Commit Graph

7381 Commits

Author SHA1 Message Date
0fabbcb404 ENH: direct ensight output of float/double
- since ensight format is always float and also always written
  component-wise, perform the double -> float narrowing when
  extracting the components.  This reduces the amount of data
  transferred between processors.

ENH: avoid vtk/ensight parallel communication of empty messages

- since ensight writes by element type (eg, tet, hex, polyhedral) the
  individual written field sections will tend to be relatively sparse.
  Skip zero-size messages, which should help reduce some of the
  synchronization bottlenecks.

ENH: use 'data chunking' when writing ensight files in parallel

- since ensight fields are written on a per-element basis, the
  corresponding segment can become rather sparsely distributed. With
  'data chunking', we attempt to get as many send/recv messages in
  before flushing the buffer for writing. This should make the
  sequential send/recv less affected by the IO time.

ENH: allow use of an external buffer when writing ensight components

STYLE: remove last vestiges of autoPtr<ensightFile> for output routines
2022-11-15 17:26:09 +01:00
5338e56c73 ENH: add support for OFstream atomic file creation (#2631)
- with ATOMIC, an intermediary file is created - eg, (fileAbc~tmp~)
  where all of the output is written to. When the stream goes out of
  scope, this intermediary file is moved/renamed to the actually
  output name - eg, (fileAbc~tmp~) -> (fileAbc).

  This adds some safety if the simulation crashes while writing the
  file, since it will the partial (corrupt) file will be left
  behind as (fileAbc~tmp~) and not as (fileAbc), which means it will
  will be treated as a backup file and not loaded again on restart.

ENH: provided enumeration for APPEND/NON_APPEND

- clearer than using bool (with comments).
  Since append mode is primarily only used by masterOFstream etc
  this change is unlikely to affect user coding.

ENH: use file atomic for ensight file creation

- avoids corrupt (truncated) files being referenced by the ensight
  case file if the simulation crashes while writing the ensight file.
2022-11-15 14:10:01 +01:00
9f7cfa9419 ENH: support libz disabling via WM_COMPILE_CONTROL (as ~libz)
- eg, for partially incomplete systems (without libz devel header)

ENH: clearer binding of dummy Pstream in OpenFOAM/Make/options

- link of dummy stub Pstream now contingent on linking libOpenFOAM as
  well. This makes the purpose slightly clearer

ENH: cleaner option naming/handling in wmake script

- allow special purpose -no-openfoam option.
  Eg, compiling test programs without OpenFOAM and Pstream libraries
  but using the rest of the wmake system.

ENH: add +openmp support into WM_COMPILE_CONTROL (#2633)

- this adds compile/link flags for openmp.
  For single-use, can also use 'wmake -openmp'.

  If both +openmp and ~openmp are specified in WM_COMPILE_CONTROL
  the ~openmp will have priority.

  This is actually done indirectly since ~openmp will set empty
  COMP_OPENMP, LINK_OPENMP internal variables, which the +openmp then
  adds to the c++FLAGS and linkexe targets (ie, won't actually add
  anything).

ENH: add +ccache or ccache=... support into WM_COMPILE_CONTROL (#2633)

- with the first version (+ccache), simply use ccache from the path
  without any extra options.

- with the second version (ccache=...), can be more specific about
  what is called.

  Using "+ccache" is identical to "ccache=ccache", but the later could
  be used in other ways. For example,

     ccache=/strange/install/path/ccache
     ccache=</path/my-tooling --option>

  Have the choice of unquoted, single or double quoted or '< >' quoted

STYLE: relocate FOAM_EXTRA_LDFLAGS in general makefile

- removes clutter for different linkers (eg, gold, mold, ldd)
  making it easier to extend for other linkers.

STYLE: protect makefile checks with 'strip' function
2022-11-15 14:00:18 +01:00
25e874a4f0 ENH: provide MPI native minOp, maxOp reduce multiple values
- consistent with sumOp

ENH: globalIndex with gatherNonLocal tag, and use leading dispatch tags

- useful for gather/write where the master data can be written
 separately.  Leading vs trailing dispatch tags for more similarity to
 other C++ conventions.
2022-11-15 14:00:18 +01:00
2a406bbb25 ENH: overset: various improvements in the framework
The improvements include:

- Allowing overset patches to be displaced outside background domain.
  - The approach does not support overlapping of multiple inset meshes
    on top of background domain.
- Allowing fringe faces to walk away from hole cells in background domain.
  - The approach was not extensibly tested with overlapping patches.
- Improving mass conservation.
- Various experimental entries are removed: massFluxInterpolation, ddtCorr.
- New entries:
  - oversetAdjustPhi: adds a flux correction outside the pressure equation.
  - massCorrection: adds an implicit correction.
2022-11-11 10:19:47 +00:00
5b29ff0e42 ENH: consolidate 'formatOptions' handling for coordSetWriter/surfaceWriter
- replaced ad hoc handling of formatOptions with coordSetWriter and
  surfaceWriter helpers.

