Commit Graph

729 Commits

Author SHA1 Message Date
aa7cce912c STYLE: eliminate unnecessary DIY version of cellPoints(label) 2018-11-01 14:23:21 +00:00
3366a16b35 ENH: pass through format options from sampledSurface to proxy writers
- preliminary work to #1057

- add dictionary selectable format (ascii|binary) to
  VTKsurfaceFormat, VTPsurfaceFormat
2018-11-01 14:09:53 +00:00
097e54a74f BUG: isoSurfaceCell: pre-filtering of cells misses lopping off a corner. Fixes #1062. 2018-11-01 13:06:06 +00:00
6ba6d7466d ENH: general consistency and documentation update for surface writers 2018-10-19 19:26:05 +02:00
d63b4cd4f4 ENH: minor changes to rationalize sampledSurface
- make hasFaceId a top-level virtual method and remove keepIds
  equivalent from sampledTriSurfaceMesh. This makes the property
  available without casting.

- New sampling type 'none'.
  Can be used to temporarily disable a sampling surface definition,
  or to provide boilerplate for overwriting later.
2018-10-19 16:02:44 +02:00
07dafe7b0b STYLE: use range-for when looping dictionary entries.
- as part of the cleanup of dictionary access methods (c6520033c9)
  made the dictionary class single inheritance from IDLList<entry>.

  This eliminates any ambiguities for iterators and allows
  for simple use of range-for looping.

  Eg,
      for (const entry& e : topDict))
      {
          Info<< "entry:" << e.keyword() << " is dict:" << e.isDict() << nl;
      }

   vs

      forAllConstIter(dictionary, topDict, iter))
      {
          Info<< "entry:" << iter().keyword()
              << " is dict:" << iter().isDict() << nl;
      }
2018-10-19 13:08:24 +02:00
3b74512231 ENH: cleanup of Enum class
- more dictionary-like methods, enforce keyType::LITERAL for all
  lookups to avoid any spurious keyword matching.

- new readEntry, readIfPresent methods

- The get() method replaces the now deprecate lookup() method.

- Deprecate lookupOrFailsafe()
  Failsafe behaviour is now an optional parameter for lookupOrDefault,
  which makes it easier to tailor behaviour at runtime.

- output of the names is now always flatted without line-breaks.
  Thus,

     os << flatOutput(someEnumNames.names()) << nl;
     os << someEnumNames << nl;

  both generate the same output.

- Constructor now uses C-string (const char*) directly instead of
  Foam::word in its initializer_list.

- Remove special enum + initializer_list constructor form since
  it can create unbounded lookup indices.

- Removd old hasEnum, hasName forms that were provided during initial
  transition from NamedEnum.

- Added static_assert on Enum contents to restrict to enum or
  integral values.  Should not likely be using this class to enumerate
  other things since it internally uses an 'int' for its values.

  Changed volumeType accordingly to enumerate on its type (enum),
  not the class itself.
2018-10-18 12:57:32 +02:00
8fabc32539 ENH: simplify objectRegistry access names (issue #322)
New name:  findObject(), cfindObject()
  Old name:  lookupObjectPtr()

      Return a const pointer or nullptr on failure.

  New name:  findObject()
  Old name:  --

      Return a non-const pointer or nullptr on failure.

  New name:  getObjectPtr()
  Old name:  lookupObjectRefPtr()

      Return a non-const pointer or nullptr on failure.
      Can be called on a const object and it will perform a
      const_cast.

- use these updated names and functionality in more places

NB: The older methods names are deprecated, but continue to be defined.
2018-10-17 16:44:10 +02:00
496e1cd0d2 STYLE: enforce Cartesian transform (issue #1027)
- searchable surfaces
- pointToPointPlanarInterpolation
- sampled planes
- surfaceMeshConvert, surfaceMeshExport, surfaceMeshImport
2018-10-01 22:55:59 +02:00
b17bcd67b7 ENH: correct suspicious coordinate system conversions (issue #1027)
- arraySet :
     was translate + transform
     now use globalPosition (== transform + translate).

