Commit Graph

156 Commits

Author SHA1 Message Date
c0f44ac4f3 MRG: Integrated foundation code 2016-12-12 12:10:29 +00:00
6a26ac850b POSIX: removed spurious double literal suffix 2016-11-25 22:40:49 +00:00
bf326cc4f7 fileModification: time checking now with nano-second precision
fileModificationSkew: now a floating-point number to support sub-second
specification.

Patch contributed by Mattijs Janssens
2016-11-25 15:36:10 +00:00
80db302666 Allwmake: Remove 'set -x' which generates a lot of noise
'set -x' should be used for debugging.

Added command printing into wmake and Allwmake as a replacement for
'set -x' to log current target.
2016-11-13 18:08:22 +00:00
2c06a905ab Cleanup endian support (closes #271)
- Place common code under OSspecific.

By including "endian.H", either one of WM_BIG_ENDIAN or WM_LITTLE_ENDIAN
will be defined.

Provides inline 32-bit and 64-bit byte swap routines that can be
used/re-used elsewhere.

The inplace memory swaps currently used by the VTK output are left for
the moment pending further cleanup of that code.
2016-10-17 12:02:01 +02:00
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
1d308b2ead Update header 2016-08-17 23:03:49 +01:00
a9280d103f sigWriteNow, sigStopAtWriteNow: Change runTimePtr_ to static member 2016-08-17 23:02:58 +01:00
c5630e5cb1 Corrected nullptr collateral damage
Resolves bug-report http://bugs.openfoam.org/view.php?id=2181
2016-08-08 15:38:53 +01:00
58f905ff70 C++11: Replaced the C NULL with the safer C++11 nullptr
Requires gcc version 4.7 or higher
2016-08-05 17:19:38 +01:00
e2935fa680 Merge branch 'fix-systemcall' into 'develop'
replace system() call with vfork/exec combination (issue #185)

Tested systemCall function object, dynamicCode, but should be rechecked with IB+openmpi
@Prashant

See merge request !55
2016-07-26 15:26:00 +01:00
8bb78dda60 ENH: provide a vfork/exec version of system (issue #185)
The normal library system() command uses 'fork', which causes
problems on IB+OPENMPI.

STYLE: add Foam:: qualifier to system calls to make them easier to spot.
2016-07-18 13:37:39 +02:00
6a53ed41ba Doxygen documentation: Standardized the 'See also' heading 2016-06-17 17:31:34 +01:00
1319df48d9 Rationalized Doxygen documentation of command-line options 2016-06-17 09:11:58 +01:00
c7b27f5af9 ENH: provide basic cpu-information
- can be useful later when trying to interpret run-times etc.

  Contains only the most basic information.
2016-06-15 12:38:46 +02:00
e2d01c02e3 GIT: remove stray (unused) memInfoIO.C file 2016-06-15 11:29:11 +02:00
a4f8f589de Added forward declaration of friend functions 2016-05-29 22:28:37 +01:00
e4dc50dcb0 postProcessing: Replaced 'foamCalc' and the 'postCalc' utilities
with the more general and flexible 'postProcess' utility and '-postProcess' solver option

Rationale
---------

Both the 'postProcess' utility and '-postProcess' solver option use the
same extensive set of functionObjects available for data-processing
during the run avoiding the substantial code duplication necessary for
the 'foamCalc' and 'postCalc' utilities and simplifying maintenance.
Additionally consistency is guaranteed between solver data processing
and post-processing.

The functionObjects have been substantially re-written and generalized
to simplify development and encourage contribution.

Configuration
-------------

An extensive set of simple functionObject configuration files are
provided in

OpenFOAM-dev/etc/caseDicts/postProcessing

and more will be added in the future.  These can either be copied into
'<case>/system' directory and included into the 'controlDict.functions'
sub-dictionary or included directly from 'etc/caseDicts/postProcessing'
using the '#includeEtc' directive or the new and more convenient
'#includeFunc' directive which searches the
'<etc>/caseDicts/postProcessing' directories for the selected
functionObject, e.g.

functions
{
    #includeFunc Q
    #includeFunc Lambda2
}

'#includeFunc' first searches the '<case>/system' directory in case
there is a local configuration.

