Commit Graph

528 Commits

Author SHA1 Message Date
c9a9309b8c ENH: simplify construction of zero-sized Clouds
- use Foam::zero as a dispatch tag

FIX: return moleculeCloud::constProps() List by reference not copy

STYLE: range-for when iterating cloud parcels

STYLE: more consistent typedefs / declarations for Clouds
2023-12-15 16:17:15 +01:00
d086cc5a0e COMP: stricter handling of openmp vs no-openmp
- give precedence to ~openmp (-no-openmp) over +openmp (-openmp)
  in the general rules and in the Makefile. This makes it robuster
  when specifying +openmp in general, but ~openmp for specific build
  components.

- disable openmp for OSspecific and Pstream components.
  Neither should contain any openmp code anyhow.

  Additionally, since OSspecific is generally built as a static
  object, it can become problematic (eg, with AMD ROCm) if the
  compiler generates information that openmp is required but then uses
  static linkage.
2023-12-11 15:56:00 +01:00
13352861c8 ENH: improve consistency in handling of global IOobjects (#3045)
- replace typeGlobal() global function with is_globalIOobject
  traits for more consistent and easier overriding.

- relocate typeFilePath() global function as a member of IOobject
  for consistency with typeHeaderOk.

BUG: faSchemes, fvSchemes not marked as global file types

- caused issues with collated
2023-12-07 17:42:25 +01:00
269be2f4ea ENH: provide Time::NewGlobalTime factory methods (#3007)
- avoids clutter of argList::envGlobalPath() ...

ENH: allow temporary overwriting of output writeFormat

- allows switching for particular output routines

COMP: explicitly use TimePaths methods with Time

- this simplifies any overloading done at a later stage
2023-11-07 10:33:47 +01:00
98246a438e ENH: simplify calling of decomposition, support CompactListList
- combined most of the unweighted and weighted decomposition routines
  such that an empty weight field is treated as uniform weighting.
  This allows default parameters and cuts down on the number of
  decompose methods.

- for topology-driven decomposition, it is now possible to pass in the
  owner/neighbour connectivity as a CompactListList directly instead
  of first creating a labelListList (which was internally repacked into
  a CompactListList in many cases).
  However, multiLevelDecomp still uses unpacking (to avoid a larger
  reworking of code).

- support direct creation of some methods (eg, random, scotch etc)
  without a dictionary

- fix incorrect neighbour face weighting (fixes #3019)

ENH: relocate calcCellCells from decompositionMethod to globalMeshData

- makes it more universally available
2023-11-07 10:33:47 +01:00
29e2718162 ENH: add face/triFace contains(edge) method (#3004)
STYLE: use contains() and reduce reliance on edgeDirection -1/+1 values
2023-10-26 14:11:28 +02:00
d9727fad1c ENH: use updated HashTable methods 2023-10-11 18:11:37 +00:00
db16d80840 ENH: use objectRegistry/IOobjectList sorted instead of lookupClass
- in most cases a parallel-consistent order is required.
  Even when the order is not important, it will generally require
  fewer allocations to create a UPtrList of entries instead of a
  HashTable or even a wordList.
2023-07-31 20:11:32 +02:00
5397c9ac04 COMP: use csorted() instead of sorted() 2023-07-31 20:11:32 +02:00
36161e682a STYLE: FOAM_DEPRECATED_FOR instead of FOAM_DEPRECATED
- explains what the preferred replacement should be
2023-07-31 14:07:10 +02:00
8117cde596 ENH: use emplace_set, emplace_back to simplify code
- eg, for cloud fields, tmp emplace when reading fields etc.
2023-07-27 16:52:03 +02:00
642d8a9dfa COMP: guards around #define OMPI_SKIP_MPICXX (avoids compiler warnings) 2023-06-23 16:05:19 +02:00
f9d0895707 ENH: avoid spurious library loading for decomposePar, redistributePar
- individual processor Time databases are purely for internal logistics
  and should not be introducing any new library symbols: these will
  already have been loaded in the outer loop.
2023-06-19 17:05:45 +02:00
821d395259 ENH: use refPtr fileHandler in decomposeFaFields, faMeshReconstructor 2023-05-22 17:59:33 +02:00
505704d290 ENH: allow numberOfSubdomains to be optional in parallel
- allows for a missing or empty file
2023-05-22 17:47:20 +02:00
87cb811db2 COMP: fix library linkage (#2784), silence some unused variable warnings 2023-05-19 00:46:52 +02:00
b62e4b06fa ENH: add finite-area 'ignore' boundary condition
- this is a placeholder boundary BC for using with bad or illegal
  edges. It is currently functionally identical to zero-gradient.
  Naming and definition still subject to change.
2023-05-09 19:30:58 +02:00
e967305ef2 STYLE: use calculatedType() and zeroGradientType() methods 2023-05-02 13:34:12 +02:00
32df7c2e92 ENH: multiLevel: native scotch implementation of multi-level 2023-04-19 13:02:13 +00:00
475ed5cc32 STYLE: readOnProc/writeOnProc instead of 'valid' for IO 2023-04-04 15:04:26 +02:00
25bc7d65f7 STYLE: prefer REGISTER/NO_REGISTER instead of true/false for IOobject
- self-documenting
2023-03-10 14:16:32 +00:00
68bbd8f3a8 Merge remote-tracking branch 'origin/master' into develop 2023-02-21 10:21:31 +01:00
c9081d5daf BUG: globalIndex gather/scatter fails with multi-world (fixes #2706)
- was using UPstream::procIDs(), which returns the sub-ranks with
  respect to the parent communicator. This is normally just an
  identity list (single-world) but with multi-world the indexing
  is incorrect.  Use UPstream::allProcs() instead.
2023-02-20 16:15:44 +01:00
fb69a54bc3 ENH: avoid prior communication when using mapDistribute
- in most cases can simply construct mapDistribute with the sendMap
  and have it take care of communication and addressing for the
  corresponding constructMap.