     Explicitly limit to Cartesian coordinate system for clarity.
2018-10-01 17:10:35 +02:00
6697bb4735 ENH: improve, simplify, rationalize coordinate system handling (issue #863)
Previously the coordinate system functionality was split between
coordinateSystem and coordinateRotation. The coordinateRotation stored
the rotation tensor and handled all tensor transformations.

The functionality has now been revised and consolidated into the
coordinateSystem classes. The sole purpose of coordinateRotation
is now just to provide a selectable mechanism of how to define the
rotation tensor (eg, axis-angle, euler angles, local axes) for user
input, but after providing the appropriate rotation tensor it has
no further influence on the transformations.

--

The coordinateSystem class now contains an origin and a base rotation
tensor directly and various transformation methods.

  - The origin represents the "shift" for a local coordinate system.

  - The base rotation tensor represents the "tilt" or orientation
    of the local coordinate system in general (eg, for mapping
    positions), but may require position-dependent tensors when
    transforming vectors and tensors.

For some coordinate systems (currently the cylindrical coordinate system),
the rotation tensor required for rotating a vector or tensor is
position-dependent.

The new coordinateSystem and its derivates (cartesian, cylindrical,
indirect) now provide a uniform() method to define if the rotation
tensor is position dependent/independent.

The coordinateSystem transform and invTransform methods are now
available in two-parameter forms for obtaining position-dependent
rotation tensors. Eg,

      ... = cs.transform(globalPt, someVector);

In some cases it can be useful to use query uniform() to avoid
storage of redundant values.

      if (cs.uniform())
      {
          vector xx = cs.transform(someVector);
      }
      else
      {
          List<vector> xx = cs.transform(manyPoints, someVector);
      }

Support transform/invTransform for common data types:
   (scalar, vector, sphericalTensor, symmTensor, tensor).

====================
  Breaking Changes
====================

- These changes to coordinate systems and rotations may represent
  a breaking change for existing user coding.

- Relocating the rotation tensor into coordinateSystem itself means
  that the coordinate system 'R()' method now returns the rotation
  directly instead of the coordinateRotation. The method name 'R()'
  was chosen for consistency with other low-level entities (eg,
  quaternion).

  The following changes will be needed in coding:

      Old:  tensor rot = cs.R().R();
      New:  tensor rot = cs.R();

      Old:  cs.R().transform(...);
      New:  cs.transform(...);

  Accessing the runTime selectable coordinateRotation
  has moved to the rotation() method:

      Old:  Info<< "Rotation input: " << cs.R() << nl;
      New:  Info<< "Rotation input: " << cs.rotation() << nl;

- Naming consistency changes may also cause code to break.

      Old:  transformVector()
      New:  transformPrincipal()

  The old method name transformTensor() now simply becomes transform().

====================
  New methods
====================

For operations requiring caching of the coordinate rotations, the
'R()' method can be used with multiple input points:

       tensorField rots(cs.R(somePoints));

   and later

       Foam::transformList(rots, someVectors);

The rotation() method can also be used to change the rotation tensor
via a new coordinateRotation definition (issue #879).

The new methods transformPoint/invTransformPoint provide
transformations with an origin offset using Cartesian for both local
and global points. These can be used to determine the local position
based on the origin/rotation without interpreting it as a r-theta-z
value, for example.

================
  Input format
================

- Streamline dictionary input requirements

  * The default type is cartesian.
  * The default rotation type is the commonly used axes rotation
    specification (with e1/e2/3), which is assumed if the 'rotation'
    sub-dictionary does not exist.

    Example,

    Compact specification:

        coordinateSystem
        {
            origin  (0 0 0);
            e2      (0 1 0);
            e3      (0.5 0 0.866025);
        }

    Full specification (also accepts the longer 'coordinateRotation'
    sub-dictionary name):

        coordinateSystem
        {
            type    cartesian;
            origin  (0 0 0);

            rotation
            {
                type    axes;
                e2      (0 1 0);
                e3      (0.5 0 0.866025);
            }
        }

   This simplifies the input for many cases.

- Additional rotation specification 'none' (an identity rotation):

      coordinateSystem
      {
          origin  (0 0 0);
          rotation { type none; }
      }

- Additional rotation specification 'axisAngle', which is similar
  to the -rotate-angle option for transforming points (issue #660).
  For some cases this can be more intuitive.