  Accompanying this change, it is now possible to specify "default"
  settings to be inherited, format-specific settings and have a
  similar layering with surface-specific overrides.

- snappyHexMesh now conforms to setFormats

  Eg,

      formatOptions
      {
          default
          {
              verbose     true;
              format      binary;
          }
          vtk
          {
              precision   10;
          }
     }

     surfaces
     {
         surf1
         {
             ...

             formatOptions
             {
                 ensight
                 {
                     scale   1000;
                 }
             }
         }
     }
2022-11-08 16:48:08 +00:00
799d247142 ENH: PatchTools::gatherAndMerge with recovery of the globalIndex
- support globalIndex for points/faces as an output parameter,
  which allows reuse in subsequent field merge operations.

- make pointMergeMap an optional parameter. This information is not
  always required. Eg, if only using gatherAndMerge to combine faces
  but without any point fields.

ENH: make globalIndex() noexcept, add globalIndex::clear() method
2022-11-08 16:48:08 +00:00
70208a7399 ENH: use returnReduceAnd(), returnReduceOr() functions
DOC: document which MPI send/recv are associated with commType
2022-11-08 16:48:08 +00:00
473e14418a ENH: more consistent use of broadcast, combineReduce etc.
- broadcast           : (replaces scatter)
  - combineReduce       == combineGather + broadcast
  - listCombineReduce   == listCombineGather + broadcast
  - mapCombineReduce    == mapCombineGather + broadcast
  - allGatherList       == gatherList + scatterList

  Before settling on a more consistent naming convention,
  some intermediate namings were used in OpenFOAM-v2206:

    - combineReduce       (2206: combineAllGather)
    - listCombineReduce   (2206: listCombineAllGather)
    - mapCombineReduce    (2206: mapCombineAllGather)
2022-11-08 16:48:08 +00:00
b9c15b8585 COMP: missing linkage for ensightToFoam (ldd linker) 2022-11-08 17:13:46 +01:00
5163e52974 ENH: ensightToFoam: Ensight Gold mesh converter 2022-11-07 21:22:18 +00:00
2202995f5c ENH: expose IntRange {begin,end}_value() methods
- end_value() corresponds to the infrequently used after() method, but
  with naming that corresponds better to iterator naming conventions.

  Eg,

     List<Type> list = ...;
     labelRange range = ...;

     std::transform
     (
         (list.data() + range.begin_value()),
         (list.data() + range.end_value()),

         outIter,
         op
     );

- promote min()/max() methods from labelRange to IntRange base class

STYLE: change timeSelector from "is-a" to "has-a" scalarRanges.
2022-10-31 18:36:15 +01:00
21f037e3a0 ENH: single/double value reset method for MinMax
- resets min/max to be identical to the specified value,
  which can be more convenient (and slightly more efficient) than doing
  a full reset followed by add()

- additional MinMax intersects() query, which works like overlaps()
  but with exclusive checks at the ends

- provide MinMax::operator&=() to replace (unused) intersect() method

ENH: single/double value reset method for boundBox

- boundBox::operator&=() to replace (rarely used) intersect() method.
  Deprecate boundBox::intersect() to avoid confusion with various
  intersects() method

COMP: provide triangleFwd.H
2022-10-31 18:36:14 +01:00
c973066646 ENH: supplementary vector comparison methods
- background: for some application it can be useful to have fully
  sorted points. i.e., sorted by x, followed by y, followed by z.

  The default VectorSpace 'operator<' compares *all*
  components. This is seen by the following comparisons

  1.  a = (-2.2 -3.3 -4.4)
      b = (-1.1 -2.2 3.3)

      (a < b) : True
      Each 'a' component is less than each 'b' component

  2.  a = (-2.2 -3.3 -4.4)
      b = (-2.2 3.3 4.4)

      (a < b) : False
      The a.x() is not less than b.x()

  The static definitions 'less_xyz', 'less_yzx', 'less_zxy'
  instead use comparison of the next components as tie breakers
  (like a lexicographic sort).
  - same type of definition that Pair and Tuple2 use.

      a = (-2.2 -3.3 -4.4)
      b = (-2.2 3.3 4.4)

      vector::less_xyz(a, b) : True
      The a.x() == b.x(), but a.y() < b.y()

   They can be used directly as comparators:

      pointField points = ...;

      std::sort(points.begin(), points.end(), vector::less_zxy);

ENH: make VectorSpace named access methods noexcept.

