Commit Graph

5110 Commits

Author SHA1 Message Date
80b0f5f740 DOC: adjust wording
STYLE: replace stray 'Web:' entries with 'Website:'
2022-06-21 13:50:40 +02:00
e96990c8bf DOC: Doxygen corrections 2022-06-17 11:49:23 +01:00
c8538ee49e ENH: Adding iterative solver to S2S equations
ENH: Adding report after matrix smoothing
2022-06-15 12:25:58 +00:00
1e37ab4b44 DOC: update dictionary doxygen 2022-06-13 16:06:01 +02:00
b0b9aa6def ENH: subModelBase - return bool from getModelProperty to identify read success 2022-06-13 14:09:00 +01:00
675c168014 Merge remote-tracking branch 'origin/master' into develop.mol 2022-06-10 17:57:05 +02:00
7b5cfbd1b0 COMP: Gcc 11+ potential fix - see #2434 2022-06-09 12:58:22 +02:00
a7d01a7d43 ENH: writeFile: add writeValue function 2022-06-09 09:32:53 +00:00
9a75ce8434 ENH: support coordinateSystem/transform for sampled planes
- previously only defined for cell-cutting version, now for
  iso-surface version too

TUT: remove old transform/coordinateSystem syntax
2022-06-08 16:43:05 +02:00
fbaadf3a94 ENH: make 'planeType' optional for dictionary construct of a plane
- simpler to write for sampled cutting planes etc.
  For example,

      slice
      {
          type        cuttingPlane;
          point       (0 0 0);
          normal      (0 0 1);
          interpolate true;
      }

  instead of

      slice
      {
          type        cuttingPlane;
          planeType   pointAndNormal;
          pointAndNormalDict
          {
              point   (0 0 0);
              normal  (0 0 1);
          }
          interpolate true;
      }

STYLE: add noexcept to some plane methods
2022-06-08 16:43:05 +02:00
7184de50df ENH: simplify coordinate rotation specification (#2505)
- can specify rotations that are not "axes" in a compact form:

      transform
      {
          origin  (0 0 0);
          rotation none;
      }

      transform
      {
          origin  (0 0 0);
          rotation axisAngle;
          axis    (0 0 1);
          angle   45;
      }

   An expanded dictionary form also remains possible:

      transform
      {
          origin  (0 0 0);
          rotation
          {
              type  axisAngle;
              axis  (0 0 1);
              angle 45;
          }
      }

STYLE: verbose deprecation for "coordinateRotation" keyword

- the "coordinateRotation" keyword was replaced by the "rotation"
  keyword (OpenFOAM-v1812 and later) but was handled silently.
  Now elevated to non-silent.

STYLE: alias lookups "axesRotation", "EulerRotation", "STARCDRotation"

- these warn and report the equivalent short form, which aids in
  upgrading. Previously had silent lookups.
2022-06-07 17:25:30 +02:00
460b29b8c7 STYLE: missing quote when reporting selection table aliases 2022-06-07 15:01:40 +02:00
264c09c365 Merge remote-tracking branch 'origin/master' into develop 2022-06-03 14:11:00 +02:00
68599d552d ENH: minor code cleanup for SHA1 calculation
- append single character
- make append() methods void: methods are never chained anyhow
- refactor digest comparison (code reduction)

COMP: add overflow handling for OSHA1stream
2022-06-03 11:18:08 +02:00
40cadfd2f2 COMP: references to temporaries
COMP: include <limits>
2022-06-03 10:04:38 +02:00
91198eaf6a COMP: gcc-12 buffer check bypasses xsputn (#2481, #2496)
- add overflow() method to the SHA1 streambuf. Previously could rely
  on xsputn for adding to sha1 content, but streams now check pptr()
  first to test for the buffering range and thus overflow() is needed.
2022-06-03 10:04:35 +02:00
a465e4db85 ENH: support Euler rotation rollPitchYaw/yawPitchRoll ordering
- can be more intuitive to specify for some cases:

      rotation
      {
          type    euler;
          order   rollPitchYaw;
          angles  (0 20 45);
      }

- refactor starcd rotation to reuse Euler ZXY ordering
  (code reduction)

