Commit Graph

27140 Commits

Author SHA1 Message Date
b81fe70830 ENH: extend readContents IO factory methods
- support wantedType for localIOdictionary::readContents()

- add readContents() for GlobalIOList, GlobalIOField
2024-05-23 13:51:53 +02:00
bbde236be5 ENH: simpler internal handling of stderr in message streams
- delay construction of message buffer

- OStringStream count() method to test if anything has been streamed

STYLE: explicit use of std::ios_base in IOstreams

- document the return information of set flag methods
2024-05-23 13:51:53 +02:00
3b9176665f ENH: add dictionary::findStream() - symmetric with findDict()
- can be used with this type of code:

  ITstream* streamPtr = dict.findStream(name);
  if (streamPtr)
  {
      auto& is = *streamPtr;
      ...
  }

  versus:

  const entry* eptr = dict.findEntry(name);
  if (eptr && eptr->isStream())
  {
      auto& is = eptr->stream();
      ...
  }

ENH: add findStream(), streamPtr(), isStream() to dictionary search

- symmetric with findDict(), dictPtr(), isDict() methods

STYLE: use findDict() instead of found() + subDict() pairing

COMP: define is_globalIOobject trait at top of IOobject header

- more visibility, permits reuse for specializations etc.
2024-05-23 13:51:53 +02:00
6a80d4de40 ENH: reduce boundary face queries in streamFunction
BUG: streamFunction used uninitialized values for symmetry patches

- related to 8a8b5db977 changes (#3144)

ENH: improve robustness of surface field flattening

- vtk::surfaceFieldWriter
2024-05-23 13:51:53 +02:00
3f1d181b42 COMP: provide GeometricFieldFwd.H for internal/boundary/full field
- simplifies forward declarations
2024-05-23 07:41:01 +02:00
8d649d1737 FIX: additional shell quoting for foamInstallationTest (fixes #3163)
- the PATH on WSL will usually contain spaces, so it needs quoting
2024-05-22 21:00:00 +02:00
21a84bdf91 Merge remote-tracking branch 'origin/master' into develop 2024-05-22 20:59:28 +02:00
1ad1957c41 ENH: GAMG: bit more testing of procAgglom+cyclicAMI 2024-05-22 18:02:28 +01:00
4510067e63 CONFIG: bump patch level 2024-05-22 16:26:39 +02:00
8cf757daf0 BUG: GAMG: processorAgglomeration not merging proc coeffs. Fixes #3172 2024-05-22 16:26:39 +02:00
6581c5792a BUG: STL: cannot handle files > 2Gb. Fixes #3171 2024-05-22 16:25:37 +02:00
03fb8f043e ENH: cyclicAMI: restart search with large bounding box. Fixes #3175 2024-05-22 12:37:32 +01:00
45ec64e6c8 BUG: STL: cannot handle files > 2Gb. Fixes #3171 2024-05-20 12:17:04 +01:00
eb17ff1ea3 DOC: cyclicPeriodicAMI: bit of comment 2024-05-18 12:55:55 +01:00
a7538fab57 BUG: interfaceHeight: fix header writing to output files (fixes #3115) 2024-05-08 11:20:34 +01:00
4fb85d1f76 Merge branch 'update-Pstream-large-sends' into 'develop'
ENH: improve handling of multi-pass send/recv

See merge request Development/openfoam!680
2024-05-07 14:29:14 +00:00
d9c73ae489 ENH: improve handling of multi-pass send/recv (#3152)
- the maxCommsSize variable is used to 'chunk' large data transfers
  (eg, with PstreamBuffers) into a multi-pass send/recv sequence.

  The send/recv windows for chunk-wise transfers:

      iter    data window
      ----    -----------
      0       [0, 1*chunk]
      1       [1*chunk, 2*chunk]
      2       [2*chunk, 3*chunk]
      ...

  Since we mostly send/recv in bytes, the current internal limit
  for MPI counts (INT_MAX) can be hit rather quickly.

  The chunking limit should thus also be INT_MAX, but since it is
  rather tedious to specify such large numbers, can instead use

      maxCommsSize = -1

  to specify (INT_MAX-1) as the limit.
  The default value of maxCommsSize = 0 (ie, no chunking).