   Since the addressing range is restricted to enumerated offsets
   (eg, X/Y/Z) into storage, always remains in-range.
   Possible to make constexpr with future C++ versions.

STYLE: VectorSpace 'operator>' defined using 'operator<'

- standard rewriting rule
2022-10-31 18:36:14 +01:00
9433898941 ENH: support construction of pointIndexHit from pointHit
STYLE: combine templated/non-templated headers (reduced clutter)

STYLE: use hitPoint(const point&) combined setter

- same as setHit() + setPoint(const point&)

ENH: expose and use labelOctBits::pack method for addressing
2022-10-31 18:36:14 +01:00
9db3547bd3 ENH: support optional average value when reading rawIOField
ENH: simplify bookkeeping within MappedFile
2022-10-31 18:36:14 +01:00
b145e59049 STYLE: viewFactorsGen with std::vector (reserve) instead of std::list 2022-10-26 18:04:56 +02:00
24ffc5236d COMP: simplify openmp handling (#2617)
- remove old, unneeded -DUSE_OMP define.
- wmake -no-openmp option to add '~openmp' to WM_COMPILE_CONTROL

ENH: add bash completion handling for wmake
2022-10-26 18:04:56 +02:00
65dc440f3c COMP: silence clang -Wbitwise-instead-of-logical (triggered by boost/cgal) 2022-10-12 19:44:01 +02:00
4585a2d229 COMP: fix bad constructor resolution
STYLE: simpler initialization
2022-10-12 19:32:56 +02:00
18eeba116a ENH: use boundBox building blocks in misc places 2022-10-12 13:19:48 +02:00
61deacd24d ENH: boundBox improvements (#2609)
- construct boundBox from Pair<point> of min/max limits,
  make sortable

- additional bounding box intersections (linePointRef), add noexcept

- templated access for boundBox hex-corners
  (used to avoid temporary point field).
  Eg, unrolled plane/bound-box intersection with early exit

- bounding box grow() to expand box by absolute amounts
  Eg,

      bb.grow(ROOTVSMALL);   // Or: bb.grow(point::uniform(ROOTVSMALL));
  vs
      bb.min() -= point::uniform(ROOTVSMALL);
      bb.max() += point::uniform(ROOTVSMALL);

- treeBoundBox bounding box extend with two or three parameters.
  The three parameter version includes grow(...) for reduced writing.
  Eg,

      bb = bb.extend(rndGen, 1e-4, ROOTVSMALL);

  vs
      bb = bb.extend(rndGen, 1e-4);
      bb.min() -= point::uniform(ROOTVSMALL);
      bb.max() += point::uniform(ROOTVSMALL);

  This also permits use as const variables or parameter passing.
  Eg,

      const treeBoundBox bb
      (
          treeBoundBox(some_points).extend(rndGen, 1e-4, ROOTVSMALL)
      );
2022-10-12 13:19:44 +02:00
81b1c5021f ENH: provide low-level bound box() methods for meshShapes
- box method on meshShapes (cell,edge,face,triangle,...)
  returns a Pair<point>.

  Can be used directly without dependency on boundBox,
  but the limits can also passed through to boundBox.

- Direct box calculation for cell, which walks the cell-faces and
  mesh-faces.  Direct calculation for face (#2609)
2022-10-12 12:54:39 +02:00
d5cdc60a54 BUG: processorMeshes removeFiles does not remove collated (fixes #2607)
ENH: extend rmDir to handle removal of empty directories only

- recursively remove directories that only contain other directories
  but no other contents. Treats dead links as non-content.
2022-10-11 17:58:22 +02:00
779a2ca084 ENH: adjust fileName methods for similarity to std::filesystem::path
- stem(), replace_name(), replace_ext(), remove_ext() etc

- string::contains() method - similar to C++23 method

  Eg,
      if (keyword.contains('/')) ...
  vs
      if (keyword.find('/') != std::string::npos) ...
2022-10-11 17:58:22 +02:00
0c89f38312 ENH: additional DimensionedField, GeometricField factory methods
- construct based on db and mesh information from an existing field

- check movable() instead of isTmp() when reusing fields

STYLE: isolate check for reuse GeometricField into Detail namespace
2022-10-06 12:54:06 +02:00
7b2bcfda0b ENH: improved handling of coordinateSystems
- in continuation of #2565 (rotationCentre for surface output formats)
  it is helpful to also support READ_IF_PRESENT behaviour for the
  'origin' keyword.

