Commit Graph

1280 Commits

Author SHA1 Message Date
a27af5e369 ENH: add optional control to use clang lld linker (#2449)
Eg,
    export WM_COMPILER=Clang130
    export WM_COMPILE_CONTROL="version=13.0 +lld"

- also support the mold linker (+mold) for clang

STYLE: report as 'link' stage instead of 'ld' in short messages
2022-04-29 11:44:28 +02:00
2336e4a4e6 ENH: topoSet: added comment 2022-04-14 09:17:48 +01:00
fd2544b27e Merge remote-tracking branch 'origin/master' into develop 2022-03-13 22:37:22 +01:00
ed73bcbc33 TUT: update keywords, fix spurious annotated dictionary item (#2401) 2022-03-13 22:34:57 +01:00
c3e14ffdd5 ENH: refactor coordSet writers (#2347)
- the very old 'writer' class was fully stateless and always templated
  on an particular output type.

  This is now replaced with a 'coordSetWriter' with similar concepts
  as previously introduced for surface writers (#1206).

  - writers change from being a generic state-less set of routines to
    more properly conforming to the normal notion of a writer.

  - Parallel data is done *outside* of the writers, since they are used
    in a wide variety of contexts and the caller is currently still in
    a better position for deciding how to combine parallel data.

ENH: update sampleSets to sample on per-field basis (#2347)

- sample/write a field in a single step.

- support for 'sampleOnExecute' to obtain values at execution
  intervals without writing.

- support 'sets' input as a dictionary entry (as well as a list),
  which is similar to the changes for sampled-surface and permits use
  of changeDictionary to modify content.

- globalIndex for gather to reduce parallel communication, less code

- qualify the sampleSet results (properties) with the name of the set.
  The sample results were previously without a qualifier, which meant
  that only the last property value was actually saved (previous ones
  overwritten).

  For example,
  ```
    sample1
    {
        scalar
        {
            average(line,T) 349.96521;
            min(line,T)     349.9544281;
            max(line,T)     350;
            average(cells,T) 349.9854619;
            min(cells,T)    349.6589286;
            max(cells,T)    350.4967271;
            average(line,epsilon) 0.04947733869;
            min(line,epsilon) 0.04449639927;
            max(line,epsilon) 0.06452856475;
        }
        label
        {
            size(line,T)    79;
            size(cells,T)   1720;
            size(line,epsilon) 79;
        }
    }
  ```

ENH: update particleTracks application

- use globalIndex to manage original parcel addressing and
  for gathering. Simplify code by introducing a helper class,
  storing intermediate fields in hash tables instead of
  separate lists.

ADDITIONAL NOTES:

- the regionSizeDistribution largely retains separate writers since
  the utility of placing sum/dev/count for all fields into a single file
  is questionable.

- the streamline writing remains a "soft" upgrade, which means that
  scalar and vector fields are still collected a priori and not
  on-the-fly.  This is due to how the streamline infrastructure is
  currently handled (should be upgraded in the future).
2022-03-10 19:41:22 +01:00
5e2d8d6ed2 ENH: snappyHexMesh: multi-stage layer addition, automatic hole closure
Automatic hole closure:
- introduces 'holeToFace' topoSet source
- used when detecting a 'leak-path'
- creates additional baffles to close the leak

Multi-stage layer addition:
- Can add layers in multiple passes

See issues: #2403, #2404
2022-03-10 14:20:07 +00:00
666e5f6dc4 GIT: remove stray file, fix server documentation path 2022-03-02 15:12:59 +01:00
ff8518a89a ENH: snappyHexMesh: express small regions. Fixes #2379
Extend selection of small cells to use absolute cell count
2022-02-24 09:44:53 +00:00
eb2b9b2823 ENH: createPatch: sample dictionary. See #1361. 2022-02-17 10:34:13 +00:00
19398ded1c CONFIG: align adios2 settings with shipped ThirdParty version (#2353) 2022-02-04 09:01:32 +01:00
b874dc74b0 DEFEATURE: remove support for jplot (defunct) 2022-01-20 17:13:28 +01:00
f5eace394b DOC: Corrected online doxygen links. Fixes #2326 2022-01-14 14:33:45 +00:00
91b5525749 CONFIG: incorrect lib-name handling (fixes #2322) 2022-01-11 11:24:24 +01:00
34e226dfe3 RELEASE: updated completion cache 2021-12-20 18:57:43 +00:00
14aeaf8dab RELEASE: Updated version to v2112 2021-12-20 18:57:43 +00:00
a2014242cf RELEASE: Updated headers for v2112 2021-12-20 14:18:01 +00:00
b0748af9f6 CONFIG: update versions
- ADIOS2-2.7.1      latest
- CGAL-4.14.3       latest without c++14 requirement
- ParaView-v5.10.0  final (or RC2)
- boost_1_74_0      newest is 1_77_0 but had problems with gcc-4.8.5
- fftw-3.3.10       bugfix
- openmpi-4.1.2     latest
- scotch_6.1.0 (no change) - dgraph regression in 6.1.2
- kahip-3.14        latest
2021-12-15 19:14:44 +01:00
2f07de03ff COMP: add -pthread for AMD compiler rule
- https://github.com/spack/spack/pull/27949

