Commit Graph

148 Commits

Author SHA1 Message Date
68b692fdfc ENH: combine loadOrCreateMesh from redistributePar into fvMeshTools.
- similar functionality as newMesh etc.
  Relocated to finiteVolume since there are no dynamicMesh dependencies.

- use simpler procAddressing (with updated mapDistributeBase).
  separated from redistributePar
2022-05-17 17:35:51 +02:00
809fc70166 BUG: redistributePar: reconstruct mesh 2022-05-11 16:06:52 +01:00
efe057897f ENH: foamToVTK attempt finite-area write if -with-ids is specified
- previously filtered on the existence of area fields, but with
  faMesh::TryNew this is not required anymore.

STYLE: enable -verbose for various parallel utilities (consistency)
2022-05-11 11:34:04 +02:00
cf7dbf4d42 ENH: relocate/refactor fvMeshSubset
- direct construct and reset method for creating a zero-sized (dummy)
  subMesh. Has no exposed faces and no parallel synchronization
  required.

- core mapping (interpolate) functionality with direct handling
  of subsetting in fvMeshSubset (src/finiteVolume).
  Does not use dynamicMesh topology changes

- two-step subsetting as fvMeshSubsetter (src/dynamicMesh).
  Does use dynamicMesh topology changes.
  This is apparently only needed by the subsetMesh application itself.

DEFEATURE: remove deprecated setLargeCellSubset() method

- was deprecated JUL-2018, now removed (see issue #951)
2022-04-29 11:44:29 +02:00
6e21d6f78c ENH: refactor/centralize handling of direct and distributed mappers (#2436)
- added templating level to avoid code duplication and provide future
  extensibility
2022-04-29 11:44:29 +02:00
b68193088c ENH: add GeometricBoundaryField evaluateCoupled method (#2436)
- allows restricted evaluation to specific coupled patch types.
  Code relocated/refactored from redistributePar.

STYLE: ensure use of waitRequests() also corresponds to nonBlocking

ENH: additional copy/move construct GeometricField from DimensionedField

STYLE: processorPointPatch owner()/neighbour() as per processorPolyPatch

STYLE: orientedType with bool cast operator and noexcept
2022-04-29 11:44:29 +02:00
18e0d7e4d6 ENH: bundle broadcasts (#2371)
- additional Pstream::broadcasts() method to serialize/deserialize
  multiple items.

- revoke the broadcast specialisations for std::string and List(s) and
  use a generic broadcasting template. In most cases, the previous
  specialisations would have required two broadcasts:
    (1) for the size
    (2) for the contiguous content.

  Now favour reduced communication over potential local (intermediate)
  storage that would have only benefited a few select cases.

ENH: refine PstreamBuffers access methods

- replace 'bool hasRecvData(label)' with 'label recvDataCount(label)'
  to recover the number of unconsumed receive bytes from specified
  processor.  Can use 'labelList recvDataCounts()' to recover the
  number of unconsumed receive bytes from all processor.

- additional peekRecvData() method (for transcribing contiguous data)

ENH: globalIndex whichProcID - check for isLocal first

- reasonable to assume that local items are searched for more
  frequently, so do preliminary check for isLocal before performing
  a more costly binary search of globalIndex offsets

ENH: masterUncollatedFileOperation - bundled scatter of status
2022-04-29 11:44:28 +02:00
d38de84d21 ENH: bundle Pstream:: AllGather methods
- bundles frequently used 'gather/scatter' patterns more consistently.

  - combineAllGather     -> combineGather + broadcast
  - listCombineAllGather -> listCombineGather + broadcast
  - mapCombineAllGather  -> mapCombineGather + broadcast
  - allGatherList        -> gatherList + scatterList
  - reduce               -> gather + broadcast (ie, allreduce)

- The allGatherList currently wraps gatherList/scatterList, but may be
  replaced with a different algorithm in the future.