  This can be safely used wherever the coordinate system definition
  is embedded within a sub-dictionary scope.

  Eg,
      dict1
      {
          coordinateSystem
          {
              origin (0 0 0);  // now optional here
              rotation ...;
          }
      }

   but remains mandatory if constructed without a sub-dict:

      dict2
      {
          origin (0 0 0);   // still mandatory
          e1  (1 0 0);
          e3  (0 0 1);
      }

   With this change, the "transform" sub-dictionary can written
   more naturally:

       formatOptions
       {
           vtk
           {
               scale 1000;  // m -> mm
               transform
               {
                   rotationCentre  (1 0 0);
                   rotation axisAngle;
                   axis    (0 0 1);
                   angle   -45;
               }
           }
       }

ENH: simplify handling of "coordinateSystem" dictionary lookups

- coordinateSystems::NewIfPresent method for optional entries:

    coordSysPtr_ = coordinateSystem::NewIfPresent(mesh, dict);

  Instead of

    if (dict.found(coordinateSystem::typeName, keyType::LITERAL))
    {
        coordSysPtr_ =
            coordinateSystem::New
            (
                mesh_,
                dict,
                coordinateSystem::typeName
            );
    }
    else
    {
        coordSysPtr_.reset();
    }

ENH: more consistent handling of priorities for binModels, forces (#2598)

- if the dictionaries are overspecified, give a 'coordinateSystem'
  entry a higher prioriy than the 'CofR' shortcuts.

  Was previously slightly inconsistent between the different models.
2022-10-04 15:51:27 +02:00
d938e01d7a ENH: refactor IOobject options
- IOobjectOption class encapsulates read/write, storage flags for
  lightweight handling, independent of objectRegistry etc.

ENH: add IOobject isReadRequired() and isReadOptional() queries

- encapsulates test of MUST_READ, MUST_READ_IF_MODIFIED,
  READ_IF_PRESENT for convenience / less clutter.

Example,

    if (isReadRequired() || (isReadOptional() && headerOk()))
    {
        ...
    }

Instead of

    if
    (
        (
            readOpt() == IOobject::MUST_READ
         || readOpt() == IOobject::MUST_READ_IF_MODIFIED
        )
     || (readOpt() == IOobject::READ_IF_PRESENT && headerOk())
    )
    {
        ...
    }
2022-10-04 15:51:26 +02:00
623c0624fb ENH: simplify stream construction
- with IOstreamOption there are no cases where we need to construct
  top-level streams (eg, IFstream, OFstream) with additional information
  about the internal IOstream 'version' (eg, version: 2.0).

  Makes it more convenient to open files with a specified
  format/compression combination - no clutter of specifying the
  version
2022-10-04 15:51:26 +02:00
55f5f8774b ENH: use dictionary findDict() instead of isDict() + subDict()
- avoids redundant dictionary searching

STYLE: remove dictionary lookupOrDefaultCompat wrapper

- deprecated and replaced by getOrDefaultCompat (2019-05).
  The function is usually specific to internal keyword upgrading
  (version compatibility) and unlikely to exist in any user code.
2022-10-04 15:51:26 +02:00
9d5a3a5c54 STYLE: remove duplicate dimensionSet dictionary read constructor
STYLE: make dimensionedTypes access inline noexcept
2022-10-04 15:51:26 +02:00
ee9119f436 ENH: rationalize expression string reading
- read construct from dictionary.
  Calling syntax similar to dimensionedType, dimensionedSet,...

  Replaces the older getEntry(), getOptional() static methods

- support readIfPresent
2022-10-04 15:51:26 +02:00
ea51c2c0e4 STYLE: return orientedType, Switch directly instead of const reference
- noexcept on some Time methods

ENH: pass through is_oriented() method for clearer coding

- use logical and/or/xor instead of bitwise versions (clearer intent)
2022-10-04 15:51:26 +02:00
7c2311aae6 ENH: noiseModels - replaced graph usage by writeFile
Header information now includes, e.g.

    f [Hz] vs P(f) [Pa]
    Lower frequency: 2.500000e+01
    Upper frequency: 5.000000e+03
    Window model: Hanning
    Window number: 2
    Window samples: 512
    Window overlap %: 5.000000e+01
    dBRef       : 2.000000e-05
    Area average: false
    Area sum    : 6.475194e-04
    Number of faces: 473