COMP: respect FOAM_BUILDROOT for wmake -queue

STYLE: fix stray paraview setting
2021-12-15 19:13:27 +01:00
c47eb2fe80 TUT: replace turbulentTemperatureCoupledBaffleMixed boundary condition
The turbulentTemperatureCoupledBaffleMixed boundary condition
has been superseded by the turbulentTemperatureRadCoupledMixed condition

TUT: injectorPipe: remove an unused entry

TUT: waveMakerFlap: remove uncompressed entry
2021-12-15 10:17:04 +00:00
eb3c806ff9 COMP: dynamicCode: add missing default constructor
Used copy constructor for dictionary. Probably not
necessary.
2021-12-13 13:20:04 +00:00
510ffb3322 ENH: code reduction, improvements for expressions
- literal lookups only for expression strings

- code reduction for setExprFields.

- changed keyword "condition" to "fieldMask" (option -field-mask).
  This is a better description of its purpose and avoids possible
  naming ambiguities with functionObject triggers (for example)
  if we apply similar syntax elsewhere.

BUG: erroneous check in volumeExpr::parseDriver::isResultType()

- not triggered since this method is not used anywhere
  (may remove in future version)
2021-12-10 14:46:21 +00:00
b25e1486de CONFIG: adjust paraview libs, intelmpi handling
- fix overly aggressive match in the API value

- allow `INTELMPI*` generic value, this can be used to specify something
  like INTELMPI_custom and populate the corresponding wmake rule
  manually

STYLE: mention FOAM_BUILDROOT in wmake -help-full output

STYLE: adjust openfoam shell session welcome information

- adjust internal variable names to reduce collision potential

- improve handling of openfoam -etc=...
2021-12-07 15:22:32 +01:00
9a5125111e ENH: add coded Function1 (#2282)
- update coded templates with qualified names

GIT: add in missing PatchFunction1 constant() method

- was missed in a previous commit
2021-12-03 20:56:10 +01:00
e6f4ae927a LINT: script not marked as bash-specific
CONFIG: cleanup additional build-related env variables
2021-12-03 15:32:37 +01:00
f7c7fa94a3 ENH: add Function1 constant() member
- marks if the value is considered to be independent of 'x'.
  Propagate into PatchFunction1 instead ad hoc checks there.

- adjust method name in PatchFunction1 to 'whichDb()' to reflect
  final changes in Function1 method names.

ENH: add a Function1 'none' placeholder function

- This is principally useful for interfaces that expect a Function1
  but where it is not necessarily used by a particular submodel.

TUT: update Function1 creation to use objectRegistry
2021-12-03 15:32:37 +01:00
30a2fa4b27 BUG: dsmcFields fails with scoped field names 2021-11-26 11:22:36 +00:00
098aec4962 ENH: Function1's - added objectRegistry access 2021-11-26 11:22:36 +00:00
fd82f3e47a ENH: distinguish between compressible/incompressible coded source
- previously had codeAddSup used for both incompressible and
  compressible source terms. However, it was not actually possible to
  use it for compressible sources since any references to the 'rho'
  parameter would cause a compilation error for the incompressible case.

  Added 'codeAddSupRho' to distinguish the compressible case.
  User must supply one or both of them on input.
2021-11-09 21:48:42 +01:00
2698cab01c ENH: extend use of WM_COMPILER_CONTROL to manage compiler versions
- for compilers such as gcc and clang, may have several different
  variants installed on the computer. Use WM_COMPILER_CONTROL to
  specify the preferred variant.

