Commit Graph

242 Commits

Author SHA1 Message Date
dcb1a95e35 MRG: Integrated Foundation code to commit 7d6845d 2017-03-23 14:33:33 +00:00
436ec1cf1f MRG: Integrated Foundation code to commit ba4dbed 2017-03-23 12:11:49 +00:00
04c3d535b0 MRG: Integrated Foundation code to commit 47bd8e1 2017-03-23 10:12:38 +00:00
cbf793fca2 ENH: Updated header file documentation 2017-03-21 09:40:35 +00:00
c1ca2f4a38 BUG: missing chdir in Allwclean for wallFunctionTable
STYLE: improve consistency in Allwclean scripts
2017-02-23 01:07:10 +01:00
d2be645483 thermophysicalProperties: New base-class for liquidProperties and in the future gasProperties
Description
    Base-class for thermophysical properties of solids, liquids and gases
    providing an interface compatible with the templated thermodynamics
    packages.

liquidProperties, solidProperties and thermophysicalFunction libraries have been
combined with the new thermophysicalProperties class into a single
thermophysicalProperties library to simplify compilation and linkage of models,
libraries and applications dependent on these classes.
2017-02-18 21:53:20 +00:00
c52e4b58a1 thermophysicalModels: Changed specie thermodynamics from mole to mass basis
The fundamental properties provided by the specie class hierarchy were
mole-based, i.e. provide the properties per mole whereas the fundamental
properties provided by the liquidProperties and solidProperties classes are
mass-based, i.e. per unit mass.  This inconsistency made it impossible to
instantiate the thermodynamics packages (rhoThermo, psiThermo) used by the FV
transport solvers on liquidProperties.  In order to combine VoF with film and/or
Lagrangian models it is essential that the physical propertied of the three
representations of the liquid are consistent which means that it is necessary to
instantiate the thermodynamics packages on liquidProperties.  This requires
either liquidProperties to be rewritten mole-based or the specie classes to be
rewritten mass-based.  Given that most of OpenFOAM solvers operate
mass-based (solve for mass-fractions and provide mass-fractions to sub-models it
is more consistent and efficient if the low-level thermodynamics is also
mass-based.

This commit includes all of the changes necessary for all of the thermodynamics
in OpenFOAM to operate mass-based and supports the instantiation of
thermodynamics packages on liquidProperties.

Note that most users, developers and contributors to OpenFOAM will not notice
any difference in the operation of the code except that the confusing

    nMoles     1;

entries in the thermophysicalProperties files are no longer needed or used and
have been removed in this commet.  The only substantial change to the internals
is that species thermodynamics are now "mixed" with mass rather than mole
fractions.  This is more convenient except for defining reaction equilibrium
thermodynamics for which the molar rather than mass composition is usually know.
The consequence of this can be seen in the adiabaticFlameT, equilibriumCO and
equilibriumFlameT utilities in which the species thermodynamics are
pre-multiplied by their molecular mass to effectively convert them to mole-basis
to simplify the definition of the reaction equilibrium thermodynamics, e.g. in
equilibriumCO

    // Reactants (mole-based)
    thermo FUEL(thermoData.subDict(fuelName)); FUEL *= FUEL.W();

    // Oxidant (mole-based)
    thermo O2(thermoData.subDict("O2")); O2 *= O2.W();
    thermo N2(thermoData.subDict("N2")); N2 *= N2.W();

    // Intermediates (mole-based)
    thermo H2(thermoData.subDict("H2")); H2 *= H2.W();

    // Products (mole-based)
    thermo CO2(thermoData.subDict("CO2")); CO2 *= CO2.W();
    thermo H2O(thermoData.subDict("H2O")); H2O *= H2O.W();
    thermo CO(thermoData.subDict("CO")); CO *= CO.W();

    // Product dissociation reactions

    thermo CO2BreakUp
    (
        CO2 == CO + 0.5*O2
    );

    thermo H2OBreakUp
    (
        H2O == H2 + 0.5*O2
    );

Please report any problems with this substantial but necessary rewrite of the
thermodynamic at https://bugs.openfoam.org

Henry G. Weller
CFD Direct Ltd.
2017-02-17 11:22:14 +00:00
5dd24f4968 Removed unhelpful clutter 2017-01-26 17:47:24 +00:00
7f2104c9a7 foamDictionary: Removed unnecessary spaces and blank lines from output
Resolves bug-report https://bugs.openfoam.org/view.php?id=2422
2017-01-05 20:19:30 +00:00
0087bb8027 foamList: removed '-lreactingMultiphaseSystem' to avoid duplicate name conflict
Resolves bug-report https://bugs.openfoam.org/view.php?id=2398
2016-12-16 10:12:09 +00:00
38e40ffb95 BUG: foamList - removed link against randomProcesses lib. Fixes #343 2016-12-15 16:31:38 +00:00
83dab87568 ENH: foamList lib updates 2016-12-15 14:26:56 +00:00
28bd150db6 ENH: foamList - updated link libs to avoid error on exiting 2016-12-12 12:37:57 +00:00
c0f44ac4f3 MRG: Integrated foundation code 2016-12-12 12:10:29 +00:00
1d1f71f7cd foamDictionary: Added support for manipulating lists of dictionaries
- provides support for manipulating polyMesh/boundary

  - changed behaviour of disableFunctionEntries option to preserve
    #include

  - dictionary: added reading of lists of dictionaries.
    + each list element may be accessed using the 'entryDDD' keyword
      according to their list index.

