Commit Graph

299 Commits

Author SHA1 Message Date
0352a224b7 COMP: access transformedElements by reference, not copy
- better code style and seems to avoid triggering a gcc warning about
  possibly uninitialized values

COMP: JSONformatter writeEntry missing a return value

STYLE: accept 'json' for checkMesh write format

- consistent with caseInfo functionObject
2023-12-15 16:17:15 +01:00
d77db0edb9 ENH: Added new JSONformatter to write Ostream content in JSON format
New Ostream wrapper that writes entries as JSON objects/convert OpenFOAM
dictionaries to JSON dictionaries, e.g.

    dictionary dict ...

    // Create file for writing
    OFstream os("myData.json");

    // Wrap Ostream
    JSONformatter json(os);

    // Write dictionary as JSON
    json.writeDict(dict);
2023-12-01 11:54:35 +00:00
6adac8e0ab ENH: update Nastran surface reader to handle new ANSA conventions (#3009) 2023-11-15 11:11:34 +01:00
546b204793 COMP: split endian.H into foamEndianFwd.H and foamEndian.H
- usually only need big/little defines (which are now in the Fwd)
  and rarely need byte-swapping.

  Provide endian.H compatibility include, but foamEndianFwd.H or
  foamEndian.H to avoid potential name clashes.
2023-11-07 10:33:47 +01:00
d9f0587416 ENH: promote ListOps::identity to Foam::identity
- becoming more frequently used and there is no ambiguity in calling
  parameters either - identity(label) vs identity(labelUList&).

  Provide both int32 and int64 versions.
2023-10-26 11:24:57 +02:00
ba2e774aac ENH: increase precision for ensight field cache (#2999)
- attempt to minimize rounding in the cached time values
  since these are also used to re-populate the case files

STYLE: remove ancient handling of "meshes" entry

- was superseded by "geometry" entry in OpenFOAM-1912 and later.
  Now remove the transitional shim, which was in place for
  restart migration from 1906.
2023-10-19 10:28:09 +00:00
dafae668d1 ENH: support user specification of ensight time format/precision (#2999)
- new format option keywords: timeFormat, timePrecision

CONFIG: default ensight output is now consistently BINARY

- this removes some uncertainty with the ensightWrite functionObject
  which was previously dependent on the simulation writeFormat
  and makes its behaviour consistent with foamToEnsight

  Note: binary Ensight output is consistent with the
  defaults for VTP output (inline binary)

ENH: minor adjustment of ensight writing methods
2023-10-19 10:28:09 +00:00
c65fac192e REGRESSION: incorrect fill range for ensight writeString
- introduced by b76595df42, only affects recent develop
2023-10-13 14:42:37 +02:00
b76595df42 ENH: improve stream output of std::string etc.
- change write(const string&) to write(const std::string&).
  This allows output of std::string without an intermediate copy.

- additional writeQuoted method to handle range of char data:

     writeQuoted(const char* str, std::streamsize len, bool)

  This helps with supporting string_view and span<char>

- add operator<< for stdFoam::span<char> and std::string_view (c++17)

- avoid duplicate code in OBJstream

STYLE: add override keyword for IO stream methods
2023-10-11 18:11:37 +00:00
459aaad0f9 ENH: improve robustness of raw reading, file size checks
- use ignore instead of seekg/tellg to swallow input (robuster)

- check for bad gcount() values

- wrap Foam::fileSize() compressed/uncompressed handling into IFstream.

- improve handling of compressed files in masterUncollatedFileOperation.
  Previously read into a string via stream iterators.
  Now read chunk-wise into a List of char for fewer reallocations.
2023-09-01 14:44:49 +00:00
a341d09afc ENH: update and enhancement of memory-streams
- soft renames (ie, old names still available via typedefs) for more
  reasonable names and more coverage with std stream variants.

  The old names could be a bit cryptic.
  For example, uiliststream (== an unallocated/external list storage),
  which is written as std::ispanstream for C++23.

  Could similarly argue that IListStream is better named as
  ICharStream, since it is an input stream of characters and the
  internal storage mechanism (List or something else) is mostly
  irrelevant.

  Extending the coverage to include all std stream variants, and
  simply rewrap them for OpenFOAM IOstream types. This simplifies the
  inheritance patterns and allows reuse of icharstream/ocharstream as
  a drop-in replace for istringstream/ostringstream in other wrappers.

  Classes:
    * icharstream / ICharStream   [old: none / IListStream]
    * ocharstream / OCharStream   [old: none / OListStream]
    * ispanstream / ISpanStream   [old: uiliststream / UIListStream]
    * ospanstream / OSpanStream   [old: none / UOListStream]

  Possible new uses : read file contents into a buffer, broadcast
  buffer contents to other ranks and then transfer into an icharstream
  to be read from. This avoid the multiple intermediate copies that
  would be associated when using an istringstream.