  Eg,
      WM_COMPILER=Gcc
      WM_COMPILER_CONTROL="version=8"

      will compile with "gcc-8" and "g++-8"

  Good practice would be to tag output directory names with the
  version too. Eg

      WM_COMPILER=Clang110
      WM_COMPILER_CONTROL="version=11.0"

STYLE: modify message for change of gcc -> clang (darwin)
2021-11-02 17:30:06 +01:00
227b3976ba BUG: collated: threaded writing accesses out-of-scope. Fixes #2257. 2021-11-02 14:26:30 +00:00
435be2e5ec CONFIG: improve flexibility of MPI specification
- it is now possible to include the selected mpi version in the
  top-level bashrc or prefs.sh file. For example,

      WM_MPLIB=OPENMPI-4.1.1  or  WM_MPLIB=openmpi-4.1.1

  after evaluation of the config.sh/mpi, this will define

      WM_MPLIB=OPENMPI-4.1.1  and  FOAM_MPI=openmpi-4.1.1

  During the wmake, the mpi-rules will first load the MPI 'family'
  rules (OPENMPI in this example) before trying to load
  version-specific rules if they exist.

  NOTE: the regular user-defined prefs system is unaffected by this
  change. This means it is still possible to use a file such as
  'prefs.openmpi' to define the preferred version instead or as well.
  However, it does mean inconsistent naming can be specified.
  For example, specify WM_MPLIB=OPENMPI-4.1.1 at the top-level but
  actually have FOAM_MPI=openmpi-4.0.6 in the prefs.openmpi file.
  This will make the value of WM_MPLIB misleading.

CONFIG: foamConfigurePaths support for sys-openmpi major version

CONFIG: cleanup any shadow env variables
2021-10-29 17:04:51 +02:00
c2697f466d CONFIG: update c++ standard, some compiler rules (partially addresses #2209)
- migrate to c++14 for most compilers *except* gcc.
  There are still many systems in use with gcc-4.8.5, which does not
  support c++14.

- initial rules for nvidia compilers (pgi is will soon be defunct).
  Not fully tested...

CONFIG: provide fallback value for the user directory name

- in containers may have an unset USER env variable.
  Default to 'user' to prevent ugly looking directory names.
2021-10-21 15:31:05 +02:00
4a0646451d CONFIG: accept '-lib' for foamCleanPath
- simplfies differences for OSX
2021-10-18 14:58:17 +02:00
16d48ed047 CONFIG: improve robustness/flexibility for MPI config handling
- use orte-info to determine prefix/libdir for openmpi.
  This removes a run-time dependency on mpicc, which is actually
  only needed for building with MPI (not running with MPI).
  The corresponding openmpi devel package (deb/rpm) will not
  necessarily be installed on a particular system.

- retain mpicc logic if the new logic using orte-info does not
  deliver an answer. Final fallback to using 'orterun' to
  infer prefix/libdir.

- Additional logic for intel and msmpi to make it easier to
  locate these vendor packages within ThirdParty
  (ie, under ThirdParty/opt/...)

CONFIG: improve robustness

- add check for absolute path when adding PATH/LD_LIBRARY_PATH etc.

- prefix more variables with '_foam*' to prevent accidental overwrite
  of userspace shell variables when sourcing
2021-10-18 11:34:02 +02:00
f89fb3e066 CONFIG: adjust ordering of library paths (#2200)
- previously OpenFOAM library paths were set before adding in
  MPI-specific elements. However, this may mask some libraries.

  |  New library order  |  Old library order  |
  |---------------------|---------------------|
  |  user-lib (serial)  |  various 3rd-party  |
  |  site-lib (serial)  |  foam-lib (mpi)     |
  |  foam-lib (mpi)     |  ext-lib (mpi)      |
  |  foam-lib (serial)  |  system mpi-libs    |
  |  ext-lib  (mpi)     |  user-lib (serial)  |
  |  ext-lib  (serial)  |  site-lib (serial)  |
  |  various 3rd-party  |  foam-lib (serial)  |
  |  system mpi-libs    |  ext-lib (serial)   |
  |  dummy              |  dummy              |
2021-09-07 16:35:34 +02:00
11e0db96d3 ENH: snappyHexMeshDict: added missing documentation 2021-08-02 14:01:12 +01:00
f75379633c CONFIG: Updated version to com following release of OpenFOAM v2106 2021-06-28 17:33:22 +01:00
c15bfde3cb RELEASE: Updated config scripts to v2106 2021-06-28 09:15:09 +01:00
e3796745ed CONFIG: Updated headers to v2106
Minor clean-up
2021-06-28 09:14:42 +01:00
c503deb72e CONFIG: Updated completions 2021-06-28 09:14:34 +01:00
e2148b587e CONFIG: inline _foamEval within <etc/config.sh/setup>
- previously a function (unlike the csh version) but since bashrc and
  setup have been split -> replace with inline definition

STYLE: formatting/wording for openfoam starters

TUT: simplify controlDict modification, add default substitution

ENH: accept '/' for end-of-options terminator (etc/openfoam)

- makes the application or service more apparent.
  * eg.  /usr/bin/openfoam / blockMesh
  * vs.  /usr/bin/openfoam -- blockMesh

  Accept lone '-' as the end-of-options terminator, as per bash

- Adjust handling of openfoam '-c' option to flag that a command-string
  will appear, but continue with option parsing.
  Consistent with bash definition.
2021-06-18 17:14:22 +02:00
096b9dc52e TUT: add parallel version for various squareBend cases
- adjust commented-out evaluation to avoid warnings.

