Commit Graph

576 Commits

Author SHA1 Message Date
2b5e73fbce BUG: incorrect face order/orientation in boundBox (issue #196)
- was fortunately not used anywhere previously
2016-07-28 07:00:33 +02:00
e2935fa680 Merge branch 'fix-systemcall' into 'develop'
replace system() call with vfork/exec combination (issue #185)

Tested systemCall function object, dynamicCode, but should be rechecked with IB+openmpi
@Prashant

See merge request !55
2016-07-26 15:26:00 +01:00
b460e096ae Merge branch 'feature-symlinks' into 'develop'
ENH: OSspecific - softlink handling (fixes #164)

Links are followed in most cases, with some notable exceptions:

- mv, mvBak:
  renames the link, not the underlying file/directory

- rmDir:
  remove the symlink to a directory, does not recurse into the
  underlying directory

See merge request !51
2016-07-26 15:25:33 +01:00
2f3945e6b3 STYLE: missing include in codeStream test dictionary 2016-07-15 09:05:44 +02:00
42b2086683 ENH: adapter for a list of C++ strings <-> a list of C-style strings
- Translate a list of C++ strings into C-style (argc, argv) pair.
- Translate C-style (argc, argv) pair to list of C++ strings.

Useful when interfacing to external C-code and some libraries
2016-06-16 08:22:53 +02:00
2dc31390df ENH: add some system information when outputting profiling
- basic cpuInfo (model identification, MHz, etc)
- process memInfo

- profiling is activated via the case system/controlDict by
  adding a "profiling" sub-dictionary.

  Simply add the following (everything enabled):

      profiling
      {}

  Which corresponds to the longer form:

      profiling
      {
          active      true;  // default: true
          cpuInfo     true;  // default: true
          memInfo     true;  // default: true
          sysInfo     true;  // default: true
      }

  This can be used to selectively disable any extra information
  (eg, you don't want anyone else to know what hardware was used).
2016-06-15 20:17:44 +02:00
c7b27f5af9 ENH: provide basic cpu-information
- can be useful later when trying to interpret run-times etc.

  Contains only the most basic information.
2016-06-15 12:38:46 +02:00
1452cc0827 BUG: ensight writers not catching special reserved characters (fixes #122)
- most notably the '%' which is used as a separator in places
  caused problems.

EHN: only use valid ensight file/variable names for writers

- fixed:   foamToEnsightParts, ensightSurfaceWriter
- pending: foamToEnsight

BUG: no geometry written for foamToEnsightParts with moving mesh (fixes #142)

- an incorrect path was causing the issue
2016-06-07 17:16:09 +01:00
5d29b49811 BUG: UOPstream indexes out of bounds after whitespace stripping (fixes #134)
- only affects transfer of C-style string with a single character
  remaining after whitespace stripping. Test added into Test-parallel.

- Note some idiosyncrasies in the behaviour:

      send                   |    receives
    -------------------------+-------------------------
        string("a b c")      |    string "a b c"
        string("a")          |    string "a"
        "a b c"              |    word   "abc"
        'd'                  |    char   'd'
        "d"                  |    char   'd'
        "d   "               |    char   'd'
2016-06-02 09:45:04 +02:00
fd9d801e2d GIT: Initial commit after latest foundation merge 2016-04-25 11:40:48 +01:00
e47179a70d applications/test/rigidBodyDynamics/pendulumAndSpring: Another slightly more complex test 2016-04-17 15:47:03 +01:00
8c6fa81eba vector::zero -> Zero 2016-04-16 18:34:41 +01:00
75c7b7b239 quaternion/septernion: Added multi- quaternion/septernion averaging
Using method based on
http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/20070017872.pdf
but simplified for the case where the quaternions are similar.
2016-04-16 15:59:05 +01:00
23a8779379 septernion: Changed definition of the forward transformation for consistency with spatialTransform
inline Foam::vector Foam::septernion::transformPoint(const vector& v) const
{
    return r().transform(v - t());
}

Now there is a 1:1 correspondence between septernion and
spatialTransform and a septernion constructor from spatialTransform
provided.