Note: output files now have .dat extension
2022-10-04 13:10:39 +00:00
c59b6db3c4 ENH: viewFactorsGen: re-enable 2D. See #2560
This reverts the v2206 behaviour so does not include
the edge-integration (2LI) optimisation - it uses
the exact same code as v2206.
2022-10-03 16:54:58 +01:00
5677e10d90 ENH: checkMesh: report overlapping zones. See #2521 2022-10-03 11:41:42 +01:00
a7ef33da6b ENH: add finite-area support to setFields (#2591)
- for example,

    defaultFieldValues
    (
        areaScalarFieldValue h 0.00014
    );

    regions
    (
        clipPlaneToFace
        {
            point  (0 0 0);
            normal (1 0 0);

            fieldValues
            (
                areaScalarFieldValue h 0.00015
            );
        }
    );

ENH: additional clipPlaneTo{Cell,Face,Point} topo sets

- less cumbersome than defining a semi-infinite bounding box
2022-09-26 18:03:23 +02:00
56e9f7bf4b BUG: blockMesh mergePatchPairs fails with edge-shared points (fixes #2589)
- remedy by performing the attach() action sequentially (as per
  stitchMesh changes). This ensures that the current point addressing
  is always used and avoids references to the already-merged points
  (which is what causes the failure).

ENH: improve handling of empty patch removal

- only remove empty *merged* patches, but leave any other empty
  patches untouched since they may intentional placeholders for other
  parts of a workflow.

- remove any empty point/face zones created for patch merging
2022-09-26 18:03:23 +02:00
5130c7bcbc STYLE: use polyPatchList instead of List<polyPatch*> in more places 2022-09-26 18:03:23 +02:00
84db37f62f ENH: improved bookkeeping for finite-area to volume mesh correspondence
- whichPolyPatches() = the polyPatches related to the areaMesh.

  This helps when pre-calculating (and caching) any patch-specific
  content.

- whichPatchFaces() = the poly-patch/patch-face for each of the faceLabels.

  This allows more convenient lookups and, since the list is cached on
  the area mesh, reduces the number of calls to whichPatch() etc.

- whichFace() = the area-face corresponding to the given mesh-face

ENH: more flexible/consistent volume->area mapper functions
2022-09-22 16:09:14 +02:00
88061f3b28 ENH: improved argList handling of libs, functionObjects
- include -no-libs option by default, similar to '-lib',
  which makes it available to all solvers/utilities.
  Add argList allowLibs() method to query it.

- relocate with/no functionObjects logic from Time to argList
  itself as argList allowFunctionObjects()

- add libs/functionObjects override handling to decomposePar etc

ENH: report the stream relativeName for IOerrors (see c9333a5ac8)
2022-09-22 16:08:52 +02:00
c031f7d00a ENH: improve autoPtr/refPtr/tmp consistency (#2571)
- disallow inadvertant casting and hidden copy constructions etc
2022-09-22 11:50:51 +02:00
052d8b13e3 ENH: support tuple (pair) indexing into FieldField
- can use a (patchi, elemi) pair to access an element of a FieldField
2022-09-22 11:50:51 +02:00
a0282c7e41 ENH: prefer PtrList set/get/test instead of PtrList::operator() access
- clearer coding intent. Mark operator() as 'deprecated'

- add bounds checking to get(label) and set(label) methods.

  This gives failsafe behaviour for get() that is symmetric with
  HashPtrTable, autoPtr etc and aligns the set(label) methods
  for UPtrList, PtrList and PtrDynList.

- use top-level PtrList::clone() instead of cloning individual elements

ENH: support HashPtrTable set with refPtr/tmp (flexibility)
2022-09-22 11:50:51 +02:00
b9ca63b118 ENH: use pointer checks for dynamicCast, refCast
- avoids try/catch exception handling

STYLE: prefer refCast (shorter) to dynamicCast where possible
2022-09-22 11:50:51 +02:00
968c1db1af ENH: use combined &=, |=, ^= forms for bitAndEqOp, bitOrEqOp, bitXorEqOp
- these also work for bitSet, HashSet with slightly lower overhead

ENH: locate FOAM_NODISCARD attribute macro in stdFoam.H
2022-09-22 11:50:50 +02:00
47e172e6ef ENH: add internal parRun guards to some UPstream methods
- simplifies coding
  * finishedRequest(), waitRequest(), waitRequests() with parRun guards
  * nRequests() is noexcept

- more consistent use of UPstream::defaultCommsType in branching
2022-09-22 11:50:50 +02:00
716d330547 COMP: link finiteArea whenever regionFaModel is used 2022-09-22 11:50:50 +02:00
6f764c8d02 ENH: checkMesh: check patches across processors 2022-09-22 09:24:01 +01:00
a964c364b6 ENH: viewFactorsGen: stabilise calculation. Fixes #2583 2022-09-14 13:26:05 +01:00