ENH: add -rotate-x, -rotate-y, -rotate-z for transformPoints etc

- easier to specify for simple rotations
2022-06-02 16:47:40 +02:00
eba7a485ba ENH: quaternion ROLL_PITCH_YAW and YAW_PITCH_ROLL aliases/lookups
COMP: define labelSphericalTensor::I

- remove spurious 'labelI' global constant (labelSphericalTensor::I)

STYLE: replace use of deprecated Tensor vectorComponent

STYLE: avoid bit-wise assignment of bool (VectorSpace compare ops)
2022-06-02 11:14:10 +02:00
8b63b8cdfe ENH: add hashedWordList find, appendUniq methods
- aligns calling signatures with wordList, for possible future
  replacement

- drop construct from const char** (can use initializer_list instead)

ENH: replace hashedWordList with plain wordList in triSurfaceLoader

- additional hashing optimisation (and overhead) is not worth it for
  the comparatively small lists of surfaces used.
2022-06-02 11:14:10 +02:00
1ef855cf0b ENH: QRMatrix: refactor the QR decomposition algorithms (fixes #2212) 2022-05-31 16:11:20 +00:00
cf492d42a1 ENH: Matrix: improve row access in inner/outer products 2022-05-31 16:11:20 +00:00
98b4779793 ENH: Rectangular/SquareMatrix: add move assignment 2022-05-31 16:11:20 +00:00
96cb473305 ENH: Matrix: add non-conjugate transpose function 2022-05-31 16:11:20 +00:00
d2e10bca40 ENH: support exprField specification for SemiImplicitSource
- this allows more flexibility when defining the location or intensity
  of sources.

  For example,

  {
      type            scalarSemiImplicitSource;
      volumeMode      specific;
      selectionMode   all;

      sources
      {
          tracer0
          {
              explicit
              {
                  type       exprField;

                  functions<scalar>
                  {
                      square
                      {
                          type square;
                          scale 0.0025;
                          level 0.0025;
                          frequency 10;
                      }
                  }

                  expression
                  #{
                      (hypot(pos().x() + 0.025, pos().y()) < 0.01)
                    ? fn:square(time())
                    : 0
                  #};
              }
          }
      }
  }

ENH: SemiImplicitSource: handle "sources" with explicit/implicit entries

- essentially the same as injectionRateSuSp with Su/Sp,
  but potentially clearer in purpose.

ENH: add Function1 good() method to define if function can be evaluated

- for example, provides a programmatic means of avoiding the 'none'
  function
2022-05-31 13:04:39 +02:00
ef743147ea GIT: relocate coordinate from meshTools -> OpenFOAM
- supports use of coordinate systems in fileFormats, surfMesh etc.

GIT: remove remnant dependency check placeholders
2022-05-31 10:05:17 +02:00
21234ae296 ENH: support zip/unzip rows of symmTensor (#2487)
- was previously only implemented for tensor
2022-05-27 17:58:37 +02:00
525db80889 BUG: zones inGroup entry not read from dictionary (fixes #2485)
ENH: add ZoneMesh groupNames method
2022-05-27 15:33:28 +02:00
0efa5f062a ENH: DimensionedFields::New static constructors 2022-05-27 14:15:12 +02:00
93dcf732dd COMP: make ZeroConstant clonable 2022-05-27 14:15:03 +02:00
ba10afea77 ENH: add 'filtered' polyMesh regionName() method
- in various situations with mesh regions it is also useful to
  filter out or remove the defaultRegion name (ie, "region0").

  Can now do that conveniently from the polyMesh itself or as a static
  function. Simply use this

      const word& regionDir = polyMesh::regionName(regionName);

  OR  mesh.regionName()

  instead of

      const word& regionDir =
      (
           regionName != polyMesh::defaultRegion
         ? regionName
         : word::null
      );

  Additionally, since the string '/' join operator filters out empty
  strings, the following will work correctly:

      (polyMesh::regionName(regionName)/polyMesh::meshSubDir)

      (mesh.regionName()/polyMesh::meshSubDir)
2022-05-27 14:10:31 +02:00
77ab7510a8 ENH: dimensionedScalar: add stabilise function 2022-05-27 12:51:51 +01:00
15535b8970 ENH: mapDistributeBase compaction based on a subset of elements (#2436)
- now have both compactData(),compactLocalData(), compactRemoteData()
  depending on where the compaction information is actually known.

