Commit Graph

1361 Commits

Author SHA1 Message Date
422654a9ea ENH: added UPstream::waitAnyRequest(UList<UPstream::Request>&)
- waits for completion of any of the listed requests and returns the
  corresponding index into the list.
  This allows, for example, dispatching of data when the receive is
  completed.
2023-02-09 11:11:36 +01:00
add61ca273 ENH: support UOPstream and UIPstream as formatters with an external buffer
- can split serialise/de-serialise and send/recv actions
2023-02-09 10:44:42 +01:00
068ab8ccc7 ENH: add separate tracking of MPI_Comm_free, MPI_Group_free pending
- permits distinction between communicators/groups that were
  user-created (eg, MPI_Comm_create) versus those queried from MPI.
  Previously simply relied on non-null values, but that is too fragile

ENH: support List<Request> version of UPstream::finishedRequests

- allows more independent algorithms

ENH: added UPstream::probeMessage(...). Blocking or non-blocking
2023-02-07 22:39:00 +01:00
173c9ac163 ENH: reduce storage and startup communication for processorTopology
- previously built the entire adjacency table (full communication!)
  but this is only strictly needed when using 'scheduled' as the
  default communication mode. For blocking/nonBlocking modes this
  information is not necessary at that point.

  The processorTopology::New now generally creates a smaller amount of
  data at startup: the processor->patch mapping and the patchSchedule.

  If the default communication mode is 'scheduled', the behaviour is
  almost identical to previously.

- Use Map<label> for the processor->patch mapping for a smaller memory
  footprint on large (ie, sparsely connected) cases. It also
  simplifies coding and allows recovery of the list of procNeighbours
  on demand.

- Setup the processor initEvaluate/evaluate states with fewer loops
  over the patches.

========
BREAKING: procNeighbours() method changed definition

- this was previously the entire adjacency table, but is now only the
  processor-local neighbours. Now use procAdjacency() to create or
  recover the entire adjacency table.

  The only known use is within Cloud<ParticleType>::move and there it
  was only used to obtain processor-local information.

  Old:
      const labelList& neighbourProcs =
          mesh.globalData().topology().procNeighbours()[Pstream::myProcNo()];

  New:
      const labelList& neighbourProcs =
          mesh.globalData().topology().procNeighbours();

      // If needed, the old definition (with communication!)
      const labelListList& connectivity =
          mesh.globalData().topology().procAdjacency();
2023-02-07 22:39:00 +01:00
c0e63a8de7 ENH: MeshObject: specify name (instead of typeName) 2023-02-01 15:32:14 +00:00
0190fed56b ENH: support slicing for finiteArea fields 2023-01-31 12:45:38 +01:00
5672bb296f ENH: use cmptMag, cmptMultiply instead of replacing field components 2023-01-31 12:36:41 +01:00
eb8b51b475 ENH: use back(), pop_back() instead remove()
- adjust looping to resemble LIFO pattern

STYLE: adjust some string includes
2023-01-27 09:50:46 +01:00
7c60c80edd ENH: new/revised emplace_back() [for DynamicList/List/PtrDynList/PtrList]
- returns reference as per C++17 std::vector

STYLE: drop unused, redundant DynamicField remove() method
2023-01-27 09:50:45 +01:00
c1cdacc0b4 COMP: missing default parameters for UIPstream::read
ENH: support UIPstream::read, UOPstream::write with UList, SubList
2023-01-27 09:49:16 +01:00
0c756cc676 ENH: define linear interpolations for scalar, complex, vector, tensor...
- vector, tensor versions are defined component-wise
  to avoid intermediates.

  The base version uses the form "(1-t)*a + t*b" without any bounds
  checking (ie, will also extrapolate).
2023-01-23 14:55:08 +01:00
ba153df8db ENH: improved handling for clamping
- proper component-wise clamping for MinMax clamp().

- construct clampOp from components

- propagate clamp() method from GeometricField to FieldField and Field

- clamp_min() and clamp_max() for one-sided clamping,
  as explicit alternative to min/max free functions which can
  be less intuitive and often involve additional field copies.