STYLE: PstreamCombineReduceOps.H is mostly unneeded now
2022-03-31 15:56:04 +02:00
e98acdc4fc ENH: extend type aliases to include geometric boundary fields (#2348)
STYLE: LduInterfaceFieldPtrsList as alias instead of a class

STYLE: define patch lists typedefs when defining the base patch

- eg, polyPatchList typedef within polyPatch.H

INT: relocate GeometricField::Boundary -> GeometricBoundaryField

- was internal to GeometricField but moving it outside simplifies
  forward declarations etc. Code adapted from openfoam.org
2022-03-30 16:36:03 +02:00
62fc3bbc33 STYLE: broadcast instead of combineScatter/listCombineScatter/mapCombineScatter
- these are the same thing now and 'broadcast' expresses the intention
  more directly/consistently
2022-03-12 21:16:30 +01:00
0cf02eb384 ENH: globalIndex with direct gather/broadcast
- less communication than gatherList/scatterList

ENH: refine send granularity in Pstream::exchange

STYLE: ensure PstreamBuffers and defaultCommsType agree

- simpler loops for lduSchedule
2022-03-12 21:16:29 +01:00
14631984df ENH: additional control and access methods for PstreamBuffers
- PstreamBuffers nProcs() and allProcs() methods to recover the rank
  information consistent with the communicator used for construction

- allowClearRecv() methods for more control over buffer reuse
  For example,

      pBufs.allowClearRecv(false);

      forAll(particles, particlei)
      {
          pBufs.clear();

          fill...

          read via IPstream(..., pBufs);
       }

  This preserves the receive buffers memory allocation between calls.

- finishedNeighbourSends() method as compact wrapper for
  finishedSends() when send/recv ranks are identically
  (eg, neighbours)

- hasSendData()/hasRecvData() methods for PstreamBuffers.

  Can be useful for some situations to skip reading entirely.
  For example,

      pBufs.finishedNeighbourSends(neighProcs);

      if (!returnReduce(pBufs.hasRecvData(), orOp<bool>()))
      {
          // Nothing to do
          continue;
      }
      ...

  On an individual basis:

      for (const int proci : pBufs.allProcs())
      {
          if (pBufs.hasRecvData(proci))
          {
             ...
          }
      }

  Also conceivable to do the following instead (nonBlocking only):

      if (!returnReduce(pBufs.hasSendData(), orOp<bool>()))
      {
          // Nothing to do
          pBufs.clear();
          continue;
      }

      pBufs.finishedNeighbourSends(neighProcs);
      ...
2022-03-04 17:49:23 +00:00
af8161925b ENH: use mpi gather for list values in a few places
- avoid gatherList/scatterList when value are only need on master
2022-03-04 17:49:23 +00:00
f3674eee36 ENH: simpler use of broadcast (via Pstream::scatter)
- avoids worrying about forgetting a (Pstream::parRun()) guard
  and reduces code. The Pstream::scatter does the same thing under the
  hood.
2022-03-04 17:49:23 +00:00
1348cd7e7b ENH: use broadcasting Pstreams for one-to-all sends 2022-03-04 17:49:23 +00:00
62ec2f2ddf COMP: deprecate domainName and full hostName (#2280)
- unused in regular OpenFOAM code
- POSIX version uses deprecated gethostbyname()
- Windows version never worked

COMP: localize, noexcept on internal OSspecific methods

STYLE: support fileName::Type SYMLINK and LINK as synonyms
2022-02-10 16:46:12 +01:00
debbcfb7df BUG: redistributePar: handle cyclicA(C)MI cleaner. See #1558.
Should test on patch, not patch field
2022-02-10 13:46:21 +00:00
7fa44e3c19 BUG: redistributePar: handle cyclicA(C)MI cleaner. See #1558. 2022-02-09 14:17:17 +00:00
d2961eec09 STYLE: avoid deprecation warnings for autoPtr set() method
- set() was silently deprecated in favour of reset() FEB-2018
  since the original additional check for overwriting an existing
  pointer was never used. The reset(...) name is more consistent
  with unique_ptr, tmp etc.

  Now emit deprecations for set().

- use direct test for autoPtr, tmp instead of valid() method.
  More consistent with unique_ptr etc.

STYLE: eliminate redundant ptr() use on cloned quantities
2022-01-24 12:26:38 +01:00
fa5d79d0e5 ENH: redistributePar: add comment 2022-01-12 09:16:04 +00:00
7da2a5e096 ENH: redistributePar: reconstruct mode in collated. Fixes #2194 2021-12-10 15:24:04 +00:00
b364a9e72c ENH: argList improvements
- argList::envExecutable() static method.
  This is identical to getEnv("FOAM_EXECUTABLE"), where the name of
  the executable has typically been set from the argList construction.

  Provides a singleton access to this value from locations that
  do not have knowledge of the originating command args (argList).
  This is a similar rationale as for the argList::envGlobalPath() static.

- additional argList::envRelativePath() static method.