  For example,

      rotation
      {
          type    axisAngle;
          axis    (0 1 0);
          angle   30;
      }
  vs.
      rotation
      {
          type    axes;
          e2      (0 1 0);
          e3      (0.5 0 0.866025);
      }

- shorter names (or older longer names) for the coordinate rotation
  specification.

     euler         EulerRotation
     starcd        STARCDRotation
     axes          axesRotation

================
  Coding Style
================
- use Foam::coordSystem namespace for categories of coordinate systems
  (cartesian, cylindrical, indirect). This reduces potential name
  clashes and makes a clearer declaration. Eg,

      coordSystem::cartesian csys_;

  The older names (eg, cartesianCS, etc) remain available via typedefs.

- added coordinateRotations namespace for better organization and
  reduce potential name clashes.
2018-10-01 13:54:10 +02:00
64c3e484bb STYLE: add nBoundaryFaces() method to primitiveMesh
- nBoundaryFaces() is often used and is identical to
  (nFaces() - nInternalFaces()).

- forward the mesh nInternalFaces() and nBoundaryFaces() to
  polyBoundaryMesh as nFaces() and start() respectively,
  for use when operating on a polyBoundaryMesh.

STYLE:

- use identity() function with starting offset when creating boundary maps.

     labelList map
     (
         identity(mesh.nBoundaryFaces(), mesh.nInternalFaces())
     );

  vs.

     labelList map(mesh.nBoundaryFaces());
     forAll(map, i)
     {
         map[i] = mesh.nInternalFaces() + i;
     }
2018-09-27 10:17:30 +02:00
47519b2e04 ENH: new sampling type "surfaceCut"
- an alternative to distanceSurface (with distance zero) that uses
  a cell cutting approach instead of an iso-surface.
2018-09-18 08:40:46 +02:00
4aa94bd1d7 ENH: improve distanceSurface handling (issue #1012)
- 'signed' input parameter only mandatory for distance > 0.
  A distance <= 0 is always signed and the input parameter is ignored.

- Use normal distance when distance == 0. This has no effect when
  the surface has no open edges, but improves on rounding issues
  around the zero crossing when the surface has open edges.

  This may still need future revisiting.
2018-09-19 14:18:57 +02:00
9973c378b9 ENH: refactor cutting-plane cell selection
- avoid duplicate code by relocating cellZone selection and bounding box
  sub-selection into cuttingPlane and cuttingSurfaceBaseSelection.
  Allows reuse by inherited classes (sampledPlane, surfMeshSamplePlane).
2018-09-14 11:18:44 +02:00
a8ef9e9742 ENH: make cuttingPlane cell walker an algorithm
- takes two general actions:
  1. orient edge in canonical direction (positive gradient) and detect
     any edge intersection.
  2. edge intersection alpha (0-1)

- refactor into a cuttingSurfaceBase intermediate class with the
  actions as templated parameters rather than function pointers. This
  allows the use of lambda functions with captures from the caller.
2018-09-14 09:34:14 +02:00
7cf232ceec STYLE: split up cuttingPlane source files 2018-09-14 09:19:32 +02:00
8122a8a70f ENH: orient cut plane faces based on the (oriented) edge gradient
- Since the local edges are oriented according to the gradient,
  they can also be used to determine the correct face orientation.

This generalizes the algorithm for future reuse.
2018-09-12 11:16:30 +02:00
4d6f0498d6 ENH: use vector::normalise and VectorSpace::normalised for clarity 2018-08-10 15:18:29 +02:00
c1964d7807 ENH: distinguish between face areaNormal/unitNormal in the code 2018-08-10 15:43:06 +02:00
dd9ecd4988 ENH: add missing Hash function for List/UList (issue #966)
- there were previously no hashing mechanisms for lists so they
  would fall back to the definition for primitives and hash the
  memory location of the allocated List object.

- provide a UList::Hash<> sub-class for inheritance, and also a global
  specialization for UList<T>, List<T> such that the hash value for
  List<List<T>> cascades properly.

- provide similar function in triFace to ensure that it remains
  similar in behaviour to face.

- added SymmHash to Pair, for use when order is unimportant.