- top-level checks to skip applying invalid min/max ranges
  and bypass the internal checks of MinMax::clamp() etc.
2023-01-23 14:52:29 +01:00
3888bfa17f ENH: UList iterators at offset from begin
- simplifies addressing within sub-ranges.
  Clamps the access range directly
2023-01-23 14:52:29 +01:00
ecaa55295b ENH: add dimensionedLabel typedef
GIT: primitives/compat with compatibility includes
GIT: primitives/traits with pTraits, contiguous, zero, one etc.

COMP: relocate base equal(a,b) definition from scalar.H -> label.H
- make more universally available

STYLE: replace occasional use of notEqual(a,b) with !equal(a,b)
2023-01-23 11:38:54 +01:00
568ced68e2 ENH: support independent handling of MPI requests (#2674)
- UPstream::Request wrapping class provides an opaque wrapper for
  vendor MPI_Request values, independent of global lists.

ENH: support for MPI barrier (blocking or non-blocking)
ENH: support for MPI sync-send variants

STYLE: deprecate waitRequests() without a position parameter

- in many cases this can indicate a problem in the program logic since
  normally the startOfRequests should be tracked locally.
2023-01-12 21:19:12 +01:00
7e61f36c12 RELEASE: Updated headers to v2212 2022-12-21 16:16:18 +00:00
b69db76b67 ENH: bundle together freed/outstanding MPI request handling
- improve communicator wrapping
- avoid indexing errors when using partial subranks
- UPstream::is_subrank (for testing partial subranks)
2022-12-09 10:59:32 +01:00
3151dacccc ENH: include <algorithm> in stdFoam.H
- was already included in many places (via UList.C templates), but now
  formalise by placing in stdFoam.H
2022-12-01 15:52:48 +00:00
8ae2e5a969 ENH: fail-safe access of ITstream tokens as front(), back()
- more standard naming than peekFront() etc
2022-12-01 14:51:19 +00:00
8d4e32da22 COMP: fixup test applications 2022-12-01 14:51:19 +00:00
ffeef76d8f ENH: cleaner separation of global and local world naming
- UPstream::globalComm constant always refers to MPI_COMM_WORLD but
  UPstream::worldComm could be MPI_COMM_WORLD (single world)
  or a dedicated local communicator (for multi-world).

- provide a Pstream wrapped version of MPI_COMM_SELF,
  references as UPstream::selfComm

- UPstream::isUserComm(label)
  test for additional user-defined communicators
2022-12-01 12:18:38 +00:00
8c02820db6 COMP: EigenMatrix: remove unused iter variable 2022-11-24 13:47:08 +00:00
98598ba0bb ENH: use simpler constructor forms for treeData types 2022-11-24 12:21:01 +00:00
fc0b980333 BUG: avoid infinite recursion in AABBTree (fixes #2616)
- since bounding boxes overlap, need to verify the splitting actually
  did something. Problem only really evident with higher tree depths.
2022-11-24 12:21:01 +00:00
38b663b6a8 ENH: add boundBox/triangle intersection test to boundBox
- replaces edge by edge tests with separating axis tests
2022-11-24 12:21:01 +00:00
b129446221 ENH: simplify sub-octant bound-box search
- basic support for splitting into two at a given position and face to keep
2022-11-24 12:21:01 +00:00
e5006a62d7 ENH: use simpler boundBox handling
- use default initialize boundBox instead of invertedBox
- reset() instead of assigning from invertedBox
- extend (three parameter version) and grow method
- inflate(Random) instead of extend + re-assigning
2022-11-24 12:21:01 +00:00
1339c3357b ENH: general boundBox/treeBoundBox improvements
- null() static method
  * as const reference to the invertedBox with the appropriate casting.

- boundBox inflate(random)
  * refactored from treeBoundBox::extend, but allows in-place modification

- boundBox::hexFaces() instead of boundBox::faces
  * rarely used, but avoids confusion with treeBoundBox::faces
    and reuses hexCell face definitions without code duplication

- boundBox::hexCorners() for corner points corresponding to a hexCell.
  Can also be accessed from a treeBoundBox without ambiguity with
  points(), which could be hex corners (boundBox) or octant corners
  (treeBoundBox)

- boundBox::add with pairs of points
  * convenient (for example) when adding edges or a 'box' that has
    been extracted from a primitive mesh shape.