- make -dry-run handling more central and easier to use by adding into
  argList itself.

STYLE: drop handling of -srcDoc (v1706 option)

- replaced with -doc-source for 1712 and never used much anyhow
2021-11-03 11:38:21 +01:00
b157614e00 ENH: redistributePar: write collated format. #806
- supports redistributePar -decompose -fileHandler collated
- supports redistributePar -reconstruct
- does not support redistributePar with collated in redistribution mode
2021-10-19 12:18:07 +01:00
fe8c630936 BUG: Foam::cp inadvertently creates recursive directories (fixes #2235)
- noticed by Robin Knowles with `decomposePar -fields -copyZero`

  The internals for the Foam:cp method combine the behaviour of
  a regular `cp` and `cp -R` combined.

  When source and target are both directories, the old implementation
  created a subdirectory for the contents.
  This normally fine,

      ok:  cp "path1/0/" to "path2/1" -> "path2/1/2"
      BUT: cp "path1/0/" to "path2/0" -> "path2/0/0" !!

  Now add check for the basenames first.
  If they are identical, we probably meant to copy directory contents
  only, without the additional subdir layer.

BUG: decomposePar -fields -copyZero copies the wrong directory

- was using the current time name (usually latest) instead of copying
  the 0 directory

ENH: accept 0.orig directories as a fallback to copy if the 0 directory
is missing
2021-10-18 14:58:17 +02:00
4028738327 ENH: redistributePar - detect if reconstruct is required (#2092) 2021-05-19 18:16:06 +02:00
5022591c36 ENH: return old file handler on change
- intended for the following type of use:

      auto oldHandler = fileHandler(fileOperation::NewUncollated());

      ... do something that only works with uncollated

      // Restore previous (if any)
      if (oldHandler)
      {
          fileHandler(std::move(oldHandler));
      }

ENH: make fileOperation distributed(bool) mutable

- use is "static-like" and akin to Pstream::parRun(bool),
  thus allow toggling of the switch without a const_cast
2021-05-13 11:39:30 +02:00
2a438385a3 STYLE: make polyMesh constructor explicit
- use polyMesh::defaultRegion instead of fvMesh::defaultRegion and
  others via static inheritance. (92 vs ~25 occurrences)
2021-05-12 11:24:57 +02:00
c410edf928 ENH: centralized handling of -allRegions, -regions, -region (#2072)
Step 1.
    include "addAllRegionOptions.H"

    Adds the -allRegions, -regions and -region options to argList.

Step 2.
    include "getAllRegionOptions.H"

    Processes the options with -allRegions selecting everything
    from the regionProperties.

    OR use -regions to specify multiple regions (from
       regionProperties), and can also contain regular expressions

    OR use the -region option

    Specifying a single -regions NAME (not a regular expresssion)
    is the same as -region NAME and doesn't use regionProperties

    Creates a `wordList regionNames`

Step 3.
    Do something with the region names.
    Either directly, or quite commonly with the following

    include "createNamedMeshes.H"

    Creates a `PtrList<fvMesh> meshes`

STYLE: add description to some central include files
2021-05-07 09:46:33 +02:00
9a2a22a03a ENH: provide setter methods for IOobject read/write options etc.
- simplifies local toggling.

- centralize fileModification static variables into IOobject.
  They were previously scattered between IOobject and regIOobject
2021-03-17 15:10:00 +01:00
3299f9ac0d ENH: redistributePar: single-step. See #1211
Support for DimensionedFields
2021-03-17 12:21:46 +00:00
db343351f7 BUG: redistributePar: single-step. See #1211
- override casename, procesorCase flags to guarantee reconstructed
case to be written to the undecomposed directory
- alternative is to construct a Zero mesh on the undecomposed
runTime and add all other bits to that but that has not been
pursued
2021-03-15 08:31:10 +00:00
ba9e573812 ENH: redistributePar: single-step. See #1211
- single-step for reconstructParMesh
- no point merging for redistributePar -reconstruct
2021-03-08 11:01:57 +00:00
f5e689c6a8 BUG: redistributePar: symmetric logic. Fixes #1973. 2021-01-04 14:44:28 +00:00
dbaed65d75 BUG: redistributePar: failing reconstruct. See #1953.
In reconstruct mode redistributePar will have
- master read undecomposed mesh
- slaves construct dummy mesh (0 faces/points etc.)
  but correct patches and zones
so all processors have two valid meshes. This was
all handled inside fvMeshTools::newMesh and this
was behaving differently.
2020-12-16 17:27:08 +00:00
723edc1c61 ENH: redistributePar: avoid temporary unassigned faces. See #1956. 2020-12-16 17:27:08 +00:00
46dbfabd9d ENH: primitiveMesh: make geometry calculation runtime selectable
This adds a 'geometry' scheme section to the system/fvSchemes:

geometry
{
    type            highAspectRatio;
}

These 'fvGeometryMethod's are used to calculate
- deltaCoeffs
- nonOrthoCoeffs
etc and can even modify the basic face/cellCentres calculation.
2020-12-11 10:31:34 +00:00
8268d8aaba BUG: redistributePar: avoid par comms. Fixes #1953 2020-12-10 15:43:28 +00:00
89f2cda3ab ENH: mpi: use per-application communicator. 2020-12-09 15:17:44 +00:00
9c7aa9727a ENH: add UPstream::parRun(const bool)
- slightly neater code when disabling/restoring parallel state

  New
      const bool oldParRun = Pstream::parRun(false);
      ...
      Pstream::parRun(oldParRun);

  Old
      const bool oldParRun = Pstream::parRun();
      Pstream::parRun() = false;
      ...
      Pstream::parRun() = oldParRun;
2020-10-12 12:51:22 +02:00
5dc5ea928a ENH: add UPstream::subProcs() static method
- returns a range of `int` values that can be iterated across.
  For example,

      for (const int proci : Pstream::subProcs()) { ... }

  instead of

      for
      (
          int proci = Pstream::firstSlave();
          proci <= Pstream::lastSlave();
          ++proci
      )
      {
          ...
      }
2020-09-28 14:26:07 +02:00
e18ff114a6 ENH: add UPstream::allProcs() method
- returns a range of `int` values that can be iterated across.
  For example,

      for (const int proci : Pstream::allProcs()) { ... }

  instead of

      for (label proci = 0; proci < Pstream::nProcs(); ++proci) { ... }
2020-09-28 14:25:59 +02:00
12c91b9472 STYLE: check autoPtr as plain bool instead of valid()
- cleaner code, more similarity with unique_ptr

  Now
      if (ptr)
      if (!ptr)

  instead
      if (ptr.valid())
      if (!ptr.valid())
2020-07-16 11:39:24 +02:00
9af3f85cf9 STYLE: simplify short-circuit involving autoPtr (#1775)
- with '&&' conditions, often better to check for non-null autoPtr
  first (it is cheap)

- check as bool instead of valid() method for cleaner code, especially
  when the wrapped item itself has a valid/empty or good.
  Also when handling multiple checks.

  Now
      if (ptr && ptr->valid())
      if (ptr1 || ptr2)

  instead
      if (ptr.valid() && ptr->valid())
      if (ptr1.valid() || ptr2.valid())
2020-07-16 10:17:25 +02:00
aa956f4b05 ENH: Pstream: Feed through outstanding requests more. See #1626.
This e.g. was giving a problem with using volPointInterpolation (in
functionObjects) with non-blocking global reductions.
2020-06-10 12:10:02 +01:00
31b172217c ENH: support predicate checks for argList (similar to dictionary methods)
- Favour use of argList methods that are more similar to dictionary
  method names with the aim of reducing the cognitive load.

  * Silently deprecate two-parameter get() method in favour of the
    more familiar getOrDefault.
  * Silently deprecate opt() method in favour of get()

  These may be verbosely deprecated in future versions.
2020-06-02 13:51:18 +02:00
8eeb5e8699 ENH: redistributePar: handle cyclicACMI. See #1558.
Explicitly avoid updating cyclicACMI.
2020-05-20 18:03:54 +01:00
42299dca22 ENH: use IOstreamOption for writeObject() calls.
- reduces the number of parameters that are being passed around
  and allows future additions into the IOstreamOption with mininal
  effort.
2020-02-19 09:25:33 +00:00
87b3006566 STYLE: backslash doxygen commands, email address, typos in error messages 2020-01-31 17:06:30 +01:00
1310e85225 ENH: support 'get()' for retrieving argList options
- previously only had 'opt<..>()' for options, but 'get<..>()'
  provides more similarity with dictionary methods.
  The 'opt<..>()' method is retained.
2019-11-26 21:07:11 +01:00
fdf8d10ab4 Merge commit 'e9219558d7' into develop-v1906 2019-12-05 11:47:19 +00:00