  This removes code duplication, which in some cases was also using
  much less efficient mechanisms (eg, combineReduce on list of
  lists, or an allGatherList on the send sizes etc) and also
  reduces the number of places where Pstream::exchange/exchangeSizes
  is being called.

ENH: reduce communication in turbulentDFSEMInlet

- was doing an allGatherList to populate a mapDistribute.
  Now simply use PstreamBuffers mechanisms directly.
2023-02-14 23:22:55 +01:00
d597b3f959 STYLE: check iterator validity with good() instead of found()
- aligns better with other container checks
2023-02-10 17:12:48 +01:00
bebc6195a8 ENH: IOobjectOption isAnyRead() for checking against NO_READ
- encompasses isReadOptional or isReadRequired check

STYLE: allow LAZY_READ as a shorter synonym for READ_IF_PRESENT

- add helper for downgrading MUST_READ... to LAZY_READ
2023-01-31 12:45:38 +01:00
ffbad65538 ENH: replace triangleFuncs::intersectBb usage with boundBox::intersect 2022-11-24 12:21:01 +00:00
3384747f9b ENH: split off template-invariant part of indexedOctree node indexing
- code reduction, reinherit for dynamicIndexedOctree

ENH: additional OBJ writing, statistics
2022-11-24 12:21:01 +00:00
e5006a62d7 ENH: use simpler boundBox handling
- use default initialize boundBox instead of invertedBox
- reset() instead of assigning from invertedBox
- extend (three parameter version) and grow method
- inflate(Random) instead of extend + re-assigning
2022-11-24 12:21:01 +00:00
27c2cdc040 ENH: vector mag(), magSqr() methods - complementary to dist(), distSqr()
ENH: use direct access to pointHit as point(), use dist(), distSqr()

- if the pointHit has already been checked for hit(), can/should
  simply use point() noexcept access subsequently to avoid redundant
  checks. Using vector distSqr() methods provides a minor optimization
  (no itermediate temporary), but can also make for clearer code.

ENH: copy construct pointIndexHit with different index

- symmetric with constructing from a pointHit with an index

STYLE: prefer pointHit point() instead of rawPoint()
2022-11-24 12:21:01 +00:00
013f3cccc4 ENH: improve handling of finiteArea mesh with distributed roots
- in makeFaMesh, the serial fields are now only read on the master
  process and broadcast to the other ranks. The read+distribute is
  almost identical to that used in redistributePar, except that in
  this case entire fields are sent and not a zero-sized subset.