- declare boundBox nPoints(), nFaces(), nEdges() as per hexCell

ENH: return invertedBox instead of FatalError for empty trees

- similar to #2612

ENH: cellShape(HEX, ...) + boundBox hexCorners for block meshes

STYLE: cellModel::ref(...) instead of de-reference cellModel::ptr(...)
2022-11-24 12:21:01 +00:00
e4139898d2 ENH: face::connected() method
- return true if two faces share a common vertex.

  Same idea as the existing edge::connected() method
  (previously spelled 'connects()')
2022-11-24 12:21:01 +00:00
d3e285b48b ENH: add FixedList templated get<unsigned>() methods
- provides fast compile-time indexing for FixedList
  (invalid indices trigger a compiler error).

  This enables noexcept access, which can propagate into various
  other uses (eg, triFace, triPoints, ...)

ENH: add triangle edge vectors
2022-11-24 12:21:01 +00:00
c7e6ae30bf ENH: add front(), back() methods to List containers
- traditionally used first(), last() methods,
  but front(), back() are well-known from std::vector etc
  which makes the access more familiar.

- support push_back() method for containers that already had append().
  This increases name familiar and can help when porting between
  different C++ code bases.

- support pop_back() method for List containers.
  This is similar to std::vector
2022-11-24 12:21:01 +00:00
f3ba6c6da0 ENH: linked-lists accept more familiar STL method names
- ie, front(), back(), push_front(), push_back(), pop_front()

ENH: add CircularBuffer flattening operator() and list() method

- useful if assigning content to a List etc

BUG: CircularBuffer find() did not return logical index
2022-11-24 12:21:01 +00:00
21e7ce8f42 STYLE: place HashTable trivial methods in the header (reduce clutter) 2022-11-20 16:55:58 +01:00
1b11e4b3ac CONFIG: restrict wmakeLnInclude to header/template files
- source-code (.c, .cpp etc) only adds to clutter in the lnInclude
  directory
2022-11-19 12:41:55 +01:00
d7bf2d400d BUG: string wrapping (eg, argList help) truncates character (#2625)
- had an off-by-one in the accounting for some corner caes,
  partly because the logic was a bit convoluted

ENH: improved string wrapping (#2625)

- reworked logic (like a state machine) to handle backtracking
  with fallback of splitting near punctuation characters.

  Still doesn't compete with nroff or TeX, but does avoid long lines
  and many funny splits.  With this change the help for mapFieldsPar
  now like this:

  =====
      Specify the mapping method
      (direct|mapNearest|cellVolumeWeight|
      correctedCellVolumeWeight)
  =====

  Since the list of options is very long without any spaces, it takes
  '|' as the best split point, which definitely reads better
2022-11-18 21:14:22 +01:00
0fabbcb404 ENH: direct ensight output of float/double
- since ensight format is always float and also always written
  component-wise, perform the double -> float narrowing when
  extracting the components.  This reduces the amount of data
  transferred between processors.

ENH: avoid vtk/ensight parallel communication of empty messages

- since ensight writes by element type (eg, tet, hex, polyhedral) the
  individual written field sections will tend to be relatively sparse.
  Skip zero-size messages, which should help reduce some of the
  synchronization bottlenecks.

ENH: use 'data chunking' when writing ensight files in parallel

- since ensight fields are written on a per-element basis, the
  corresponding segment can become rather sparsely distributed. With
  'data chunking', we attempt to get as many send/recv messages in
  before flushing the buffer for writing. This should make the
  sequential send/recv less affected by the IO time.

ENH: allow use of an external buffer when writing ensight components

STYLE: remove last vestiges of autoPtr<ensightFile> for output routines
2022-11-15 17:26:09 +01:00
5338e56c73 ENH: add support for OFstream atomic file creation (#2631)
- with ATOMIC, an intermediary file is created - eg, (fileAbc~tmp~)
  where all of the output is written to. When the stream goes out of
  scope, this intermediary file is moved/renamed to the actually
  output name - eg, (fileAbc~tmp~) -> (fileAbc).

  This adds some safety if the simulation crashes while writing the
  file, since it will the partial (corrupt) file will be left
  behind as (fileAbc~tmp~) and not as (fileAbc), which means it will
  will be treated as a backup file and not loaded again on restart.

ENH: provided enumeration for APPEND/NON_APPEND

- clearer than using bool (with comments).
  Since append mode is primarily only used by masterOFstream etc
  this change is unlikely to affect user coding.

