Commit Graph

830 Commits

Author SHA1 Message Date
4ff010d094 ENH: add point snapping to iso-surface topo algorithm (#2210)
- helps avoid the creation of small face cuts (near corners, edges)
  that result in zero-size faces on output.

CONFIG: make default iso-surface topo regularisation less aggressive

- The full (diagcell) regularisation no longer includes cleaning of
  non-manifold surfaces by removing open edges.
  This can be selected by the 'clean' regularisation option instead.
  ie, 'clean' = 'full' + erode open edges

ENH: additional debug modes for iso-surface topo

- with (debug & 8) dumps out a VTK file of the tets to be cut and the
  calculated open edges.
2021-09-27 16:23:58 +02:00
134aaee91a ENH: relocated tetBasePtIs adjustment from sampling to polyMeshTetDecomposition 2021-09-22 13:32:31 +02:00
eb7d0f0ef0 COMP: add missing includes for runtime-selection 2021-07-28 10:02:27 +02:00
e3796745ed CONFIG: Updated headers to v2106
Minor clean-up
2021-06-28 09:14:42 +01:00
b6e8768034 CONFIG: update compiler versions
TUT: add missing restore0Dir (finiteArea)

STYLE: doc spelling
2021-06-14 19:20:15 +02:00
ca88abba7e ENH: add proximityRegions filter to distanceSurface (#2108)
- combines region-based and proximity-based filtering

  proxityRegions (post-filter):
    Checks the distance of the resulting faces against the original
    search surface. Filters based on the area-weighted distance
    of each topologically connected region.
    If the area-weighted distance of a region is greater than
    \c absProximity, the entire region is rejected.

STYLE: 'proxityFaces' as newer synonym for 'proximity' filter
2021-06-10 18:21:04 +02:00
0ba43df9c5 STYLE: remove erroneous reference in dynamicCast use 2021-05-31 09:11:49 +02:00
2a438385a3 STYLE: make polyMesh constructor explicit
- use polyMesh::defaultRegion instead of fvMesh::defaultRegion and
  others via static inheritance. (92 vs ~25 occurrences)
2021-05-12 11:24:57 +02:00
8eef91c5e2 ENH: improve edge access for face/triFace
- additional rcEdge(), rcEdges() methods for reverse order walk

- accept generic edge() method as alternative to faceEdge() for
  single edge retrieval.

- edge() method with points -> returns the vector

- reduce the number of operations in edgeDirection methods

DEFEATURE: remove longestEdge global function

- deprecated and replaced by face::longestEdge() method (2017-04)
2021-05-12 11:24:57 +02:00
95cd8ee75c ENH: improve hashing overloads of string-types and HashTable/HashSet
- additional dummy template parameter to assist with supporting
  derived classes. Currently just used for string types, but can be
  extended.

- provide hash specialization for various integer types.
  Removes the need for any forwarding.

- change default hasher for HashSet/HashTable from 'string::hash'
  to `Hash<Key>`. This avoids questionable hashing calls and/or
  avoids compiler resolution problems.

  For example,
  HashSet<label>::hasher and labelHashSet::hasher now both properly
  map to Hash<label> whereas previously HashSet<label> would have
  persistently mapped to string::hash, which was incorrect.

- standardize internal hashing functors.

  Functor name is 'hasher', as per STL set/map and the OpenFOAM
  HashSet/HashTable definitions.

  Older code had a local templated name, which added unnecessary
  clutter and the template parameter was always defaulted.
  For example,

      Old:  `FixedList<label, 3>::Hash<>()`
      New:  `FixedList<label, 3>::hasher()`
      Unchanged:  `labelHashSet::hasher()`

  Existing `Hash<>` functor namings are still supported,
  but deprecated.

- define hasher and Hash specialization for bitSet and PackedList

- add symmetric hasher for 'face'.
  Starts with lowest vertex value and walks in the direction
  of the next lowest value. This ensures that the hash code is
  independent of face orientation and face rotation.

NB:
  - some of keys for multiphase handling (eg, phasePairKey)
    still use yet another function naming: `hash` and `symmHash`.
    This will be targeted for alignment in the future.
2021-04-19 16:33:42 +00:00
b060378dca ENH: improve consistency of fileName handling windows/non-windows (#2057)
- wrap command-line retrieval of fileName with an implicit validate.