- Use size doubling instead of block-wise incremental for ocharstream
  (OCharStream). This corresponds to the sizing behaviour as per
  std::stringstream (according to gcc-11 includes)

STYLE: drop Foam_IOstream_extras constructors for memory streams

- transitional/legacy constructors but not used in any code
2023-09-01 14:44:49 +00:00
0e11f47f74 STYLE: prefer emplace_back() to append() + last() 2023-08-29 11:24:16 +02:00
db16d80840 ENH: use objectRegistry/IOobjectList sorted instead of lookupClass
- in most cases a parallel-consistent order is required.
  Even when the order is not important, it will generally require
  fewer allocations to create a UPtrList of entries instead of a
  HashTable or even a wordList.
2023-07-31 20:11:32 +02:00
779c3fe11e STYLE: use 'is_sorted()' instead of 'sorted()' for readers, Pair, ...
- avoids naming ambiguity between querying sorted state vs returning a
  sorted list (for example)

ENH: add 'good()' method to a few more classes
2023-07-19 14:10:31 +02:00
83b1ebee6f COMP: replace sprintf with snprintf (MacOS), add note about vfork 2023-06-14 13:55:38 +02:00
87cb811db2 COMP: fix library linkage (#2784), silence some unused variable warnings 2023-05-19 00:46:52 +02:00
a5d9ad3a5c STYLE: use noexcept creation of InfoProxy and dereference as '*iproxy'
- this removes the 'magic' use of the exposed t_ member in favour
  of a generic dereference
2023-05-18 18:23:46 +02:00
d5c0852de1 ENH: improve diagnostic fields for checkFaMesh -write-vtk
ENH: support VTK output of procIDs for point data for some writers

TUT: areaWrite for drippingChair
2023-03-02 20:50:52 +01:00
e623e6a865 STYLE: favour include word.H instead of string.H
- in many places the string.H include is redundant anyhow.
  May wish to change to foamString.H (or equiv) in the future
2023-02-27 15:41:25 +01:00
d597b3f959 STYLE: check iterator validity with good() instead of found()
- aligns better with other container checks
2023-02-10 17:12:48 +01:00
eb8b51b475 ENH: use back(), pop_back() instead remove()
- adjust looping to resemble LIFO pattern

STYLE: adjust some string includes
2023-01-27 09:50:46 +01:00
8afd6ff729 ENH: support format readOptions for surfaceReader types (#2609)
- similar to surface writing formats, also support optional
  dictionary of reading options. The main beneficiary of this is the
  ensight surface reader:

  readOptions
  {
      ensight
      {
          masterOnly true;
      }
  }

  This will restrict reading to the master rank. Surfaces and values
  read will be broadcast to the other ranks, with the intention of
  reducing load on the filesystem.

ENH: add writing of Dimensioned fields for areaWrite functionObject

- can be useful for examining finite-area source terms
2022-12-09 10:59:36 +01:00
3151dacccc ENH: include <algorithm> in stdFoam.H
- was already included in many places (via UList.C templates), but now
  formalise by placing in stdFoam.H
2022-12-01 15:52:48 +00:00
27c2cdc040 ENH: vector mag(), magSqr() methods - complementary to dist(), distSqr()
ENH: use direct access to pointHit as point(), use dist(), distSqr()

- if the pointHit has already been checked for hit(), can/should
  simply use point() noexcept access subsequently to avoid redundant
  checks. Using vector distSqr() methods provides a minor optimization
  (no itermediate temporary), but can also make for clearer code.

ENH: copy construct pointIndexHit with different index

- symmetric with constructing from a pointHit with an index

STYLE: prefer pointHit point() instead of rawPoint()
2022-11-24 12:21:01 +00:00
9114e01de9 STYLE: align faceZone handling (functionObjects, sampling)
- pattern as per surfaceFieldValue::setFaceZoneFaces()

  1. define faceId, facePatchId assuming an internal face
  2. if actually a boundary face:
     - get facePatchId
     - ignore if emptyPolyPatch or coupledPolyPatch (neighbour side)
     - get patch relative faceId

  This currently seems to be the least amount of code clutter.

ENH: recover some memory my shrinking lists in fluxSummary

BUG: potentially trailing rubbish in the heatExchangerModel lists

- the final resize to length actually used was missing.
  Does not affect any released versions
2022-11-22 13:14:53 +01:00
1dafe5d393 ENH: use full scratch buffer capacity for ensight output
- improves overall buffering ability across parts
2022-11-17 14:03:25 +01:00
0fabbcb404 ENH: direct ensight output of float/double
- since ensight format is always float and also always written
  component-wise, perform the double -> float narrowing when
  extracting the components.  This reduces the amount of data
  transferred between processors.