Description of #includeFunc
---------------------------

    Specify a functionObject dictionary file to include, expects the
    functionObject name to follow (without quotes).

    Search for functionObject dictionary file in
    user/group/shipped directories.
    The search scheme allows for version-specific and
    version-independent files using the following hierarchy:
    - \b user settings:
      - ~/.OpenFOAM/\<VERSION\>/caseDicts/postProcessing
      - ~/.OpenFOAM/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is set):
      - $WM_PROJECT_SITE/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_SITE/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is not set):
      - $WM_PROJECT_INST_DIR/site/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_INST_DIR/site/caseDicts/postProcessing
    - \b other (shipped) settings:
      - $WM_PROJECT_DIR/etc/caseDicts/postProcessing

    An example of the \c \#includeFunc directive:
    \verbatim
        #includeFunc <funcName>
    \endverbatim

postProcess
-----------

The 'postProcess' utility and '-postProcess' solver option provide the
same set of controls to execute functionObjects after the run either by
reading a specified set of fields to process in the case of
'postProcess' or by reading all fields and models required to start the
run in the case of '-postProcess' for each selected time:

postProcess -help

Usage: postProcess [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

 pimpleFoam -postProcess -help

Usage: pimpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

The functionObjects to execute may be specified on the command-line
using the '-func' option for a single functionObject or '-funcs' for a
list, e.g.

postProcess -func Q
postProcess -funcs '(div(U) div(phi))'

In the case of 'Q' the default field to process is 'U' which is
specified in and read from the configuration file but this may be
overridden thus:

postProcess -func 'Q(Ua)'

as is done in the example above to calculate the two forms of the divergence of
the velocity field.  Additional fields which the functionObjects may depend on
can be specified using the '-field' or '-fields' options.

The 'postProcess' utility can only be used to execute functionObjects which
process fields present in the time directories.  However, functionObjects which
depend on fields obtained from models, e.g. properties derived from turbulence
models can be executed using the '-postProcess' of the appropriate solver, e.g.

pisoFoam -postProcess -func PecletNo

or

sonicFoam -postProcess -func MachNo

In this case all required fields will have already been read so the '-field' or
'-fields' options are not be needed.