  Instead of this:
      fileName input(args[1]);
      fileName other(args["someopt"]);

  Now use this:
      auto input = args.get<fileName>(1);
      auto other = args.get<fileName>("someopt");

  which adds a fileName::validate on the inputs

  Because of how it is implemented, it will automatically also apply
  to argList getOrDefault<fileName>, readIfPresent<fileName> etc.

- adjust fileName::validate and clean to handle backslash conversion.
  This makes it easier to ensure that path names arising from MS-Windows
  are consistently handled internally.

- dictionarySearch: now check for initial '/' directly instead of
  relying on fileName isAbsolute(), which now does more things

BREAKING: remove fileName::clean() const method

- relying on const/non-const to control the behaviour (inplace change
  or return a copy) is too fragile and the const version was
  almost never used.

  Replace:
      fileName sanitized = constPath.clean();

  With:
      fileName sanitized(constPath);
      sanitized.clean());

STYLE: test empty() instead of comparing with fileName::null
2021-04-19 16:33:42 +00:00
cdbc3e2de6 ENH: List/DynamicList appendUniq() method
- affords some code reduction.

STYLE: use HashSet insert() without found() check in more places
2021-04-19 16:33:42 +00:00
e8cf2a2c62 ENH: more consistent use of IOstreamOption
- improves interface and data consistency.
  Older signatures are still active (via the Foam_IOstream_extras
  define).

- refine internals for IOstreamOption streamFormat, versionNumber

ENH: improve data alignment for IOstream and IOobject

- fit sizeof label/scalar into unsigned char

STYLE: remove dead code
2021-03-16 08:47:59 +00:00
f8a0677a66 ENH: replace base implementation of Foam::Swap with std::swap
- eliminates a potentially invalid code branch.
  Since it essentially had the same internals as std::swap anyhow,
  make that more evident.

ENH: use std::swap for basic types

- makes it clearer that they do not rely on any special semantics
2021-02-16 14:30:36 +01:00
2954f55f6a ENH: improve surfaceFieldValue sampling and writing (#1999)
- ensure surface writing is time-step and nFields aware.
  This avoids overwriting (ignoring) previous output fields.

- allow sampled surfaces to be used for weight fields as well.
  Not sure why this restriction was still there.

- remove old compatibility reading of orientedFields.
  Last used in v1612, now removed.

- only use face sampling. For surfaceFieldValue we can only do
  something meaningful with face values.

ENH: modify interface methods for surfaceWriter

- replace direct modification of values with setter methods.
  Eg,
     old: writer.isPointData() = true;
     new: writer.isPointData(true);

  This makes it possible to add internal hooks to catch state changes.

ENH: allow post-construction change to sampledSurface interpolation

- rename interpolate() method to isPointData() for consistency with
  other classes and to indicate that it is a query.

- additional isPointData(bool) setter method to change the expected
  representation type after construction

- remove 'interpolate' restriction on isoSurfacePoint which was
  previously flagged as an error but within sampledSurfaces can use
  sampleScheme cellPoint and obtain representative samples.
  Relax this restriction since this particular iso-surface algorithm
  is slated for removal in the foreseeable future.
2021-02-16 14:30:19 +01:00
9f7a400952 GIT: remove old "removed-file" dependency stubs, version file (#1994) 2021-02-10 12:43:07 +01:00
6cdf89dced ENH: use concise forms for walking processor and cyclic boundaries 2021-02-09 17:57:49 +01:00
2f449c57ce DOC: adjust wording 2021-01-03 17:21:14 +01:00
79e353b84e RELEASE: Updated version to v2012 2020-12-23 10:01:39 +01:00
c77194e6a1 BUG: incorrect return values for interpolated sampled meshedSurface (#1956)
- only slipped in recently, as part of Development/openfoam!394
2020-12-15 21:45:55 +01:00
4c3a95c808 ENH: additional filtering for distance surface (#1950)
- adds topology-based segmentation of the surfaces generated with
  distance surfaces. This can occur when the surface terminates
  close to a thin wall gap in the mesh; resulting in a cuts that
  extend into the next region.