Additionally "septernion::transform" has been renamed
"septernion::transformPoint" to clarify that it transforms coordinate
points rather than displacements or other relative vectors.
2016-04-15 11:27:18 +01:00
a0170df6c1 rigidBodyDynamics: Removed quaternion counter and index: 'nw', 'wIndex'
Replaced with 'unitQuaterion()' virtual function to indicate if the
joint uses a unit quaternion to represent rotation.
2016-04-12 22:17:52 +01:00
315a1baad3 rigidBodyDynamics: Simplify handling of quaternions by maintaining a unit quaternion in the joint state field 'q'
'w' is now obtained from 'v' using the relation w = sqrt(1 - |sqr(v)|)
and 'v' is stored in the joint state field 'q' and integrated in the
usual manner but corrected using quaternion transformations.
2016-04-12 21:44:34 +01:00
5e6bdeea57 applications/test/rigidBodyDynamics/sphericalJoint: Test for the quaternion-based spherical joint 2016-04-12 16:37:52 +01:00
985506be28 applications/test/rigidBodyDynamics/spring: Updated comment 2016-04-12 16:37:26 +01:00
948add3e10 applications/test/rigidBodyDynamics/spring: Correct typo 2016-04-12 16:16:30 +01:00
f51dfc37f2 rigidBodyDynamics: Simplified the interface to the solvers 2016-04-12 12:57:31 +01:00
2870be400e rigidBodyDynamics/rigidBodySolvers: Added run-time selectable solvers to integrate the rigid-body motion
Currently supported solvers: symplectic, Newmark, CrankNicolson

The symplectic solver should only be used if iteration over the forces
and body-motion is not required.  Newmark and CrankNicolson both require
iteration to provide 2nd-order behavior.

See applications/test/rigidBodyDynamics/spring for an example of the
application of the Newmark solver.

This development is sponsored by Carnegie Wave Energy Ltd.
2016-04-12 11:33:20 +01:00
33be0fa564 rigidBodyDynamics/rigidBodyModelState: New class to hold the motion state of the rigid-body model
This is a more convenient way of maintaining the state or multiple
states (for higher-order integration), storing, retrieving and passing
between processors.
2016-04-11 19:01:16 +01:00
be567300c3 rigidBodyDynamics/restraints: Complete dictionary IO 2016-04-11 11:45:51 +01:00
1f51c8a89d rigidBodyDynamics: Added support for restraints and a linear spring with damper
applications/test/rigidBodyDynamics/spring: Test of the linear spring with damper restraint
Damped simple harmonic motion of a weight on a spring is simulated and
the results compared with analytical solution

    Test-spring
    gnuplot spring.gnuplot
    evince spring.eps

This development is sponsored by Carnegie Wave Energy Ltd.
2016-04-10 23:12:07 +01:00
01d503b1c0 applications/test/rigidBodyDynamics/pendulum: Cleanup 2016-04-10 23:07:23 +01:00
8ca752eb79 applications/test/rigidBodyDynamics/pendulum/pendulum: Corrected joint type 2016-04-08 18:03:51 +01:00
9ffaed8fd8 rigidBodyDynamics/bodies/jointBody: Special body to support elements of composite joints 2016-04-08 17:16:01 +01:00
8b6fe62f88 rigidBodyModel: Added operator<<(Ostream&, const rigidBodyModel&) 2016-04-08 17:02:02 +01:00
93f2f0d41a rigidBodyDynamics: Simplified the IO of bodies 2016-04-08 16:56:48 +01:00
77ed073bdb rigidBodyDynamics/bodies: Complete set of clone functions to support copy construction and assignment 2016-04-07 23:04:17 +01:00
0c7ce8938b rigidBodyDynamics: Added dictionary-based IO of the rigidBodyModel 2016-04-07 21:47:08 +01:00
343136e6cc applications/test/rigidBodyDynamics/pendulum: Simplified using sphere constructor and body lookup by name 2016-04-04 17:08:20 +01:00
e50d8ece57 applications/test/rigidBodyDynamics/pendulum: Add a test for merging bodies 2016-04-04 09:26:37 +01:00
4344a73231 applications/test/rigidBodyDynamics/pendulum: Very simple test/demonstration of the rigidBodyDynamics library
Simple swinging pendulum simulation with 1-DoF.  The motion is integrated
    using a symplectic method for just over 2-periods.
2016-04-03 22:17:10 +01:00
6e573ad7e8 UList: Rationalize assignment (shallow-copy vs deep-copy)
//- Disallow default shallow-copy assignment
    //
    //  Assignment of UList<T> may need to be either shallow (copy pointer)
    //  or deep (copy elements) depending on context or the particular type
    //  of list derived from UList and it is confusing and prone to error
    //  for the default assignment to be either.  The solution is to
    //  disallow default assignment and provide separate 'shallowCopy' and
    //  'deepCopy' member functions.
    void operator=(const UList<T>&) = delete;

    //- Copy the pointer held by the given UList.
    inline void shallowCopy(const UList<T>&);

    //- Copy elements of the given UList.
    void deepCopy(const UList<T>&);
2016-04-03 10:26:05 +01:00
4831f8146c applications/test/Matrix/Test-Matrix.C: Corrected typo 2016-04-02 23:28:03 +01:00
88bd912374 Pstream: optimisation of data exchange
Contributed by Mattijs Janssens.