STYLE: use string::hash() more consistently

- no particular reason to use Hash<word>() which forwards to
  string::hash() anyhow
2018-08-08 23:54:27 +02:00
7bb68b4dea ENH: new cuttingPlane cutting scheme
- takes a direct approach of determining which cells are cut and walks
  the cell faces directly to build the resulting surface.

- better handling of corner cases.
  * Avoids redundant points when the cut passes exactly through a
    mesh point.
  * Supresses generation of duplicates faces when the plane cut
    coincides exactly with a mesh face.

- for severely concave cells where the plane cuts a face multiple times
  there is currently no remedial action taken, except to note the
  failure and unwind the insertion of the corresponding points and
  faces.
2018-08-07 22:23:16 +02:00
544941b961 ENH: support zone and zones for sampled cutting planes, sampledIsoSurface
- rework to use bitSet for more flexibility
2018-08-06 18:45:10 +02:00
de2eed3e7d ENH: additional methods and improvements to plane
- signedDistance() method is like distance() but retains
  the positive/negative sign for the side of the plane.

- the sign() method returns the sign as -1,0,+1 integer for
  classification purposes where it is important to distinguish between
  a zero value and a positive value (eg, for cutting). Optional
  tolerance can be supplied to round for zero.

- refactor and inlined simple and frequently used methods.

- add boundBox faceCentre() method, which can be useful for creating
  clipping planes from a bounding box.
  Relocated treeBoundBox faceNormals to boundBox since they apply
  equally there - the meaning of the faces (x-min, x-max, etc)
  is the same, even if the point addressing for the faces differs.
2018-08-03 23:17:49 +02:00
84e2df4994 ENH: added ZoneMesh indices(), selection() with wordRes matcher
- rationalized code dealing with extraction of name or indices from
  coordinateSystems, polyBoundaryMesh, faBoundaryMesh, fvBoundaryMesh,
  ZoneMesh to use internal implementations that allow direct
  searching/matching without building an intermediate list of names.

- simpler and more efficient handling of patch group matching.
2018-08-03 22:40:19 +02:00
c0c59b9abd ENH: force tetBasePtIs() into existence before isoSurfaceCell cutting loop
- ensures that things stay synchronized when the processor domains
  have unequal looping.
2018-08-03 19:34:26 +02:00
f00c7a655c COMP: rename dictionary::read<T> to dictionary::readEntry<T>
- avoids compiler ambiguity when virtual methods such as
  IOdictionary::read() exist.

- the method was introduced in 1806, and was thus not yet widely used
2018-07-30 15:52:40 +02:00
dbe0db1d9a ENH: fvMeshSubset improvements (issue #951)
- what was previously termed 'setLargeCellSubset()' is now simply
  'setCellSubset()' and supports memory efficient interfaces.

  The new parameter ordering avoids ambiguities caused by default
  parameters.

  Old parameter order:

      setLargeCellSubset
      (
          const labelList& region,
          const label currentRegion,
          const label patchID = -1,
          const bool syncCouples = true
      );

  New parameter order:

      setCellSubset
      (
          const label regioni,
          const labelUList& regions,
          const label patchID = -1,
          const bool syncCouples = true
      );

   And without ambiguity:

      setCellSubset
      (
          const labelUList& selectedCells,
          const label patchID = -1,
          const bool syncCouples = true
      );

- support bitSet directly for specifying the selectedCells for
  memory efficiency and ease of use.

- Additional constructors to perform setCellSubset() immediately,
  which simplifies coding.

  For example,

      meshParts.set
      (
          zonei,
          new fvMeshSubset(mesh, selectedCells)
      );

  Or even

      return autoPtr<fvMeshSubset>::New(mesh, selectedCells);
2018-07-25 18:58:00 +02:00
18b134319d ENH: handling of open edges distanceSurface at 0 (issue #948)
Some special adjustments are undertaken for distance = 0.

- With the isoSurfaceCell algorithm is used, additional checks for open
  surfaces edges are used to limit the extend of resulting distance
  surface. The resulting surface elements will not, however, contain
  partial cell coverage.