  The compactData() performs a consistent union of local and remote
  values, which eliminates the danger of mapping to non-existent
  locations but does require a double communication to setup.
  Typically needed for point maps (for example).

  The compactLocalData() and compactRemoteData() work on the
  assumption that the source or target values are sufficent for
  creating unique compact maps.

  Can be used, for example, when compacting cell maps since there is
  no possibility of a source cell being represented on different
  target processors (ie, each cell is unique and only occurs once).

  The existing compact() is equivalent to compactRemoteData()
  and is now simply a redirect.

- use bitSet for defining compaction, but the existing compact()
  continues to use a boolList (for code compatibility).

BUG: compaction in non-parallel mode didn't compact anything.

STYLE: compact ascii output for procAddressing
2022-05-25 13:12:38 +00:00
3b6761afed ENH: code modernization for decompose/reconstruct
- simplify procAddressing read/write

- avoid accessing points in faMeshReconstructor.
  Can rely on the patch meshPoints (labelList), which does not need
  access to a pointField

- report number of points on decomposed mesh.
  Can be useful additional information.
  Additional statistics for finite area decomposition

- provide bundled reconstructAllFields for various reconstructors

- remove reconstructPar checks for very old face addressing
  (from foam2.0 - ie, older than OpenFOAM itself)

- bundle all reading into fieldsDistributor tools,
  where it can be reused by various utilities as required.

- combine decomposition fields as respective fieldsCache
  which eliminates most of the clutter from decomposePar
  and similfies reuse in the future.

STYLE: remove old wordHashSet selection (deprecated in 2018)

BUG: incorrect face flip handling for faMeshReconstructor

- a latent bug which is not yet triggered since the faMesh faces are
  currently only definable on boundary faces (which never flip)
2022-05-25 13:12:38 +00:00
823641ab9b ENH: refactored mesh movePoints to enable meshPhi update in the fvGeometryScheme 2022-05-19 15:48:31 +00:00
0dc1faa2be ENH: primitiveMeshTools - added partial geometry update functions
Added new functions:
- updateFaceCentresAndAreas : update faces in faceIDs list
- updateCellCentresAndVols  : update cells in cellIDs list
2022-05-19 15:48:31 +00:00
ef14a415a9 ENH: ListOps - added uniqueSort function 2022-05-19 15:48:31 +00:00
95e2a2e887 ENH: add sorted() to objectRegistry and IOobjectList
- returns UPtrList view (read-only or read/write) of the objects

- shorter names for IOobject checks: hasHeaderClass(), isHeaderClass()

- remove unused IOobject::isHeaderClassName(const word&) method.
  The typed versions are preferable/recommended, but can still check
  directly if needed:

     (io.headerClassName() == "foo")
2022-05-17 17:35:51 +02:00
f1098673c0 STYLE: compare Dynamic{Field,List} by casting address to common class
- previously used cdata() comparison but that tends to obscure what is
  going on
2022-05-17 17:35:51 +02:00
87f3866f20 ENH: support move append lists for PtrList and UPtrList 2022-05-17 17:35:51 +02:00
60e07d1f93 ENH: refine mapDistribute methods
- additional distribute/reverseDistribute with specified commsType.
  Improves flexibility.

- distribute with nullValue

- support move construct mapDistribute from mapDistributeBase

- refactor handling of schedules (as whichSchedule method) to
  simplify code.

- renumberMap helper for working with compact sub maps
  and renumberVisit for handling walk-ordered compaction.

COMP: make mapDistributeBase data private

- accessor methods are available - direct access is unnecessary
- mapDistribute : inherit mapDistributeBase constructors

STYLE: use List<labelPair>::null() for schedule placeholders

- clearer that they are doing nothing
2022-05-17 17:35:51 +02:00
ae0ef3efed COMP: make Function1 writeEntries virtual 2022-05-17 17:35:51 +02:00
6cafe441f8 ENH: valueAverageBase - added support for averaging label values 2022-05-17 16:20:32 +01:00
5d9456187d ENH: zero tag for constructing various IO types
- for int64 compilations this disambiguates between '0' as int32 (size)
  or as bool 'false' for local processor validity

  Eg,

     IOList list(io, 0);     <- With label-size 64: is this bool or label?
     IOList list(io, Zero);  <- Size = 0 (int32/int64), not a bool
2022-05-12 13:47:03 +02:00
812f4c4f09 BUG: globalIndex fails non-blocking gather of indirect list (fixes #2467)
- for indirect lists we use element-wise output streaming and read
  back as a regular list. This approach cannot however work with
  non-blocking mode - the receive buffers will simply not be filled
  before attempting to read from them.