Note
~~~~
  In previous versions, the number of chunks was determined by the
  sender sizes. This required an additional MPI_Allreduce to establish
  an overall consistent number of chunks to walk. This additional
  overhead each time meant that maxCommsSize was rarely actually
  enabled.

  We can, however, instead rely on the send/recv buffers having been
  consistently sized and simply walk through the local send/recvs until
  no further chunks need to be exchanged. As an additional enhancement,
  the message tags are connected to chunking iteration, which allows
  the setup of all send/recvs without an intermediate Allwait.

ENH: extend UPstream::probeMessage to use int64 instead of int for sizes
2024-05-07 15:33:02 +02:00
e15d696a24 STYLE: use Perr instead of Pout for UPstream::debug and warnComm
- avoids polluting standard output for utilities such as
  foamDictionary etc
2024-05-07 14:45:10 +02:00
dbfd1f90b1 ENH: add single-time handling to timeSelector
- the timeSelector is often used to select single or multiple times
  (eg, for post-processing). However, there are a few applications
  where only a *single* time should be selected and set.

  These are now covered by this type of use:

      timeSelector::addOptions_singleTime();  // Single-time options
      ...
      // Allow override of time from specified time options, or no-op
      timeSelector::setTimeIfPresent(runTime, args);

   In some cases, if can be desirable to force starting from the
   initial Time=0 when no time options have been specified:

      // Set time from specified time options, or force start from Time=0
      timeSelector::setTimeIfPresent(runTime, args, true);

   These changes make a number of includes redundant:

     * addTimeOptions.H
     * checkConstantOption.H
     * checkTimeOption.H
     * checkTimeOptions.H
     * checkTimeOptionsNoConstant.H

ENH: add time handling to setFields, setAlphaField (#3143)

    Co-authored-by: Johan Roenby <>

STYLE: replace instant("constant") with instant(0, "constant")

- avoids relying on atof parse behaviour returning zero
2024-05-06 22:22:42 +02:00
883196981d ENH: add offset support to stringOps::split functions
- for example,

     string buffer = ...;
     SubStrings<string> split;
     {
         auto colon = buffer.find(':');

         if (colon != std::string::npos)
         {
             split = stringOps::splitSpace(buffer, colon+1);
         }
     }

    Not really possible with a substr() since that would create a new
    temporary which then disappears.  Similarly awkward to split and
    then scan for the ':' to decide how many to discard.

ENH: add pop_front() and pop_back() methods to SubStrings

- the content is trivial enough (a pair of iterators) and the total
  number of elements is usually reasonable short so that removal of
  elements is inexpensive

  For example,

     string buffer = ...;
     auto split = stringOps::splitSpace(buffer);

     if (!split.empty() && split[0].str() == "face")
     {
         split.pop_front();
     }
2024-05-02 17:53:53 +02:00
3fed41547f COMP: remove template-id for constructor/destructor
- not allowed in C++20

COMP: avoid hidden overloaded-virtual (edgeMesh, surfMesh)
2024-05-02 16:47:46 +02:00
e22edc5dee STYLE: limitTemperature: consolidate standard output stream 2024-05-02 14:17:48 +01:00
0ef7589979 BUG: sampledMeshSurface sampling on "empty" patch fails
- requires a field size check when copying into the flat boundary
2024-05-02 10:24:28 +02:00
7dc9ccdcaa Merge branch 'update-Pstream-message-count' into 'develop'
Use MPI Get_elements_x() for message sizes

See merge request Development/openfoam!681
2024-04-29 10:25:30 +00:00
b2bbc15463 ENH: use MPI Get_elements_x() for message sizes (#3152)
- ensures more accurate values for message sizes than using
  MPI Get_count(), which trucates at INT_MAX

- add more/better error messages when trying to receive messages
  that exceed INT_MAX or the char buffer lengths
2024-04-29 10:22:24 +02:00
7b38b148fa STYLE: use PstreamBuffers default construct
- PstreamBuffers are nonBlocking by default, so no need to re-specify
2024-04-29 10:21:25 +02:00
7f355ba343 STYLE: communication name "buffered" instead of "blocking"