Patch contributed by Mattijs Janssens
2016-11-25 20:33:03 +00:00
1f826361c6 STYLE: Consistency updates to change input of <var>Name to <var>. Fixes #306 2016-11-22 14:50:33 +00:00
80db302666 Allwmake: Remove 'set -x' which generates a lot of noise
'set -x' should be used for debugging.

Added command printing into wmake and Allwmake as a replacement for
'set -x' to log current target.
2016-11-13 18:08:22 +00:00
f6e170dcd3 foamDictionary: Corrected error message type 2016-11-11 17:21:13 +00:00
af81184ecf MRG: Resolve conflict with latest foundation merge 2016-10-26 15:37:15 +01:00
d2b96d88da foamDictionary: Added '-diff <dict>' option
- Write differences with respect to the specified dictionary
    (or sub entry if -entry specified)

  - Write the differences with respect to a template dictionary:
      foamDictionary 0/U -diff $FOAM_ETC/templates/closedVolume/0/U

  - Write the differences in boundaryField with respect to a
    template dictionary:
      foamDictionary 0/U -diff $FOAM_ETC/templates/closedVolume/0/U \
        -entry boundaryField

Patch contributed by Mattijs Janssens
2016-10-18 18:23:24 +01:00
70be3aa189 foamDictionary: New '-remove' to remove a dictionary entry
Patch contributed by Mattijs Janssens
2016-10-07 17:35:39 +01:00
bd0e982d99 MRG: Initial commit after latest Foundation merge 2016-09-30 11:16:28 +01:00
b9940cbbb1 COMP: Multiple changes - first clean build after latest merge - UNTESTED 2016-09-23 15:36:53 +01:00
49d3b6eae9 foamList: Added missing -I$(LIB_SRC)/meshTools/lnInclude needed for recent changes to AMI 2016-09-20 14:51:13 +01:00
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
78bbfc4409 COMP: foamDebugSwitches: support for missing randomProcesses. Fixes #213. 2016-08-19 10:46:53 +01:00
8bb78dda60 ENH: provide a vfork/exec version of system (issue #185)
The normal library system() command uses 'fork', which causes
problems on IB+OPENMPI.

STYLE: add Foam:: qualifier to system calls to make them easier to spot.
2016-07-18 13:37:39 +02:00
dea6a3c6e8 wmake/Allwmake: Completed support for targetType 'objects'
Patch contributed by Mattijs Janssens
2016-06-24 15:25:11 +01:00
6a53ed41ba Doxygen documentation: Standardized the 'See also' heading 2016-06-17 17:31:34 +01:00
1319df48d9 Rationalized Doxygen documentation of command-line options 2016-06-17 09:11:58 +01:00
2e206db93c foamList: Remove dependency on utility libraries 2016-06-17 07:37:43 +01:00
31e09c82da foamList: Avoid linking optional libraries 2016-06-16 08:09:49 +01:00
6ed05f0cd3 STYLE: mention suppression of banner for surfaceMeshInfo, ... (issue #125) 2016-07-06 07:43:05 +02:00
cbbb8bbdad foamList: Complete set of included libraries 2016-06-15 14:23:14 +01:00
dc305b04f3 foamList: Added support for listing scalar and vector field boundary conditions
Usage: foamList [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -compressibleTurbulenceModels
                    List compressible turbulenceModels
  -functionObjects  List functionObjects
  -fvOptions        List fvOptions
  -incompressibleTurbulenceModels
                    List incompressible turbulenceModels
  -noFunctionObjects
                    do not execute functionObjects
  -registeredSwitches
                    List switches registered for run-time modification
  -scalarBCs        List scalar field boundary conditions (fvPatchField<scalar>)
  -switches         List switches declared in libraries but not set in
                    etc/controlDict
  -unset            List switches declared in libraries but not set in
                    etc/controlDict
  -vectorBCs        List vector field boundary conditions (fvPatchField<vector>)
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage
2016-06-14 17:43:31 +01:00
fbc0d4f4f1 foamList: Added support for listing fvOptions, functionObjects and turbulence models
Usage: foamList [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -compressibleTurbulenceModels
                    List compressible turbulenceModels
  -functionObjects  List functionObjects
  -fvOptions        List fvOptions
  -incompressibleTurbulenceModels
                    List incompressible turbulenceModels
  -noFunctionObjects
                    do not execute functionObjects
  -registeredSwitches
                    List switches registered for run-time modification
  -switches         List switches declared in libraries but not set in
                    etc/controlDict
  -unset            List switches declared in libraries but not set in
                    etc/controlDict
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage
2016-06-14 16:45:27 +01:00
fda11f60b1 foamListTimes: moved to applications/utilities/miscellaneous/foamListTimes 2016-06-13 16:42:25 +01:00
55782e2868 foamList: Updated handling of switches and removed the '-redundant' option which does not work 2016-06-11 15:24:01 +01:00
29bff520a4 foamDictionary: Added -value option to print the value associated with an entry 2016-06-10 20:23:46 +01:00
533135ebd4 foamDictionary: Added -expand and -includes options
Replaces expandDictionary utility
2016-06-10 17:39:16 +01:00
c8188265f1 foamDebugSwitches -> foamList -debug 2016-06-10 13:34:58 +01:00
0aa4d70b9d applications/utilities: FOAM_USER_APPBIN -> FOAM_APPBIN 2016-06-10 10:35:57 +01:00
c93dcf98a6 applications/utilities/miscellaneous/foamDictionary/Make/options: Removed debug options 2016-06-07 16:27:22 +01:00
d984a96645 foamDictionary: New utility to print and manipulate dictionary entries
Replaces the dictionary access functionality of foamInfoExec and
provides additional options to edit individual entries.
Contributed by Mattijs Janssens
2016-06-03 19:24:05 +01:00
dd281330bc foamInfoExec: Time listing functionality superseded by foamListTimes 2016-06-03 19:23:27 +01:00
7c45066996 includeEntry, includeEtcEntry, includeIfPresentEntry: report -> log
for consistency with the 'Log' macro.
2016-05-31 17:17:24 +01:00
e4dc50dcb0 postProcessing: Replaced 'foamCalc' and the 'postCalc' utilities
with the more general and flexible 'postProcess' utility and '-postProcess' solver option

