Commit Graph

321 Commits

Author SHA1 Message Date
a753f0ac0b STYLE: alignment and capitalization of website address 2019-11-01 19:28:57 +01:00
da33222970 ENH: add flexible command options for setting Debug and Info switches #1467
For example,

   $ someSolver -info-switch writeOptionalEntries

- note that values changed via the command-line are changed after the
  etc/controlDict entries, but *before* any case-local
  system/controlDict entries.

  However, in many testing cases the command-line options eliminate
  the need for such local file modifications.

ENH: cleanup handling of local debug switches in Time

- add as methods directly on simpleObjectRegistry to avoid code
  duplication

STYLE: adjust internal naming of ITstream parameters
2019-10-25 15:03:11 +02:00
518fb0858d CONFIG: support -prefix for openfoam wrapper 2019-10-01 13:42:58 +02:00
fb0057ea72 STYLE: accept lowercase -sp/-dp/-spdp for foamConfigurePaths 2019-09-25 18:20:32 +02:00
043d55e382 ENH: add wrapper for starting OpenFOAM as an interactive bash session
- call also be used non-interactively for simple 'one-shot' use of
  OpenFOAM utilities or solvers

STYLE: use dash instead of brackets for '- see www.OpenFOAM.com'

- less cluttered in combination with API information
2019-09-25 17:36:10 +02:00
c072000dca ENH: add edit for ADIOS2 settings in foamConfigurePaths
CONFIG: remove adios1 config files
2019-08-16 09:17:18 +02:00
b0eb74c142 SUBMODULE: added adios submodule (ADIOS2) and control files 2019-08-07 16:50:47 +02:00
1ffda6facb STYLE: set owner as root/root for manifest.txt in tarfile (for consistency) 2019-07-12 14:19:23 +02:00
b7d3607716 STYLE: remove uncompressed tar file after -tgz output 2019-07-10 20:34:40 +02:00
f7a707e00e STYLE: allow '=' option separators in some bin/tools scripts 2019-06-26 11:27:53 +02:00
ff81ec8cf3 CONFIG: add -no-patch option for foamPackRelease
- if desired to create a tar-file without a _patch value in its name.
2019-06-26 00:57:49 +02:00
3a65840993 CONFIG: set umask 0022 when packing tar files for release 2019-06-25 17:24:39 +02:00
47f375887e CONFIG: adjust bin/tools/foamConfigurePaths
- add a '-SPDP' option

- remove the '-archOption' for forcing a '-m32' build on 64-bit
  architecture, which is now considered too obscure.
  Must edit files manually if this option is really required.
2019-06-25 07:48:33 +02:00
ecc1fb5efb CONTRIB: New adjoint optimisation and tools
A set of libraries and executables creating a workflow for performing
gradient-based optimisation loops. The main executable (adjointOptimisationFoam)
solves the flow (primal) equations, followed by the adjoint equations and,
eventually, the computation of sensitivity derivatives.

Current functionality supports the solution of the adjoint equations for
incompressible turbulent flows, including the adjoint to the Spalart-Allmaras
turbulence model and the adjoint to the nutUSpaldingWallFunction, [1], [2].

Sensitivity derivatives are computed with respect to the normal displacement of
boundary wall nodes/faces (the so-called sensitivity maps) following the
Enhanced Surface Integrals (E-SI) formulation, [3].

The software was developed by PCOpt/NTUA and FOSS GP, with contributions from

Dr. Evangelos Papoutsis-Kiachagias,
Konstantinos Gkaragounis,
Professor Kyriakos Giannakoglou,
Andy Heather

and contributions in earlier version from

Dr. Ioannis Kavvadias,
Dr. Alexandros Zymaris,
Dr. Dimitrios Papadimitriou

[1] A.S. Zymaris, D.I. Papadimitriou, K.C. Giannakoglou, and C. Othmer.
Continuous adjoint approach to the Spalart-Allmaras turbulence model for
incompressible flows. Computers & Fluids, 38(8):1528–1538, 2009.

[2] E.M. Papoutsis-Kiachagias and K.C. Giannakoglou. Continuous adjoint methods
for turbulent flows, applied to shape and topology optimization: Industrial
applications. 23(2):255–299, 2016.

[3] I.S. Kavvadias, E.M. Papoutsis-Kiachagias, and K.C. Giannakoglou. On the
proper treatment of grid sensitivities in continuous adjoint methods for shape
optimization. Journal of Computational Physics, 301:1–18, 2015.