  With code like this
  ```
  #if 0
  nxin    #eval{ round($nxin / 5) };
  #endif
  ```

  The handling of the "#if 0 / #endif" clause uses the plain ISstream
  parser to tokenize. This means that the "round(" is parsed as a word
  with a mismatched closing ')', whereas the "#eval" parser will slurp
  everything in until the closing brace and send it off as a string
  to the expression parser.
2021-06-18 17:14:22 +02:00
ea12bfdb0f ENH: new multiFieldValue function object
Computes a selected operation between multiple \c fieldValue function
    objects.

    The operation is applied to all results of each \c fieldValue object.

Note
    Each object must generate the same number and type of results.

Usage
    Minimal example by using \c system/controlDict.functions:

    multiFieldValue1
    {
        // Mandatory entries (unmodifiable)
        type            multiFieldValue;
        libs            (fieldFunctionObjects);

        // Mandatory entries (runtime modifiable)
        operation       subtract;

        // List of fieldValue function objects as dictionaries
        functions
        {
            region1
            {
                ...
            }
            region2
            {
                ...
            }

            ...

            regionN
            {
                ...
            }
        }

        // Optional (inherited) entries
        ...
    }

    where the entries mean:

      Property     | Description                         | Type | Req'd | Dflt
      type         | Type name: multiFieldValue          | word |  yes  | -
      libs         | Library name: fieldFunctionObjects  | word |  yes  | -
      operation    | Operation type to apply to values   | word |  yes  | -
      functions    | List of fieldValue function objects | dict |  yes  | -
    \endtable

    Options for the \c operation entry:

       add           | add
       subtract      | subtract
       min           | minimum
       max           | maximum
       average       | average

Deprecated fieldValueDelta

- The fieldValueDelta function object was originally written to compute the
difference between two fieldValue-type function objects. The multiFieldValue
object name better describes its purpose whilst being able to operate on an
arbitrary number of fieldValue-type objects.
2021-06-16 11:19:44 +02:00
b6e8768034 CONFIG: update compiler versions
TUT: add missing restore0Dir (finiteArea)

STYLE: doc spelling
2021-06-14 19:20:15 +02:00
30da494e55 STYLE: PatchParticleHistogram: simplify output for further parsing
CONFIG: update completion_cache
2021-06-11 17:18:36 +02:00
853010309d ENH: replace tutorials/AutoTest with bin/foamTestTutorial
- additional -serial/-parallel option:
  prefer Allrun-serial or Allrun-parallel if available

- optional -output=DIR to preserve output

ENH: report missing tutorials/ directory in RunFunctions
2021-06-10 08:38:20 +02:00
b59ae32d68 ENH: provide dictionary access for coded BCs etc (#1922)
- in some cases, additional dictionary inputs are useful for extending
  the input parameters or functionality of dynamic coded conditions.

  Typically this can be used to provide a simple set of dictionary
  inputs that are used to drive specific code, but allows changing the
  inputs without causing a recompilation.

  Accessed with this type of code:
  ```
  const dictionary& dict = this->codeContext();
  ```

boundary conditions and function objects:

* specify an additional codeContext dictionary entry:
  ```
  codeContext
  {
      ...
  }
  ```

PatchFunction1:

* The code context dictionary is simply the dictionary used to specify
  the PatchFunction1 coefficients.

  To replicated persistant data, use local member static data.
  Eg,
  ```
  code
  #{
      // Persistent (Member) Data
      static autoPtr<Function1<scalar>> baseVel;
      static autoPtr<Function1<vector>> baseDir;
      ...
  #}
  ```

fvOptions:

* currently not applicable
2021-06-07 10:28:15 +02:00
b0891824fa ENH: improve codeTemplates
- meshTools include/library for many (most) coded items

- add PatchFunction1 include for coded BCs to provide ready access
  to Function1 and PatchFunction1
2021-06-07 09:48:21 +02:00
b2ab5e8ae9 CONFIG: update scotch (6.1.0), paraview (5.9.1) and petsc (3.15.0) 2021-05-19 18:16:06 +02:00
3a1a160cbb ENH: refactor and extend handling of faSchemes/fvSchemes
- use common base for handling scheme lookups.
  Extended to support local injection of schemes into the dictionaries
  during runtime.
2021-05-13 15:27:24 +02:00