  The cutting algorithm does not normally distinguish between these
  types of "ragged" cuts, and legitimate ones (eg, cutting multiple
  pipes). The additional segmentation controls provide for two common
  scenarios:

  largestRegion (pre-filter):
  - The cut cells are checked for topological connectivity and the
    region with the most number of cut cells is retained.
    This handles the "ragged" edge problem.

  nearestPoints (pre-filter):
  - The cut cells split into regions, the regions closest to the
    user-defined points are retained.
    Uses maxDistance for additional control.

  proximity (post-filter):
  - Checks the resulting faces against the original search surface
    and rejects faces with a distance greater than absProximity.

ENH: restructure distance surface geometric filtering

- prefilter cells, which can be used to adjust the distance
  calculation in the far field to the real distance
  (not the normal distance).

  This can also be used to artificially sharpen the transition
  between near/far regions, if required in the future.
2020-12-11 16:44:54 +00:00
7a99866db0 ENH: unify sampling code for isoSurfaces, support multiple offsets
- support multiple offsets for cutting plane samples
  and multiple iso-values
2020-12-11 16:44:53 +00:00
8fe0d1bacd ENH: improvements for managing iso-surfaces
- generic isoSurfaceBase. Provides simpler cell-cut detection and
  various functions that can be used for iso-surfaces or when
  preparing prefiltered input for iso-surfaces.

- rudimentary runtime selection

ENH: isoSurface Cell/Topo uses the isoSurfaceBase infrastructure

- simpler cell cut detection, common routines
- ensure that tetMatcher is only called once per cell

ENH: use indirect patch during edge erosion

- lower overhead, allows backtracking (future) if needed
2020-12-11 16:44:53 +00:00
89f2cda3ab ENH: mpi: use per-application communicator. 2020-12-09 15:17:44 +00:00
56b5234fbc ENH: store concrete sampled isoSurface faces/points as member data
- was previously via inheritance, but using member data instead
  supports a more flexible internal switching of the storage. It also
  ensures that data access remains safe, even in the absence of
  an isoSurface.
2020-12-08 13:31:23 +01:00
ccde68d410 ENH: cellZones support for isoSurface cell/topo sampling variants (#1678)
- better alignment of sampling Cell/Point/Topo inputs

- make exposedPatchName optional for isoSurface, cuttingPlane. This
  was a holdover requirement from an older version of fvMeshSubset
2020-12-08 13:31:23 +01:00
9da5215786 ENH: add sampledSurface::sampleOnPoints
- loop for interpolating volume elements to face points,
  which removes duplicate code in several other places
2020-12-08 13:31:22 +01:00
2f6082712e ENH: modernize some code constructs in isoSurface
- add debug field to isoSurfaceTopo
- don't need dynamic field for new points

- reduce code in sampledIsoSurfaceCell
2020-12-08 13:31:22 +01:00
811a83599e CONFIG: change default distanceSurface algorithm from 'cell' to 'topo'
- yields cleaner surfaces with few cuts.

  Can use isoMethod keyword to select cell/point/topo if they prove
  better for any particular case.

CONFIG: change default cuttingPlane algorithm from 'cell' to 'topo'
2020-12-08 13:31:22 +01:00
b1a27d3d00 ENH: rename 'classic' Foam::isoSurface as Foam::isoSurfacePoint
- better distinction between types of algorithms.
  Easier for future deprecation/replacement.
2020-12-08 13:31:22 +01:00
be783632f2 ENH: isoSurfaceParams
- bundles selection and control parameters used when creating
  iso-surfaces. This simplifies selection and specification

- drop old compatibility handling of "cell" as a bool

- harmonize filter/regularisation flags for iso-surface

- for dictionary input, accept "isoMethod" and "isoAlgorithm" as being
  synonymous. Using "isoMethod" is less subject to typing errors.
2020-12-08 13:31:22 +01:00
61dd6aa701 ENH: code consistency in sampling
TUT: dictionary form of surfaces instead of list
2020-12-08 13:18:38 +01:00
b966b7cd4b ENH: static test methods for matching simple cell shapes
- (tet, pyr, hex) can be identified from their number of faces
  and vertices. For these common shapes can use static `test()`
  method instead of the virtual isA() method.

  This is much cheaper for calling on an individual basis since
  it avoids the overhead of constructing an object.

ENH: tetCell edge/reverseEdge (already had tetEdge)
2020-12-08 11:58:27 +01:00
f8d08a805b ENH: additional handling for out-of-range sampling (#1891)
- when sampling onto a meshed surface, the sampling surface may be
  outside of the mesh region, or simply too far away to be considered
  reasonable.