Integration into the official OpenFOAM release by OpenCFD
2019-06-17 12:59:11 +01:00
0628bfb017 CONFIG: remove legacy tools, update foamPackRelease/foamUpdateCaseFileHeader 2019-06-06 16:45:57 +02:00
c320892aa2 COMP: use '-n' instead of '-np' for runParallel (#1238)
- options '-n' and '-np' are synonymous, but some mpiexec versions may
  only recognize '-n' and not '-np'
2019-06-04 17:51:20 +02:00
ca724b2e1a TUT: cleanup postProcessing in planeTransport finiteArea tutorial 2019-06-04 15:11:05 +02:00
52df9a2fee TUT: use mpiexec instead of mpirun for msmpi in RunFunctions (#1238) 2019-06-04 11:22:21 +02:00
f0f4af16d2 Merge remote-tracking branch 'origin/master' into develop 2019-04-08 12:05:24 +02:00
ba26175198 BUG: foamCreateModuleInclude ignores -output option (fixes #1190)
ENH: add -prefs option to pass in a preferences configuration file
2019-02-04 14:48:03 +01:00
63d8e7e576 ENH: make use of FOAM_API for environment as well (issue #1158)
- was WM_PROJECT_API in the environment and FOAM_API in dictionaries.

  Make these both consistently FOAM_API.
  This is a non-breaking change, since the value of WM_PROJECT_API
  (added in 1812) and/or FOAM_API is purely informative.
  For the current correct values, always use

    * foamEtcFile -show-api
    * wmakeBuildInfo -show-api
2019-01-10 12:21:19 +01:00
154029ddd0 BOT: Cleaned up header files 2019-02-06 12:28:23 +00:00
dd23155d81 ENH: foamPackRelease tool for creating tar-files with submodule contents 2019-01-26 16:40:33 +01:00
b0fafd18fe STYLE: reorganize some legacy and less frequently used components
- older emacs tools into legacy
- old process tools

* Less frequently used scripts into bin/tools/

  - findEmptyMake
  - foamAllHC
  - foamUpdateCaseFileHeader

* Infrastructure file (only used by foamNewApp)

  - wmake/wmakeFilesAndOptions -> wmake/scripts/wmakeFilesAndOptions

* Merge wmakeRoot convenience as 'wmake -pwd'
* Remove obsolete wmakePrintBuild (superseded by wmakeBuildInfo)
* Remove unused mergeHistory file
2019-01-26 11:30:50 +01:00
a39ed60625 STYLE: limit foamCreateManpage to documented options
Previously silently accepted '-o' as being equivalent to '-output',
but the former could be misinterpreted meaning an output file (which
it is not) instead of an output directory.
2019-01-26 11:24:52 +01:00
bef508dedc ENH: make use of FOAM_API for environment as well (issue #1158)
- was WM_PROJECT_API in the environment and FOAM_API in dictionaries.

  Make these both consistently FOAM_API.
  This is a non-breaking change, since the value of WM_PROJECT_API
  (added in 1812) and/or FOAM_API is purely informative.
  For the current correct values, always use

    * foamEtcFile -show-api
    * wmakeBuildInfo -show-api
2019-01-10 12:21:19 +01:00
2c70dfc51d ENH: add pdf option to foamCreateManpage 2018-12-21 16:06:19 +01:00
67140f6b07 STYLE: update documentation about central controlDict 2018-12-12 13:38:14 +01:00
a66e9c7468 ENH: adjust completion parser
- restrict to text between "^[Oo]ptions:" and "-help-full" to avoid
  potential issues when more text is introduced in the usage output.
2018-12-12 03:07:14 +01:00
ee5199cc65 STYLE: adjust manpage layouts 2018-12-10 22:40:53 +01:00
38c56c5c6b BUG: command-args overload ignored for etc/config.csh/paraview
- now needs local 'set' instead of 'setenv'

- fixed inconsistency in edit of ParaView_VERSION for csh version
2018-12-10 09:50:46 +01:00
069dd14413 Merge branch 'feature-config' into 'develop'
ENH: update handling of versioning and make control (issue #1010)

See merge request Development/OpenFOAM-plus!222
2018-12-06 08:37:48 +00:00
2469f698e9 CONFIG: update completion_cache (for csh users)
- now consider options '-hostRoots', '-roots' to be advanced options
  that don't need to be in the cache
2018-12-05 08:50:38 +01:00
274bb501bc STYLE: incorrect option name handling for foamCreateModuleInclude
- The usage claimed '-output=', but was using '--output=' for the
  output file.  Rectify to use single dash as documented.
2018-12-04 17:19:25 +01:00
6c68c34e1a ENH: update handling of versioning and make control (issue #1010)
- Use the OPENFOAM define (eg, 1806, 1812), which normally corresponds
  to a major release, to define an API level. This remains consistent
  within a release cycle and means that it is possible to manage
  several sub-versions and continue to have a consistent lookup.