Henry G. Weller
CFD Direct Ltd.
2016-05-28 18:58:48 +01:00
6f9573bb12 etcFiles: Added functions to find directories in the 'etc' directories
'findEtcFiles' moved from OSspecific to 'etcFiles' as it is not OS-specific
2016-05-28 18:55:37 +01:00
fd9d801e2d GIT: Initial commit after latest foundation merge 2016-04-25 11:40:48 +01:00
7ba41e0095 Removed duplicate, inconsistent and spurious comments in .C files 2016-02-29 18:33:54 +00:00
95d146ecdf Rationalized the indentation of C-preprocessor directives 2016-02-29 15:42:03 +00:00
350d03246e scripts: Reformat with consistent section separators 2016-02-15 18:30:24 +00:00
5728c1f173 Info -> InfoInFunction 2016-01-19 21:58:11 +00:00
a55d5a9b55 OSspecific/POSIX: Dynamically resize the path buffer in cwd
Starting from an initial buffer size of 256 it is incremented in steps
of 256 upto the maximum of 4096 as required.
Based on patch provided by Bruno Santos
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1944
2015-12-13 18:33:01 +00:00
edec4d139d STYLE: sigFpe: use of FatalErrorInFunction 2015-12-11 15:14:45 +00:00
3f55f752fc GIT: Resolve conflict with upstream merge from Foundation 2015-12-07 17:07:20 +00:00
633e2b1255 Minor updates to aid porting to FreeBSD
Based on patches provided by Jason Bacon
2015-12-02 18:18:06 +00:00
99bdd2c1d7 ENH: signals: refactored to make static methods
The signal handling can now be set and unset. This latter is important
for external libraries (e.g. VTK/OpenGL) that do not work with it.
2015-11-27 12:14:14 +00:00
c4d5f65a10 Completed update ...ErrorIn -> ...ErrorInFunction
Avoids the clutter and maintenance effort associated with providing the
function signature string.
2015-11-11 09:03:39 +00:00
00279d617a sigFpe: Replace the deprecated __malloc_hook with a special malloc
This malloc overrides the one provided by GLIBC and calls mallocNan
which initializes the allocated block of memory to NaN if enabled by the
FOAM_SETNAN environment variable.
2015-07-19 12:39:44 +01:00
94401af010 Resolved issues with virtual function inheritance and warning from clang
Also removed __GNUC__ conditional compilation statements which are no
longer needed.
2015-07-17 12:11:37 +01:00
5892c58b04 printStack: rewritten to utilize dladdr for resolution of the stack addresses
Patch provided by Alexey Matveichev
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1676
2015-05-19 08:41:59 +01:00
7dbf92450e printStack, ptscotchDecomp: Correct integer type used to hold memory addresses 2015-05-14 18:48:35 +01:00
8628ef2fea Corrected capitalization of Doxygen documentation comments 2015-02-14 13:10:15 +00:00
66cb99e696 Updated headers to ensure the class name declared to Doxygen is in the appropriate namespace
Also moved global classes which should be in the Foam namespace into it.
2015-02-09 14:43:11 +00:00
f6421f108d POSIX.C findEtcFiles: Revert change to read system/controlDict
Causes problems if the controlDict contains # entries
2015-02-03 11:59:43 +00:00
173004a87a Updated header 2015-02-01 12:38:12 +00:00
4022238dec POSIX/debug: Add ./system on the list of etc directories
in particular to pick-up the DebugSwitches from system/controlDict at
global construction time.

Disadvantage is that system/controlDict is only picked-up if the
OpenFOAM application is executed IN the case directory.  The directory
provided by the -case option is not yet known as the arguments have not
yet been parsed.
2015-02-01 12:34:19 +00:00
33b1bf4c87 regExp: Add support for case-insensitive patterns
From https://github.com/OpenFOAM/OpenFOAM-2.2.x/pull/1
2015-01-28 16:35:36 +00:00
c93f87cc7f Added support for glibc < 2.18
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1474
2015-01-04 20:13:37 +00:00
ded2f25726 Updated headers 2014-12-31 19:08:15 +00:00
325b003b6e Added and verified support for 64bit labels
To compile with 64bit labels set

WM_LABEL_SIZE=64

in ~/OpenFOAM/dev/prefs.sh

source ~/.bashrc

then Allwmake in OpenFOAM-dev.

This will build into for example OpenFOAM-dev/platforms/linux64ClangDPInt64Opt

If WM_LABEL_SIZE is unset or set to 32:

WM_LABEL_SIZE=32

the build would be placed into OpenFOAM-dev/platforms/linux64ClangDPInt32Opt

Thus both 32bit and 64bit label builds can coexist without problem.
2014-12-31 19:02:52 +00:00
844b283030 New version of wmake supporting out-of-tree object and dependency files 2014-12-14 21:42:18 +00:00
2e99db9c22 ENH: OSspecific - softlink handling (fixes #164)
Links are followed in most cases, with some notable exceptions:

- mv, mvBak:
  renames the link, not the underlying file/directory

- rmDir:
  remove the symlink to a directory, does not recurse into the
  underlying directory
2014-04-23 15:00:00 +02:00
ed99c9d05d ENH: sigFpe: use std::signalling_nan 2013-10-31 12:57:01 +00:00
33e8d6f456 STYLE: fileMonitor: initialise variable 2013-10-14 11:56:49 +01:00
a501d0ff3c ENH: sigFpe: split off Nan handling 2013-09-18 16:59:44 +01:00
c2e3902e7a ENH: printStack: offsets are size_t 2013-07-10 12:36:23 +01:00
15c433b337 ENH: wmake: 'wmake dep' to build dependencies and softlinks 2013-06-04 16:50:33 +01:00