- improved internal faMesh checking for files so that the TryNew
  method works with distributed roots.
2022-11-20 19:59:52 +01:00
94c7e180fb ENH: more fault-tolerance in makeFaMesh decomposition
- if the volume faceProcAddressing is missing, it is not readily
  possible to determine equivalent area procAddressing.

  Instead of throwing an error, be more fault-tolerant by having it
  create with READ_IF_PRESENT and then detect and warn
  if there are problems.
2022-11-19 20:49:12 +01:00
6c6c8c5008 BUG: distributedTriSurfaceMesh: locally empty surface. Fixes #2612 2022-11-09 08:55:06 +00:00
70208a7399 ENH: use returnReduceAnd(), returnReduceOr() functions
DOC: document which MPI send/recv are associated with commType
2022-11-08 16:48:08 +00:00
473e14418a ENH: more consistent use of broadcast, combineReduce etc.
- broadcast           : (replaces scatter)
  - combineReduce       == combineGather + broadcast
  - listCombineReduce   == listCombineGather + broadcast
  - mapCombineReduce    == mapCombineGather + broadcast
  - allGatherList       == gatherList + scatterList

  Before settling on a more consistent naming convention,
  some intermediate namings were used in OpenFOAM-v2206:

    - combineReduce       (2206: combineAllGather)
    - listCombineReduce   (2206: listCombineAllGather)
    - mapCombineReduce    (2206: mapCombineAllGather)
2022-11-08 16:48:08 +00:00
9433898941 ENH: support construction of pointIndexHit from pointHit
STYLE: combine templated/non-templated headers (reduced clutter)

STYLE: use hitPoint(const point&) combined setter

- same as setHit() + setPoint(const point&)

ENH: expose and use labelOctBits::pack method for addressing
2022-10-31 18:36:14 +01:00
2c7a7b27a3 ENH: distributedTriSurfaceMesh: support distributed running 2022-10-26 17:15:51 +01:00
61deacd24d ENH: boundBox improvements (#2609)
- construct boundBox from Pair<point> of min/max limits,
  make sortable

- additional bounding box intersections (linePointRef), add noexcept

- templated access for boundBox hex-corners
  (used to avoid temporary point field).
  Eg, unrolled plane/bound-box intersection with early exit

- bounding box grow() to expand box by absolute amounts
  Eg,

      bb.grow(ROOTVSMALL);   // Or: bb.grow(point::uniform(ROOTVSMALL));
  vs
      bb.min() -= point::uniform(ROOTVSMALL);
      bb.max() += point::uniform(ROOTVSMALL);

- treeBoundBox bounding box extend with two or three parameters.
  The three parameter version includes grow(...) for reduced writing.
  Eg,

      bb = bb.extend(rndGen, 1e-4, ROOTVSMALL);

  vs
      bb = bb.extend(rndGen, 1e-4);
      bb.min() -= point::uniform(ROOTVSMALL);
      bb.max() += point::uniform(ROOTVSMALL);

  This also permits use as const variables or parameter passing.
  Eg,

      const treeBoundBox bb
      (
          treeBoundBox(some_points).extend(rndGen, 1e-4, ROOTVSMALL)
      );
2022-10-12 13:19:44 +02:00
d5cdc60a54 BUG: processorMeshes removeFiles does not remove collated (fixes #2607)
ENH: extend rmDir to handle removal of empty directories only

- recursively remove directories that only contain other directories
  but no other contents. Treats dead links as non-content.
2022-10-11 17:58:22 +02:00
bcd461926c BUG: invalid pointer reference for optional coordinate system lookup
- code remnant from separate lookup + construct of coordinateSystem
  (7b2bcfda0b).
  Apply consistent use of coordinateSystem::NewIfPresent to avoid
  these types of coding mishaps
2022-10-06 12:50:06 +02:00
7b2bcfda0b ENH: improved handling of coordinateSystems
- in continuation of #2565 (rotationCentre for surface output formats)
  it is helpful to also support READ_IF_PRESENT behaviour for the
  'origin' keyword.

  This can be safely used wherever the coordinate system definition
  is embedded within a sub-dictionary scope.