- "buffered" corresponds to MPI_Bsend (buffered send),
  whereas the old name "blocking" is misleading since the
  regular MPI_Send also blocks until completion
  (ie, buffer can be reused).

ENH: IPstream::read() returns std::streamsize instead of label (#3152)

- previously returned a 'label' but std::streamsize is consistent with
  the input parameter and will help with later adjustments.

- use <label> instead of <int> for internal accounting of the message
  size, for consistency with the underyling List<char> buffers used.

- improve handling for corner case of IPstream receive with
  non-blocking, although this combination is not used anywhere
2024-04-29 10:19:40 +02:00
e1d45ec26e ENH: snappyHexMesh: more parallel consistency. See #2331 2024-04-25 15:52:41 +01:00
690d02f9e8 ENH: snappyHexMesh: more parallel consistency. See #2331 2024-04-24 17:10:27 +01:00
31b74cd627 Merge branch 'update-fvsPatchFields-mappers' into 'develop'
Fix fvsPatchFields reading/writing the "value" entry

See merge request Development/openfoam!679
2024-04-24 12:35:11 +00:00
f04ccef588 ENH: improve code consistency for {cell,face,point}Mapper (#3147)
- robuster and more reliable determination of inserted objects
  (previous code could produce false positives).

  Now also determine the number of inserted objects within the
  constructor (instead of simply storing a bool). This allows reuse
  in the address calculations to reduce overheads there.

BUG: dodgy short-circuit logic for insertedObjectLabels()

- as a quick short-circuit it previously created as demand-driven
  pointer with a zero elements. However, this meant that if this code
  was called first (before any other addressing), subsequent calls to
  the addressing would fail.

BUG: bad logic and lookup for faAreaMapper (#3147)

- was using labelHashSet but returning a bool and set using the
  addressing using the unfiltered objects!
  This is a latent bug since interpolated/inserted faces not
  currently supported anyhow.

ENH: use std::unique_ptr for demand-driven data
2024-04-24 14:03:11 +02:00
8a8b5db977 BUG: fvsPatchFields reading/writing the "value" entry (fixes #3144)
- manual revert for 44d0fbd594.

  Unless required for post-processing the "value" entry should not
  written if it is not mandatory for reading.

  This is especially crucial with an 'empty' patch field where the
  field (size 0) has a different size from the patch.

- the changes made align fvsPatchField behaviour with fvPatchField
2024-04-24 14:03:02 +02:00
5fb1181bb2 SUBMODULE: update avalanche tutorials (for new finite-area locations) 2024-04-23 16:57:17 +02:00
411ac5fcfa ENH: adjust return type for token compound factory method
- return autoPtr<token::compound> instead of the derived type,
  otherwise cannot easily construct a token from it

ENH: additional typed version of refCompoundToken()

- symmetric with typed version of transferCompoundToken()
  and isCompound()

- add ITstream::findCompound<Type>() method.
  Useful for searching within token streams
2024-04-23 16:51:38 +02:00
880215e8e6 STYLE: use intermediate variable in openFoamTableReader 2024-04-23 12:16:52 +02:00
3874c1312e Merge branch 'update-argList-mpi-startup' into 'develop'
reduce communication argList at startup

See merge request Development/openfoam!678
2024-04-23 09:20:19 +00:00
09377471a3 ENH: stricter handling when freeing communicator components
- previously automatically skipped the first communicator (which was
  assumed to be MPI_COMM_WORLD), but now simply rely on the
  internal pendingMPIFree_ to track which communicators have actually
  been allocated.
2024-04-23 10:58:41 +02:00
2889dc7248 ENH: add wrapped accessor for MPI_Comm
- UPstream::Communicator is similar to UPstream::Request to
  wrap/unwrap MPI_Comm. Provides a 'lookup' method to transcribe
  the internal OpenFOAM communicator tracking to the opaque wrapped
  version.

- provide an 'openfoam_mpi.H' interfacing file, which includes
  the <mpi.h> as well as casting routines.

  Example (caution: ugly!)

     MPI_Comm myComm =
         PstreamUtils::Cast::to_mpi
         (
             UPstream::Communicator::lookup(UPstream::worldComm)
         );
2024-04-23 10:58:38 +02:00
