModificationChecking manipulation.
2016-01-25 13:03:15 +00:00
1bd1a49306 Updated header 2016-01-19 21:58:32 +00:00
5728c1f173 Info -> InfoInFunction 2016-01-19 21:58:11 +00:00
0e01c44129 GIT: Resolved conflict 2015-12-09 16:19:28 +00:00
8837a89237 STYLE: Updated links from openfoam.org to openfoam.com 2015-12-09 15:03:05 +00:00
3f55f752fc GIT: Resolve conflict with upstream merge from Foundation 2015-12-07 17:07:20 +00:00
dc43311e62 src/OpenFOAM: Update ...IOErrorIn -> ...IOErrorInFunction
Avoids the clutter and maintenance effort associated with providing the
function signature string.
2015-11-10 21:13:04 +00:00
a4ab3f61db src/OpenFOAM: Update ...ErrorIn -> ...ErrorInFunction
Avoids the clutter and maintenance effort associated with providing the
function signature string.
2015-11-08 12:23:52 +00:00
40a8318b1a ENH: IOobject: construct as copy with different name 2015-10-13 16:06:04 +01:00
94401af010 Resolved issues with virtual function inheritance and warning from clang
Also removed __GNUC__ conditional compilation statements which are no
longer needed.
2015-07-17 12:11:37 +01:00
28f58cb679 IOobject: Added member function "member()" which returns the member name of the object
i.e. without the group suffix.

Patch provided by William Bainbridge
2015-06-04 17:09:42 +01:00
02d1f5d6f0 BUG: mantis #1404: Typos 2014-10-15 10:51:11 +01:00
7cfb5e5dbb IOobject: corrected fileNameComponents - mantis #1009 2013-09-18 13:12:39 +01:00
0752591f4a ENH: Time: fast time comparison 2013-09-09 15:36:51 +01:00
4428aeed15 IOobject: Add support for group name
.group() returns the group name of the object otherwise null
groupName(name, group) returns the constructed group name (currently name.group)
2013-07-14 23:14:08 +01:00