  Eg,
      dict1
      {
          coordinateSystem
          {
              origin (0 0 0);  // now optional here
              rotation ...;
          }
      }

   but remains mandatory if constructed without a sub-dict:

      dict2
      {
          origin (0 0 0);   // still mandatory
          e1  (1 0 0);
          e3  (0 0 1);
      }

   With this change, the "transform" sub-dictionary can written
   more naturally:

       formatOptions
       {
           vtk
           {
               scale 1000;  // m -> mm
               transform
               {
                   rotationCentre  (1 0 0);
                   rotation axisAngle;
                   axis    (0 0 1);
                   angle   -45;
               }
           }
       }

ENH: simplify handling of "coordinateSystem" dictionary lookups

- coordinateSystems::NewIfPresent method for optional entries:

    coordSysPtr_ = coordinateSystem::NewIfPresent(mesh, dict);

  Instead of

    if (dict.found(coordinateSystem::typeName, keyType::LITERAL))
    {
        coordSysPtr_ =
            coordinateSystem::New
            (
                mesh_,
                dict,
                coordinateSystem::typeName
            );
    }
    else
    {
        coordSysPtr_.reset();
    }

ENH: more consistent handling of priorities for binModels, forces (#2598)

- if the dictionaries are overspecified, give a 'coordinateSystem'
  entry a higher prioriy than the 'CofR' shortcuts.

  Was previously slightly inconsistent between the different models.
2022-10-04 15:51:27 +02:00
d938e01d7a ENH: refactor IOobject options
- IOobjectOption class encapsulates read/write, storage flags for
  lightweight handling, independent of objectRegistry etc.

ENH: add IOobject isReadRequired() and isReadOptional() queries

- encapsulates test of MUST_READ, MUST_READ_IF_MODIFIED,
  READ_IF_PRESENT for convenience / less clutter.

Example,

    if (isReadRequired() || (isReadOptional() && headerOk()))
    {
        ...
    }

Instead of

    if
    (
        (
            readOpt() == IOobject::MUST_READ
         || readOpt() == IOobject::MUST_READ_IF_MODIFIED
        )
     || (readOpt() == IOobject::READ_IF_PRESENT && headerOk())
    )
    {
        ...
    }
2022-10-04 15:51:26 +02:00
ea51c2c0e4 STYLE: return orientedType, Switch directly instead of const reference
- noexcept on some Time methods

ENH: pass through is_oriented() method for clearer coding

- use logical and/or/xor instead of bitwise versions (clearer intent)
2022-10-04 15:51:26 +02:00
a0282c7e41 ENH: prefer PtrList set/get/test instead of PtrList::operator() access
- clearer coding intent. Mark operator() as 'deprecated'

- add bounds checking to get(label) and set(label) methods.

  This gives failsafe behaviour for get() that is symmetric with
  HashPtrTable, autoPtr etc and aligns the set(label) methods
  for UPtrList, PtrList and PtrDynList.

- use top-level PtrList::clone() instead of cloning individual elements

ENH: support HashPtrTable set with refPtr/tmp (flexibility)
2022-09-22 11:50:51 +02:00
47e172e6ef ENH: add internal parRun guards to some UPstream methods
- simplifies coding
  * finishedRequest(), waitRequest(), waitRequests() with parRun guards
  * nRequests() is noexcept

- more consistent use of UPstream::defaultCommsType in branching
2022-09-22 11:50:50 +02:00
c4d18e97a3 ENH: additional methods for OBJstream
- write point fields
- writeLine (takes two points)
- writeFace (takes list of face loop points)
2022-07-19 11:17:51 +02:00
3d892ace29 STYLE: set readOpt(..), writeOpt(..) by parameter, not by assignment
STYLE: qualify format/version/compression with IOstreamOption not IOstream

STYLE: reduce number of lookups when scanning {fa,fv}Solution

STYLE: call IOobject::writeEndDivider as static
2022-07-19 11:17:47 +02:00
71246b94b7 ENH: minor update of particle methods 2022-07-08 11:13:00 +02:00
8e017fa63c STYLE: specify "U[IO]Pstream" instead of "[IO]Pstream" for (read|write)
- consistency. Replace some instances of 'slave' with proc
2022-07-08 11:13:00 +02:00
913f844eb6 BUG: reconstructPar: do not locate positions. See #2205.
Specific to the VOF-to-lagrangian FO is to generate particles
which potentially do not relate to the mesh. So here they
are preserved instead of trying to locate them on the
reconstructed mesh. Note: this has the same effect
of actually copying the file...
2022-06-15 17:46:29 +01:00