ENH: avoid vtk/ensight parallel communication of empty messages

- since ensight writes by element type (eg, tet, hex, polyhedral) the
  individual written field sections will tend to be relatively sparse.
  Skip zero-size messages, which should help reduce some of the
  synchronization bottlenecks.

ENH: use 'data chunking' when writing ensight files in parallel

- since ensight fields are written on a per-element basis, the
  corresponding segment can become rather sparsely distributed. With
  'data chunking', we attempt to get as many send/recv messages in
  before flushing the buffer for writing. This should make the
  sequential send/recv less affected by the IO time.

ENH: allow use of an external buffer when writing ensight components

STYLE: remove last vestiges of autoPtr<ensightFile> for output routines
2022-11-15 17:26:09 +01:00
5338e56c73 ENH: add support for OFstream atomic file creation (#2631)
- with ATOMIC, an intermediary file is created - eg, (fileAbc~tmp~)
  where all of the output is written to. When the stream goes out of
  scope, this intermediary file is moved/renamed to the actually
  output name - eg, (fileAbc~tmp~) -> (fileAbc).

  This adds some safety if the simulation crashes while writing the
  file, since it will the partial (corrupt) file will be left
  behind as (fileAbc~tmp~) and not as (fileAbc), which means it will
  will be treated as a backup file and not loaded again on restart.

ENH: provided enumeration for APPEND/NON_APPEND

- clearer than using bool (with comments).
  Since append mode is primarily only used by masterOFstream etc
  this change is unlikely to affect user coding.

ENH: use file atomic for ensight file creation

- avoids corrupt (truncated) files being referenced by the ensight
  case file if the simulation crashes while writing the ensight file.
2022-11-15 14:10:01 +01:00
25e874a4f0 ENH: provide MPI native minOp, maxOp reduce multiple values
- consistent with sumOp

ENH: globalIndex with gatherNonLocal tag, and use leading dispatch tags

- useful for gather/write where the master data can be written
 separately.  Leading vs trailing dispatch tags for more similarity to
 other C++ conventions.
2022-11-15 14:00:18 +01:00
473e14418a ENH: more consistent use of broadcast, combineReduce etc.
- broadcast           : (replaces scatter)
  - combineReduce       == combineGather + broadcast
  - listCombineReduce   == listCombineGather + broadcast
  - mapCombineReduce    == mapCombineGather + broadcast
  - allGatherList       == gatherList + scatterList

  Before settling on a more consistent naming convention,
  some intermediate namings were used in OpenFOAM-v2206:

    - combineReduce       (2206: combineAllGather)
    - listCombineReduce   (2206: listCombineAllGather)
    - mapCombineReduce    (2206: mapCombineAllGather)
2022-11-08 16:48:08 +00:00
278378031e ENH: add syncState() method to serial streams (#2623)
- in places where direct reading from the std::stream is used,
  this method can be used to ensure that the OpenFOAM Sstream state
  is properly updated from the std::stream.

ENH: restrict stream renaming to ISstream

- non-const access was previously declared at the top-level (IOstream)
  but that not only added in potentially odd setting of the static
  fileName, but also meant that the OFstream name() could potentially
  be altered after opening a file and thus be inconsistent with the
  underlying file that had been opened.

  Now restrict name modification to ISstream (and ITstream
  counterpart). Does not affect any existing valid code.

STYLE: non-default OFstream destructor (for future file staging)
2022-10-31 09:34:37 +01:00
779a2ca084 ENH: adjust fileName methods for similarity to std::filesystem::path
- stem(), replace_name(), replace_ext(), remove_ext() etc

- string::contains() method - similar to C++23 method

  Eg,
      if (keyword.contains('/')) ...
  vs
      if (keyword.find('/') != std::string::npos) ...
2022-10-11 17:58:22 +02:00
623c0624fb ENH: simplify stream construction
- with IOstreamOption there are no cases where we need to construct
  top-level streams (eg, IFstream, OFstream) with additional information
  about the internal IOstream 'version' (eg, version: 2.0).