Rationale
---------

Both the 'postProcess' utility and '-postProcess' solver option use the
same extensive set of functionObjects available for data-processing
during the run avoiding the substantial code duplication necessary for
the 'foamCalc' and 'postCalc' utilities and simplifying maintenance.
Additionally consistency is guaranteed between solver data processing
and post-processing.

The functionObjects have been substantially re-written and generalized
to simplify development and encourage contribution.

Configuration
-------------

An extensive set of simple functionObject configuration files are
provided in

OpenFOAM-dev/etc/caseDicts/postProcessing

and more will be added in the future.  These can either be copied into
'<case>/system' directory and included into the 'controlDict.functions'
sub-dictionary or included directly from 'etc/caseDicts/postProcessing'
using the '#includeEtc' directive or the new and more convenient
'#includeFunc' directive which searches the
'<etc>/caseDicts/postProcessing' directories for the selected
functionObject, e.g.

functions
{
    #includeFunc Q
    #includeFunc Lambda2
}

'#includeFunc' first searches the '<case>/system' directory in case
there is a local configuration.

Description of #includeFunc
---------------------------

    Specify a functionObject dictionary file to include, expects the
    functionObject name to follow (without quotes).

    Search for functionObject dictionary file in
    user/group/shipped directories.
    The search scheme allows for version-specific and
    version-independent files using the following hierarchy:
    - \b user settings:
      - ~/.OpenFOAM/\<VERSION\>/caseDicts/postProcessing
      - ~/.OpenFOAM/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is set):
      - $WM_PROJECT_SITE/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_SITE/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is not set):
      - $WM_PROJECT_INST_DIR/site/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_INST_DIR/site/caseDicts/postProcessing
    - \b other (shipped) settings:
      - $WM_PROJECT_DIR/etc/caseDicts/postProcessing

    An example of the \c \#includeFunc directive:
    \verbatim
        #includeFunc <funcName>
    \endverbatim

postProcess
-----------

The 'postProcess' utility and '-postProcess' solver option provide the
same set of controls to execute functionObjects after the run either by
reading a specified set of fields to process in the case of
'postProcess' or by reading all fields and models required to start the
run in the case of '-postProcess' for each selected time:

postProcess -help

Usage: postProcess [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

 pimpleFoam -postProcess -help

Usage: pimpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

The functionObjects to execute may be specified on the command-line
using the '-func' option for a single functionObject or '-funcs' for a
list, e.g.

postProcess -func Q
postProcess -funcs '(div(U) div(phi))'

In the case of 'Q' the default field to process is 'U' which is
specified in and read from the configuration file but this may be
overridden thus:

postProcess -func 'Q(Ua)'

as is done in the example above to calculate the two forms of the divergence of
the velocity field.  Additional fields which the functionObjects may depend on
can be specified using the '-field' or '-fields' options.

The 'postProcess' utility can only be used to execute functionObjects which
process fields present in the time directories.  However, functionObjects which
depend on fields obtained from models, e.g. properties derived from turbulence
models can be executed using the '-postProcess' of the appropriate solver, e.g.

pisoFoam -postProcess -func PecletNo

or

sonicFoam -postProcess -func MachNo

In this case all required fields will have already been read so the '-field' or
'-fields' options are not be needed.

Henry G. Weller
CFD Direct Ltd.
2016-05-28 18:58:48 +01:00
67de20df25 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
0f17d95410 foamDebugSwitches: Updated for changes in functionObjects 2016-05-06 17:41:56 +01:00
32762aa1f9 Change field loop index from "fieldI" to "fieldi" 2016-05-02 18:20:48 +01:00