  For contiguous data, the lowest overhead solution is to locally
  flatten the indirect list and use the regular gather routines
  for non-blocking mode. For non-contiguous data, can continue to
  use the element-wise output, but cannot use non-blocking for it.

STYLE: use non-blocking consistently as default for globalIndex gather(s)

- most of the front-facing code was already using non-blocking,
  but there were a few low-level routines defaulting to scheduled
  (but never relied upon in the code).
2022-05-12 11:29:38 +02:00
0ed0856593 COMP: avoid Istream/List operator() ambiguity (gcc-4.8.5)
- introduced UList<bool>::operator()(label) as part of bf0b3d8872
  but with gcc-4.8.5 this participates in operator resolution even
  for non-bool lists!!
  Partial revert until this predicate handling is really required.
2022-05-11 08:57:05 +02:00
dd560a6e3c ENH: reduce allocations/sorting when setting time (#2461)
- use DynamicList instead of List in the cache, which reduces the
  number of allocations occuring each time.

- since the cached times are stored in sorted order, first check if the
  new time is greater than the last list entry. Can then simply append
  without performing a binary search and can obviously also skip any
  subsequent sorting.

STYLE: add noexcept to Instant methods, declare in header (like Tuple2)
2022-05-10 21:16:09 +02:00
42de624344 ENH: consolidate processorTopology handling for volume and area meshes
- relocate templating to factory method 'New'.
  Adds provisions for more general re-use.

- expose processor topology in globalMesh as topology()

- wrap proc->patch lookup as processorTopology::procPatchLookup method
  (failsafe). May consider using Map<label> for its storage in the
  future.
2022-05-10 10:47:01 +02:00
dea2f23afd COMP: combine uindirectPrimitivePatch.H into indirectPrimitivePatch.H
- similarly combine typedef headers for primitiveFacePatch,
  foamVtkUIndPatchWriter, foamVtkUIndPatchGeoFieldsWriter etc
  (reduce file clutter)
2022-05-10 10:47:01 +02:00
33693f32b6 ENH: wrapped IOField, IOList, IOmapDistributePolyMesh
- Uses a refPtr to reference external content.
  Useful (for example) when writing data without copying.
  Reading into external locations is not implemented
  (no current requirement for that).

    * IOFieldRef -> IOField
    * IOListRef -> IOList
    * IOmapDistributePolyMeshRef -> IOmapDistributePolyMesh

  Eg,

    labelList addressing = ...;

    io.rename("cellProcAddressing");
    IOListRef<label>(io, addressing).write();

  Or,
    primitivePatch patch = ...;
    IOFieldRef<vector>(io, patch.localPoints()).write();
2022-05-10 10:47:01 +02:00
036abb8ecb BUG: bitSet &= operation does not mask out non-overlapping (#2456)
- the values from non-overlapping blocks were simply ignored,
  which meant that ('111111111111' & '111111') would not mask out
  the unset values at all.

- similar oddities in other operations (|=, ^= etc)
  where the original implementation tried hard to avoid touching the
  sizing at all, but now better resolved as follows:

  - '|=' : Set may grow to accommodate new 'on' bits.
  - '^=' : Set may grow to accommodate new 'on' bits.
  - '-=' : Never changes the original set size.
  - '&=' : Never changes the original set size.
           Non-overlapping elements are considered 'off'.

  These definitions are consistent with HashSet behaviour
  and also ensures that (a & b) == (b & a)

ENH: improve short-circuiting within bitSet ops

- in a few places can optimise by checking for none() instead of
  empty() and avoid unnecessary block operations.

ENH: added bitSet::resize_last() method

- as the name says: resizes to the last bit set.
  A friendlier way of writing `resize(find_last()+1)`
2022-05-10 10:47:01 +02:00