  The current API value is updated automatically during the build
  and cached as meta data for later use, even when the wmake/ directory
  is missing or OpenFOAM has not yet be initialized.

  The version information reported on program start or with -help
  usage adjusted to reflect this. The build tag from git now also
  carries the date as being more meaningful to trace than a hash
  value.

- Update etc/bashrc and etc/cshrc to obtain the project directory
  directly instead of via its prefix directory. The value obtained
  corresponds to an absolute path, from which the prefix directory
  can be obtained.

  The combination of these changes removes the reliance on any
  particular directory naming convention.
  For example,

     With an 1812 version (API level):

     WM_PROJECT_VERSION=myVersion

     installed as /some/path/somewhere/openfoam-mySandbox

  This makes the -prefix, -foamInstall, -projectVersion, -version
  values of foamEtcFiles, and similar entries for foamConfigurePaths
  superfluous.

  WM_PROJECT_INST_DIR is no longer required or used

ENH: improve handling and discovery of ThirdParty

- improve the flexibility and reusability of ThirdParty packs to cover
  various standard use cases:

    1. Unpacking initial release tar files with two parallel directories
       - OpenFOAM-v1812/
       - ThirdParty-v1812/

    2. With an adjusted OpenFOAM directory name, for whatever reason
       - OpenFOAM-v1812-myCustom/
       - openfoam-1812-other-info/

    3. Operating with/without ThirdParty directory

  To handle these use cases, the following discovery is used.

  Note PROJECT = the OpenFOAM directory `$WM_PROJECT_DIR`
       PREFIX = the parent directory
       VERSION = `$WM_PROJECT_VERSION`
       API = `$WM_PROJECT_API`, as per `foamEtcFiles -show-api`

   0. PROJECT/ThirdParty
      - for single-directory installations

   1. PREFIX/ThirdParty-VERSION
      - this corresponds to the traditional approach

   2. PREFIX/ThirdParty-vAPI
      - allows for an updated value of VERSION (eg, v1812-myCustom)
        without requiring a renamed ThirdParty. The API value
        would still be '1812' and the original ThirdParty-v1812/
        would be found.

   3. PREFIX/ThirdParty-API
      - this is the same as the previous example, but using an unadorned
        API value. This also makes sense if the chosen version name also
        uses the unadorned API value in its naming
        (eg, 1812-patch190131, 1812.19W03)

   4. PREFIX/ThirdParty-common
      - permits maximum reuse for various versions, but only for
        experienced user who are aware of potential version
        incompatibilities

   Directory existence is checked as is the presence of an Allwmake file
   or a platforms/ directory. This reduces the potential of false positive
   matches and limits the selection to directories that are either
   with sources (has the Allwmake file), or pre-compiled binaries (has
   the platforms/ directory).

   If none of the explored directories are found to be suitable,
   it reverts to using a PROJECT/ThirdParty dummy location since
   this is within the project source tree and can be trusted to
   have no negative side-effects.

ENH: add csh support to foamConfigurePaths

- this removes the previously experienced inconsistence in config file
  contents.

REMOVED: foamExec

- was previously used when switching versions and before the
  bashrc/cshrc discovery logic was added. It is now obsolete.
2018-12-02 18:25:57 +01:00
c5beee63f3 ENH: add isTrue function to RunFunctions
- check if the first argument corresponds to an OpenFOAM value for
  'true' (as per Switch).
  True == 't', 'y', 'true', 'yes', 'on'. Everything else is not true.

- when the first argument is '-dict', it initializes the value
  with a query via foamDictionary.
  Eg,
       isTrue -dict mydict -entry parallel

   ==> value=$(foamDictionary mydict -entry parallel -value)
       isTrue $value

   a missing entry is silently treated as false.