  Makes it more convenient to open files with a specified
  format/compression combination - no clutter of specifying the
  version
2022-10-04 15:51:26 +02:00
159a7a5a38 ENH: simplify parallel/serial checks in ensight output
BUG: inadvertant type conversion in ensightFileTemplates::writeLabels
2022-10-04 15:51:26 +02:00
9fa37ba068 ENH: add static centre(), {area,unit}Normal() methods to triangle
- commonly used calculations

ENH: add faPatch::patchRawSlice method

- slices using the nEdges() instead of the virtual size(),
  which provides similar functionality as finite-volume has with
  its distinction between polyPatch vs fvPatch patchSlice

- use patchInternal for obtaining faPatch, fvPatch information
2022-09-26 18:03:23 +02:00
f9b85dbfbb BUG: bad detection of Ensight binary/ascii (fixes #2579)
- related to #2535
2022-09-09 11:55:33 +02:00
b4612b4c04 ENH: cleanup ensight surface reader (#2535)
- some central (core) bits under fileFormats,

- general surface reading relocated from sampling to surfMesh since it
  does not use any sampling-specific components and will permit
  re-use in meshTools (for example)

- remove old mask, subDir methods from ensightFile which were
  previously relocated to ensightCase

- improve handling of 'undef' values when generating and reading,
  respect Ensight component ordering when reading.
2022-07-19 11:17:52 +02:00
c4d18e97a3 ENH: additional methods for OBJstream
- write point fields
- writeLine (takes two points)
- writeFace (takes list of face loop points)
2022-07-19 11:17:51 +02:00
dea31e9b4a ENH: consistent member access for triFace / triangle etc.
- can access the vertices/points as a(), b(), c()
2022-07-19 11:17:51 +02:00
3d892ace29 STYLE: set readOpt(..), writeOpt(..) by parameter, not by assignment
STYLE: qualify format/version/compression with IOstreamOption not IOstream

STYLE: reduce number of lookups when scanning {fa,fv}Solution

STYLE: call IOobject::writeEndDivider as static
2022-07-19 11:17:47 +02:00
1afd27db6c BUG: incorrect ensight filename references (fixes #2532)
- Ensight places restrictions both on variable names and on file
  names. When generating the variable to file name correspondence for
  use in the Ensight case file, previously used the less stringent
  variable name for both sides of the variable table.

  This would lead to situations where the (valid) variable name
  referred to the wrong file name. Now apply the file-name restriction
  consistently when creating the variable table. This is especially
  necessary since the stem of the filename additionally has
  specific characters (eg, ":<>[]") that can be problematic for the
  shell or file-system.

ENH: avoid repeated '_' in qualified ensight names.

- when replacing undesirable characters (eg, ":<>[]") with '_', avoid
  duplicates.

  Eg, "PaSR<psiReactionThermo>:Qdot" becomes
      "PaSR_psiReactionThermo_Qdot" instead of
      "PaSR_psiReactionThermo__Qdot"

ENH: additional ensightCase::padded static method
2022-07-13 19:21:11 +02:00
b4a482751b ENH: simplify tetrahedron and triangle handling
- combine header definitions, more pass-through methods

- face/triFace: support += operator (vertex offset)
2022-07-08 11:13:00 +02:00
b712e7289e ENH: use typed lookup versions instead of xyz::typeName literals 2022-05-17 17:35:51 +02:00
dea2f23afd COMP: combine uindirectPrimitivePatch.H into indirectPrimitivePatch.H
- similarly combine typedef headers for primitiveFacePatch,
  foamVtkUIndPatchWriter, foamVtkUIndPatchGeoFieldsWriter etc
  (reduce file clutter)
2022-05-10 10:47:01 +02:00
bf0b3d8872 ENH: relocate sortedOrder from ListOps.H to List.H
- commonly used, only depends on routines defined in UList
  (don't need the rest of ListOps for it).

ENH: implement boolList::operator() const

- allows use as a predicate functor, as per bitSet and labelHashSet

GIT: combine SubList, UList into List directory (intertwined concepts)

STYLE: default initialize DynamicList instead of with size 0
2022-05-09 14:52:47 +02:00
46a1e7e21e GIT: missed change (rebase) to ensight manifold cell handling (#2396) 2022-03-13 22:53:33 +01:00
6e509c10fc ENH: handle manifold cells in VTK, Ensight output (#2396)
- also disables PointData if manifold cells are detected.
  This is a partial workaround for volPointInterpolation problems
  with handling manifold cells.
2022-03-12 21:16:30 +01:00
2d7f2c26be ENH: MeshObject for handling manifold mesh connectivity (#2396) 2022-03-12 21:16:30 +01:00
c4d4becbac ENH: -exclude-fields, -no-fields options for foamToEnsight, foamToVTK
- additional verbosity option for conversions

- ignore old `-finite-area` option and always convert available
  finiteArea mesh/fields unless `-no-finite-area` is specified (#2374)

ENH: simplify point offset handling for ensight output

- extend writing to include compact face/cell lists
2022-03-12 21:16:30 +01:00
62fc3bbc33 STYLE: broadcast instead of combineScatter/listCombineScatter/mapCombineScatter
- these are the same thing now and 'broadcast' expresses the intention
  more directly/consistently
2022-03-12 21:16:30 +01:00