- Always treated as signed (ignoring the input value), since it is
  nearly impossible to generate any surface otherwise.
2018-07-23 15:18:20 +02:00
3328ec31dd ENH: consistency in handling of ensight timeDir (issue #919) 2018-07-05 13:53:59 +01:00
a592ebc073 STYLE: avoid unrestricted dictionary lookup in conversion, sampling, surfMesh
- aids with detection of excess tokens (issue #762)

- deprecated dictionary::operator[] in favour of the lookup() method
  which offers more flexibilty and clarity of purpose.
  Additionally, the read<> and get<> forms should generally be used
  instead anyhow.
2018-07-18 13:33:00 +02:00
64855e8c12 STYLE: patchCloudSet: typo in header 2018-07-12 17:31:01 +01:00
7b8e2b1a18 Merge remote-tracking branch 'origin/master' into develop 2018-07-10 16:42:59 +01:00
7156b40fb8 ENH: ensight: allow use for non-time directory based field. Fixes #919. 2018-07-05 13:53:59 +01:00
6e35bcda70 ENH: Updated config for release v1806 2018-06-28 12:56:00 +01:00
f4d3c071ff Merge branch 'feature-processorLOD' into 'develop-pre-release'
Feature processor level of detail (LOD)

See merge request Development/OpenFOAM-plus!210
2018-06-25 08:55:20 +01:00
e0db37f043 ENH: support rhoRef for derived surfMesh sampled fields (issue #898) 2018-06-22 16:57:30 +02:00
1c64911367 ENH: Updated meshToMesh to be able to use the new processorLOD 2018-06-20 07:57:25 +01:00
abb597359f ENH: Updated the boundaryDataSurfaceWriter to use a plain list for the points file 2018-06-22 15:24:07 +01:00
1f953b807c ENH: use double for VTK legacy output (issue #891)
- some paraview versions (eg, on windows) don't support float, only double.

  This mostly affected the vtkSurfaceWriter.

  The foamToVTK is also affected, but since it also supports the XML
  output formats (vtp, vtu) these can be used instead.
2018-06-21 10:24:04 +02:00
813a0500e2 BUG: incorrect order for VTK symmTensor (fixes #892)
- affected manually generated legacy output (vtkSetWriter, vtkSurfaceWriter)

- the order emitted by vtkSetWriter remains, but needs to revisited again.
2018-06-21 09:38:25 +02:00
d016590bbc ENH: AMIInterpolation - updated to perform face triangulation once only; code clean-up 2017-08-18 14:09:34 +01:00
337aca5fd5 ENH: reduce some isoSurfaceCell regularise failures (closes #870)
- when the iso-surface (eg, a cut plane, or distanceSurface) passes
  exactly through the cell centre, zero-sized triangles can occur.
  These should be merged away.
2018-06-14 14:31:07 +02:00
c909a5df25 GIT: resolved merge conflict 2018-06-13 14:20:18 +01:00
67310ed4ef ENH: sort cellCentre output according to global cell index (issue #869)
- replace SortableList with sortedOrder, to reduce some overhead
2018-06-13 11:08:58 +02:00
b2b77c9c13 ENH: add 'cellCentre' sampledSet (issue #869)
- samples on cell centres, can optionally limit based on a bounding box.
  Can be used, for example, to extract volume fields into CSV format.
2018-06-12 23:22:23 +02:00
7402cd7b5a ENH: make sampleSets setSamples movable - preliminary to issue #869
- add some more documentation
2018-06-12 19:19:10 +02:00
5561307913 ENH: improve robustness of ensight surface reader (issue #868)
- improve handling of model: ... line

- simplify parsing of xxx element: ... lines
2018-06-12 14:11:23 +02:00
7602e04ca5 BUG: error with surfMesh transfer from triSurfaceMesh (closes #862)
- face/point ownership is transferred to the surfMesh, so use these
  directly when sampling the interior.
2018-06-08 17:22:40 +02:00
84b109219a STYLE: reduced usage of Switch
- Since 'bool' and 'Switch' use the _identical_ input mechanism
  (ie, both accept true/false, on/off, yes/no, none, 1/0), the main
  reason to prefer one or the other is the output.

  The output for Switch is as text (eg, "true"), whereas for bool
  it is label (0 or 1). If the output is required for a dictionary,
  Switch may be appropriate. If the output is not required, or is only
  used for Pstream exchange, bool can be more appropriate.
2018-06-01 20:51:48 +02:00