ENH: use file atomic for ensight file creation

- avoids corrupt (truncated) files being referenced by the ensight
  case file if the simulation crashes while writing the ensight file.
2022-11-15 14:10:01 +01:00
9f7cfa9419 ENH: support libz disabling via WM_COMPILE_CONTROL (as ~libz)
- eg, for partially incomplete systems (without libz devel header)

ENH: clearer binding of dummy Pstream in OpenFOAM/Make/options

- link of dummy stub Pstream now contingent on linking libOpenFOAM as
  well. This makes the purpose slightly clearer

ENH: cleaner option naming/handling in wmake script

- allow special purpose -no-openfoam option.
  Eg, compiling test programs without OpenFOAM and Pstream libraries
  but using the rest of the wmake system.

ENH: add +openmp support into WM_COMPILE_CONTROL (#2633)

- this adds compile/link flags for openmp.
  For single-use, can also use 'wmake -openmp'.

  If both +openmp and ~openmp are specified in WM_COMPILE_CONTROL
  the ~openmp will have priority.

  This is actually done indirectly since ~openmp will set empty
  COMP_OPENMP, LINK_OPENMP internal variables, which the +openmp then
  adds to the c++FLAGS and linkexe targets (ie, won't actually add
  anything).

ENH: add +ccache or ccache=... support into WM_COMPILE_CONTROL (#2633)

- with the first version (+ccache), simply use ccache from the path
  without any extra options.

- with the second version (ccache=...), can be more specific about
  what is called.

  Using "+ccache" is identical to "ccache=ccache", but the later could
  be used in other ways. For example,

     ccache=/strange/install/path/ccache
     ccache=</path/my-tooling --option>

  Have the choice of unquoted, single or double quoted or '< >' quoted

STYLE: relocate FOAM_EXTRA_LDFLAGS in general makefile

- removes clutter for different linkers (eg, gold, mold, ldd)
  making it easier to extend for other linkers.

STYLE: protect makefile checks with 'strip' function
2022-11-15 14:00:18 +01:00
70208a7399 ENH: use returnReduceAnd(), returnReduceOr() functions
DOC: document which MPI send/recv are associated with commType
2022-11-08 16:48:08 +00:00
473e14418a ENH: more consistent use of broadcast, combineReduce etc.
- broadcast           : (replaces scatter)
  - combineReduce       == combineGather + broadcast
  - listCombineReduce   == listCombineGather + broadcast
  - mapCombineReduce    == mapCombineGather + broadcast
  - allGatherList       == gatherList + scatterList

  Before settling on a more consistent naming convention,
  some intermediate namings were used in OpenFOAM-v2206:

    - combineReduce       (2206: combineAllGather)
    - listCombineReduce   (2206: listCombineAllGather)
    - mapCombineReduce    (2206: mapCombineAllGather)
2022-11-08 16:48:08 +00:00
2202995f5c ENH: expose IntRange {begin,end}_value() methods
- end_value() corresponds to the infrequently used after() method, but
  with naming that corresponds better to iterator naming conventions.

  Eg,

     List<Type> list = ...;
     labelRange range = ...;

     std::transform
     (
         (list.data() + range.begin_value()),
         (list.data() + range.end_value()),

         outIter,
         op
     );

- promote min()/max() methods from labelRange to IntRange base class

STYLE: change timeSelector from "is-a" to "has-a" scalarRanges.
2022-10-31 18:36:15 +01:00
21f037e3a0 ENH: single/double value reset method for MinMax
- resets min/max to be identical to the specified value,
  which can be more convenient (and slightly more efficient) than doing
  a full reset followed by add()

- additional MinMax intersects() query, which works like overlaps()
  but with exclusive checks at the ends

- provide MinMax::operator&=() to replace (unused) intersect() method

ENH: single/double value reset method for boundBox

- boundBox::operator&=() to replace (rarely used) intersect() method.
  Deprecate boundBox::intersect() to avoid confusion with various
  intersects() method

COMP: provide triangleFwd.H
2022-10-31 18:36:14 +01:00
c973066646 ENH: supplementary vector comparison methods
- background: for some application it can be useful to have fully
  sorted points. i.e., sorted by x, followed by y, followed by z.