1. Any non-blocking data exchange needs to know in advance the sizes to
   receive so it can size the buffer.  For "halo" exchanges this is not
   a problem since the sizes are known in advance but or all other data
   exchanges these sizes need to be exchanged in advance.

   This was previously done by having all processors send the sizes of data to
   send to the master and send it back such that all processors
   - had the same information
   - all could work out who was sending what to where and hence what needed to
     be received.

   This is now changed such that we only send the size to the
   destination processor (instead of to all as previously). This means
   that
   - the list of sizes to send is now of size nProcs v.s. nProcs*nProcs before
   - we cut out the route to the master and back by using a native MPI
     call

   It causes a small change to the API of exchange and PstreamBuffers -
   they now return the sizes of the local buffers only (a labelList) and
   not the sizes of the buffers on all processors (labelListList)

2. Reversing the order of the way in which the sending is done when
   scattering information from the master processor to the other
   processors. This is done in a tree like fashion. Each processor has a
   set of processors to receive from/ send to. When receiving it will
   first receive from the processors with the least amount of
   sub-processors (i.e. the ones which return first). When sending it
   needs to do the opposite: start sending to the processor with the
   most amount of sub-tree since this is the critical path.
2016-04-02 18:32:11 +01:00
d4046bb85e LLTMatrix, LUscalarMatrix, QRMatrix: Provided consistent 'solve' interface 2016-03-24 19:13:04 +00:00
e9199c6e14 QRMatrix: New class to provide QR-decomposition by Householder reflection
This development is sponsored by Carnegie Wave Energy Ltd.
2016-03-24 14:49:25 +00:00
0945cfd35f LLTMatrix: New matrix form to support Cholesky decomposition
of symmetric positive-definite matrices and the solution of associated
linear systems.
2016-03-23 15:33:03 +00:00
730f89dc9d Use Zero rather than pTraits<Type>::zero unless a static typed '0' is required 2016-03-22 17:46:52 +00:00
caf8776f9b SquareMatrix, SymmetricSquareMatrix: Changed the constructor from size to require only n
This avoids the need to check that the m and n dimensions are the same.
2016-03-22 14:13:48 +00:00
445ce0f2ce Test-Matrix: Removed timing test 2016-03-20 19:50:23 +00:00
67a51b1fdd Matrix: Added (i, j) addressing to allow support for addressing blocks of the matrix
This change brings OpenFOAM into line with the standard matrix
addressing in other C++ libraries for better interoperability.
2016-03-20 19:44:29 +00:00
b4ebcd770f quaternion: Added generalized construction from and conversion to Euler-angles
The particular rotation sequence is specified via the enumeration:

    //- Euler-angle rotation sequence
    enum rotationSequence
    {
        ZYX, ZYZ, ZXY, ZXZ, YXZ, YXY, YZX, YZY, XYZ, XYX, XZY, XZX
    };

and provided as an argument to the constructor from Euler-angles

    //- Construct a quaternion given the three Euler angles:
    inline quaternion
    (
        const rotationSequence rs,
        const vector& angles
    );

and conversion to Euler-angles:

    //- Return a vector of euler angles corresponding to the
    //  specified rotation sequence
    inline vector eulerAngles(const rotationSequence rs) const;
2016-03-14 08:07:42 +00:00
9a8a1c83b0 messageStream: Added DebugInfo and DebugInFunction:
DebugInfo:
    Report an information message using Foam::Info if the local debug
    switch is true

DebugInFunction:
    Report an information message using Foam::Info for FUNCTION_NAME in
    file __FILE__ at line __LINE__ if the local debug switch is true
2016-03-04 11:30:13 +00:00
95d146ecdf Rationalized the indentation of C-preprocessor directives 2016-02-29 15:42:03 +00:00
f4ba71ddd0 OpenFOAM libraries: Updated to use the new const-safe tmp 2016-02-26 08:13:59 +00:00
350d03246e scripts: Reformat with consistent section separators 2016-02-15 18:30:24 +00:00
04b00f4f05 pplications/test/ListOps/Make/options: Removed extraneous backslash 2016-02-08 16:33:56 +00:00