  Can now specify a max search distance and default values for samples
  that are too distant.
  If a default value is not specified, uses Type(Zero).

  Eg,

      maxDistance     0.005;
      defaultValue
      {
          "p.*"   1e5;
          T       273.15;
          U       (-100 -100 -100);
      }
2020-11-30 13:59:10 +01:00
a947e9ddcf ENH: new sampled faceZones (#1874) 2020-11-30 13:59:10 +01:00
90fe49e8e5 ENH: adjust sampledPatch (#1874) for similarity with surfaceFieldValue 2020-11-30 13:59:10 +01:00
52c6642a4c Merge remote-tracking branch 'origin/master' into develop 2020-11-25 21:30:49 +01:00
ac98e498fe BUG: meshToMesh - corrected mapping of internal field for tgt->src mapping. Fixes #1935 2020-11-24 12:01:15 +00:00
07bbae0c55 STYLE: use brace constructors for Foam::zero and Foam::one
- makes it clearer that these are constructors and not function calls
2020-11-19 16:57:45 +01:00
f999013f41 ENH: use static to define default blockMesh verbosity
- make handling of verbosity more consistent.

  Make all setter return the old value, remove (unused) default
  parameter as being counter-intuitive.  This makes it easier to
  restore the original values.

  For example,

     const bool oldVerbose = sampler.verbose(false);
     ...
     sampler.verbose(oldVerbose);
2020-10-28 16:04:12 +01:00
e18ff114a6 ENH: add UPstream::allProcs() method
- returns a range of `int` values that can be iterated across.
  For example,

      for (const int proci : Pstream::allProcs()) { ... }

  instead of

      for (label proci = 0; proci < Pstream::nProcs(); ++proci) { ... }
2020-09-28 14:25:59 +02:00
a9bf69b551 ENH: suppress surface Face-id field if writer manages that itself (#1600)
- for CAE formats such as abaqus, nastran, starcd, etc, the element id
  is already part of the output format itself. For these cases, there
  is no use in generating an additional "Ids" field.

ENH: add code to ignore negative face ids

- these will arise from very special cases, such as when a
  solid element and side are encoded into a single integer.

BUG: starcd surface values output did not use original face ids
2020-09-16 17:27:56 +02:00
12c91b9472 STYLE: check autoPtr as plain bool instead of valid()
- cleaner code, more similarity with unique_ptr

  Now
      if (ptr)
      if (!ptr)

  instead
      if (ptr.valid())
      if (!ptr.valid())
2020-07-16 11:39:24 +02:00
9af3f85cf9 STYLE: simplify short-circuit involving autoPtr (#1775)
- with '&&' conditions, often better to check for non-null autoPtr
  first (it is cheap)

- check as bool instead of valid() method for cleaner code, especially
  when the wrapped item itself has a valid/empty or good.
  Also when handling multiple checks.

  Now
      if (ptr && ptr->valid())
      if (ptr1 || ptr2)

  instead
      if (ptr.valid() && ptr->valid())
      if (ptr1.valid() || ptr2.valid())
2020-07-16 10:17:25 +02:00
3baebcb101 STYLE: replace uses of autoPtr::empty() with bool check (#1775)
- less clutter using plain tests with the bool operator:

      (!ptr)  vs  (ptr.empty())
      (ptr)   vs  (!ptr.empty())
2020-07-16 08:58:22 +02:00
538d749220 REL: Updated headers to version v2006 2020-06-29 17:27:54 +01:00
0a7eb6e6dc BUG: bad names if ensight mask contains NO placeholder (fixes #1747)
- affects ensightSurfaceReader only.

  If there are no `*` characters, protect against replacement.
  Otherwise it would attempt to replace a zero-length string with
  a single `0`, which results in prepending the name.

STYLE: ensightSurfaceReader constructor explicit
2020-06-25 11:54:38 +02:00
7c1c9fee0c ENH: Updated AMI dependent code 2020-06-24 22:10:20 +01:00
2a955ad949 AMI: deprecated directAMI - use nearestFaceAMI instead 2020-06-24 22:10:19 +01:00
1251b82175 ENH: ensightSurfaceReader updates re: replacing file name masks 2020-06-18 21:55:44 +01:00