  The default VectorSpace 'operator<' compares *all*
  components. This is seen by the following comparisons

  1.  a = (-2.2 -3.3 -4.4)
      b = (-1.1 -2.2 3.3)

      (a < b) : True
      Each 'a' component is less than each 'b' component

  2.  a = (-2.2 -3.3 -4.4)
      b = (-2.2 3.3 4.4)

      (a < b) : False
      The a.x() is not less than b.x()

  The static definitions 'less_xyz', 'less_yzx', 'less_zxy'
  instead use comparison of the next components as tie breakers
  (like a lexicographic sort).
  - same type of definition that Pair and Tuple2 use.

      a = (-2.2 -3.3 -4.4)
      b = (-2.2 3.3 4.4)

      vector::less_xyz(a, b) : True
      The a.x() == b.x(), but a.y() < b.y()

   They can be used directly as comparators:

      pointField points = ...;

      std::sort(points.begin(), points.end(), vector::less_zxy);

ENH: make VectorSpace named access methods noexcept.

   Since the addressing range is restricted to enumerated offsets
   (eg, X/Y/Z) into storage, always remains in-range.
   Possible to make constexpr with future C++ versions.

STYLE: VectorSpace 'operator>' defined using 'operator<'

- standard rewriting rule
2022-10-31 18:36:14 +01:00
9db3547bd3 ENH: support optional average value when reading rawIOField
ENH: simplify bookkeeping within MappedFile
2022-10-31 18:36:14 +01:00
24ffc5236d COMP: simplify openmp handling (#2617)
- remove old, unneeded -DUSE_OMP define.
- wmake -no-openmp option to add '~openmp' to WM_COMPILE_CONTROL

ENH: add bash completion handling for wmake
2022-10-26 18:04:56 +02:00
61deacd24d ENH: boundBox improvements (#2609)
- construct boundBox from Pair<point> of min/max limits,
  make sortable

- additional bounding box intersections (linePointRef), add noexcept

- templated access for boundBox hex-corners
  (used to avoid temporary point field).
  Eg, unrolled plane/bound-box intersection with early exit

- bounding box grow() to expand box by absolute amounts
  Eg,

      bb.grow(ROOTVSMALL);   // Or: bb.grow(point::uniform(ROOTVSMALL));
  vs
      bb.min() -= point::uniform(ROOTVSMALL);
      bb.max() += point::uniform(ROOTVSMALL);

- treeBoundBox bounding box extend with two or three parameters.
  The three parameter version includes grow(...) for reduced writing.
  Eg,

      bb = bb.extend(rndGen, 1e-4, ROOTVSMALL);

  vs
      bb = bb.extend(rndGen, 1e-4);
      bb.min() -= point::uniform(ROOTVSMALL);
      bb.max() += point::uniform(ROOTVSMALL);

  This also permits use as const variables or parameter passing.
  Eg,

      const treeBoundBox bb
      (
          treeBoundBox(some_points).extend(rndGen, 1e-4, ROOTVSMALL)
      );
2022-10-12 13:19:44 +02:00
81b1c5021f ENH: provide low-level bound box() methods for meshShapes
- box method on meshShapes (cell,edge,face,triangle,...)
  returns a Pair<point>.

  Can be used directly without dependency on boundBox,
  but the limits can also passed through to boundBox.

- Direct box calculation for cell, which walks the cell-faces and
  mesh-faces.  Direct calculation for face (#2609)
2022-10-12 12:54:39 +02:00
d5cdc60a54 BUG: processorMeshes removeFiles does not remove collated (fixes #2607)
ENH: extend rmDir to handle removal of empty directories only

- recursively remove directories that only contain other directories
  but no other contents. Treats dead links as non-content.
2022-10-11 17:58:22 +02:00
779a2ca084 ENH: adjust fileName methods for similarity to std::filesystem::path
- stem(), replace_name(), replace_ext(), remove_ext() etc

- string::contains() method - similar to C++23 method

  Eg,
      if (keyword.contains('/')) ...
  vs
      if (keyword.find('/') != std::string::npos) ...
2022-10-11 17:58:22 +02:00
0c89f38312 ENH: additional DimensionedField, GeometricField factory methods
- construct based on db and mesh information from an existing field

- check movable() instead of isTmp() when reusing fields

STYLE: isolate check for reuse GeometricField into Detail namespace
2022-10-06 12:54:06 +02:00