d75c60d8ae ENH: reduce communication argList at startup (#3142)
- replace point-to-point transmission of the argList args/options with
  a broadcast. This is sufficient for most cases (without distributed
  roots).

  For "normal" cases (non-distributed roots) this will replace the
  nProcs-1 messages with a single broadcast.

- for cases with distributed roots, distinguish between a single,
  identical root and different roots.  An identical root can also be
  subsequently handled with a broadcast. Different roots will still
  require individual point-to-point communication.

  For cases with distributed roots, it will add the overhead of an
  additional broadcast.
2024-04-23 10:55:44 +02:00
582b613d5f ENH: add send/recv static methods for broadcast streams
- adds consistency with regular point-to-point parallel streams.

ENH: add ITstream::tokens() methods

- useful, for example, to disambiguate constructing tokenList from
  a ITstream.

  ITstream& is = otherDict.lookup("original");

  tokenList deepCopy(is);  // Error: from Istream or tokenList??
  tokenList deepCopy(is.tokens());  // OK: from tokenList
2024-04-22 11:46:27 +02:00
6cce1cdc8b STYLE: add push_back() method to dlLibraryTable, cellTable, boundaryRegion
- same as append() did, but with more consistent names

STYLE: replace special purpose append() with container method

STYLE: update code style
2024-04-22 11:46:24 +02:00
b6203a7de5 BUG: overlapping zones: incorrect sizing 2024-04-19 20:19:45 +01:00
701c916764 Merge branch 'update-finiteArea' into 'develop'
update to internal accounting for finite-area

See merge request Development/openfoam!675
2024-04-19 15:52:41 +00:00
d1c4a225a2 CONFIG: increment API level to 2402 (finite-area API changes) 2024-04-19 17:20:09 +02:00
4cfa2ea304 TUT: update for new finite-area location (with foamUpgradeFiniteArea) 2024-04-19 17:20:09 +02:00
b5435cc83e ENH: separate registry and revised file locations for finite-area
- The internal storage location of finite-area changes from being
  piggybacked on the polyMesh registry to a having its own dedicated
  registry:

  * allows a clearer separation of field types without name clashes.
  * prerequisite for supporting multiple finite-area regions (future)

Old Locations:
```
   0/Us
   constant/faMesh
   system/faMeshDefinition
   system/faSchemes
   system/faSolution
```

New Locations:
```
   0/finite-area/Us
   constant/finite-area/faMesh
   system/finite-area/faMeshDefinition  (or system/faMeshDefinition)
   system/finite-area/faSchemes
   system/finite-area/faSolution
```

NOTES:
    The new locations represent a hard change (breaking change) that
    is normally to be avoided, but seamless compatibility handling
    within the code was found to be unworkable.

    The `foamUpgradeFiniteArea` script provides assistance with migration.

    As a convenience, the system/faMeshDefinition location continues
    to be supported (may be deprecated in the future).
2024-04-19 17:20:09 +02:00
1d5b95b5fe BUG: redistributePar: Distributing refinement data. Fixes #3137.
- was using blocking (=buffered) comms
- was running out of MPI_COMM_SIZE buffer space
- now using PstreamBuffers to have non-blocing comms
2024-04-18 11:52:34 +01:00
31aadc5c4d ENH: prefer objectRegistry sorted to lookupClass
- lower memory overhead, consistent access pattern
2024-04-16 10:18:08 +02:00
a803516b16 ENH: use typedef for MeshObject within derived classes
- use an internal 'typedef MeshObject<...> MeshObject_type' within
  derived classes. Reduces clutter and eases any updates.
2024-04-16 10:18:08 +02:00
1b212789e5 ENH: add MeshObject Release() static method
- Delete() will perform a 'checkOut()' which does the following:
  * remove the object from the registry
  * delete the pointer (if owned by the registry)

- Release() does the following:
  * transfer ownership of the pointer (if owned by the registry)

- Store() does the following:
  * transfer ownership of the pointer to the registry

ENH: use UPtrList of sorted objects for MeshObject updates

- few allocations and lower overhead than using a HashTable,
  ensures the same walk order over the objects (in parallel)

STYLE: adjust meshObject debug statements
2024-04-16 10:18:08 +02:00