ENH: add getNumberOfPatchFaces function in RunFunctions

- simple extraction of nFaces from boundary file for given patch/region
2018-11-30 19:29:49 +01:00
9e094f1f07 ENH: relocate WM_PROJECT_SITE default (issue #1050)
- was PREFIX/site, now PROJECT/site

  This avoids several issues when installing OpenFOAM in clusters
  without an intermediate OpenFOAM-specific installation prefix.

  The 'site' directory may have a reserved meaning in these situations
  and it is undesirable to 'leak' upwards into the parent directory to
  look for configuration files.

  Placing the default within the project directory avoids this.
  Alternative locations can be given via the WM_PROJECT_SITE variable.
2018-11-29 18:04:44 +01:00
b105f926b1 ENH: improvements to foamConfigurePaths tool (#1010)
- provide edit for adjusting the ThirdParty and fallback site variables.
  This is useful when packaging into a single directory, and possibly
  without any ThirdParty dependencies.

- support '-prefix' (similar to auotconfig) as an alternative to
  '-foamInstall'. Use this prefix to set the prefix directly.
  Bypasses and disables the bash sourcing magic.
2018-11-23 15:30:29 +01:00
8f4067015d STYLE: remove shebang from LogFunctions
- file is to be sourced, non-executable.

- remove stray .keep file from tutorial case
2018-11-22 17:31:34 +01:00
5187aa13aa ENH: improve output formatting for usage information
- generalize output text wrapping, use for usage notes

- add -help-man option for generating manpage content for any OpenFOAM
  application or solver.

  bin/tools/foamCreateManpage as helper
2018-11-21 19:55:28 +01:00
50ccb197dc BUG: fix bad environment parsing in foamCreateModuleInclude
- The changes in foamCleanPath introduced for issues (#1007, #1008)
  include quoted output of the cleaned environment variable.
  When used in foamCreateModuleInclude, the quotes make their way
  into the final environment. Avoid this by using the -sh-env
  eval format instead.

- add environment extraction of MANPATH changes
2018-11-21 11:02:58 +01:00
31c21031ea ENH: reduce intermediate text with generating completion options
- more filtering in the sed stage to remove non-essential text.
  Terminate parsing on first appearance of -help-full option.
2018-11-21 10:51:57 +01:00
698bf3f61d STYLE: usage order in foamConfigurePaths 2018-11-19 15:38:14 +01:00
5029d29ff6 ENH: support -gcc option for foamConfigurePaths
- simplifies things for legacyCompile
2018-11-15 13:55:21 +01:00
19d600472a ENH: auto-detect git in tutorials Alltest 2018-10-12 23:29:16 +02:00
e0f83938ee ENH: ignore -noFunctionObjects option when disabled
- With argList::noFunctionObjects() we use the logic added in
  4b93333292 (issue #352)

  By removing the '-noFunctionObjects' option, we automatically
  suppress the creation of function-objects via Time (with argList
  as a parameter).
  There is generally no need in these cases for an additional

      runTime.functionObjects().off()  statement

  Use the argList::noFunctionObjects() for more direct configuration
  and reduce unnecessary clutter in the -help information.

  In previous versions, the -noFunctionObjects would have been redundant
  anyhow, so we can also just ignore it now instead.
2018-08-08 09:44:28 +02:00
cf7bd82c25 STYLE: fix tools/lib-dir -help output 2018-08-07 11:19:10 +02:00
59b4a77d23 TUT: RunFunctions - added protection for user shell customisations 2018-06-26 11:51:02 +01:00
831a47b81e CONFIG: eliminate most occurances of outdated FOAM_INST_DIR (issue #444)
- since 1612, FOAM_INST_DIR and foamInstDir longer have any
  special meanings when sourcing the bashrc or cshrc files.
  Thus no need for special treatment in any of the dispatch wrappers.

  Retained FOAM_INST_DIR as (unexported) variable in etc/bashrc,
  just in case people are using patched versions of etc/bashrc
  as part of their installation.

ENH: relax prefix restrictions on foamCreateVideo (issue #904)

- shift the implicit '.' to be part of the default prefix. This allows
  things like "-image myimages_00" to work as might be expected.
2018-06-25 09:56:34 +02:00
b68fe2c76d BUG: cleanCase deletes blockMeshDict (fixes #900)
- Don't remove the constant/polyMesh directory if it contains a
  blockMeshDict or blockMeshDict.m4 file. Offer a reminder that
  system/ is the normal place for it.
2018-06-22 14:50:25 +02:00