Commit Graph

628 Commits

Author SHA1 Message Date
67de20df25 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
ce0cd35185 Patches contributed by Mattijs Janssens:
splitMeshRegions: handle flipping of faces for surface fields

subsetMesh: subset dimensionedFields

decomposePar: use run-time selection of decomposition constraints. Used to
    keep cells on particular processors. See the decomposeParDict in

$FOAM_UTILITIES/parallel/decomposePar:
  - preserveBaffles: keep baffle faces on same processor
  - preserveFaceZones: keep faceZones owner and neighbour on same processor
  - preservePatches: keep owner and neighbour on same processor. Note: not
    suitable for cyclicAMI since these are not coupled on the patch level
  - singleProcessorFaceSets: keep complete faceSet on a single processor
  - refinementHistory: keep cells originating from a single cell on the
    same processor.

decomposePar: clean up decomposition of refinement data from snappyHexMesh

reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)

reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)

redistributePar:
  - corrected mapping surfaceFields
  - adding processor patches in order consistent with decomposePar

argList: check that slaves are running same version as master

fvMeshSubset: move to dynamicMesh library

fvMeshDistribute:
  - support for mapping dimensionedFields
  - corrected mapping of surfaceFields

parallel routines: allow parallel running on single processor

Field: support for
  - distributed mapping
  - mapping with flipping

mapDistribute: support for flipping

AMIInterpolation: avoid constructing localPoints
2016-05-15 16:36:48 +01:00
bd52e35f77 checkMesh: Updated the closed-ness test for ACMI to use FV
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2088
2016-05-13 16:23:02 +01:00
637ee8830f processorPolyPatch: Avoid nesting loops with the same index 2016-05-05 15:17:08 +01:00
9ce96f3c48 globalMeshData: Handle cyclic baffles in coupled edge synchronisation
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=2080
Patch contributed by Mattijs Janssens

Conflicts:
	src/OpenFOAM/meshes/polyMesh/globalMeshData/globalMeshData.C
2016-05-03 15:49:52 +01:00
f7f1eea359 globalMeshData: Handle cyclic baffles in coupled edge synchronisation
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=2080
Patch contributed by Mattijs Janssens
2016-05-03 15:49:52 +01:00
450728ea84 Standardized cell, patch, face and processor loop index names 2016-04-25 12:00:53 +01:00
43beb06018 Standardized cell, patch and face loop index names 2016-04-25 10:28:32 +01:00
683cfb9d97 vector::zero -> Zero 2016-04-15 11:32:42 +01:00
69fde6b831 ENH: provide Ostream virtual methods beginBlock, endBlock (fixes #112)
- eases creation of dictionary-like output.

- make keyWord() method virtual to allow adaptation for alternative
  outputs
2016-04-15 11:04:13 +02:00
b9313ef2fe ENH: Consistency updates after Foundation merge and code tidying 2016-04-25 16:46:56 +01:00
fd9d801e2d GIT: Initial commit after latest foundation merge 2016-04-25 11:40:48 +01:00
6e573ad7e8 UList: Rationalize assignment (shallow-copy vs deep-copy)
//- Disallow default shallow-copy assignment
    //
    //  Assignment of UList<T> may need to be either shallow (copy pointer)
    //  or deep (copy elements) depending on context or the particular type
    //  of list derived from UList and it is confusing and prone to error
    //  for the default assignment to be either.  The solution is to
    //  disallow default assignment and provide separate 'shallowCopy' and
    //  'deepCopy' member functions.
    void operator=(const UList<T>&) = delete;

    //- Copy the pointer held by the given UList.
    inline void shallowCopy(const UList<T>&);

    //- Copy elements of the given UList.
    void deepCopy(const UList<T>&);
2016-04-03 10:26:05 +01:00
88bd912374 Pstream: optimisation of data exchange
Contributed by Mattijs Janssens.

1. Any non-blocking data exchange needs to know in advance the sizes to
   receive so it can size the buffer.  For "halo" exchanges this is not
   a problem since the sizes are known in advance but or all other data
   exchanges these sizes need to be exchanged in advance.

   This was previously done by having all processors send the sizes of data to
   send to the master and send it back such that all processors
   - had the same information
   - all could work out who was sending what to where and hence what needed to
     be received.

   This is now changed such that we only send the size to the
   destination processor (instead of to all as previously). This means
   that
   - the list of sizes to send is now of size nProcs v.s. nProcs*nProcs before
   - we cut out the route to the master and back by using a native MPI
     call

   It causes a small change to the API of exchange and PstreamBuffers -
   they now return the sizes of the local buffers only (a labelList) and
   not the sizes of the buffers on all processors (labelListList)

2. Reversing the order of the way in which the sending is done when
   scattering information from the master processor to the other
   processors. This is done in a tree like fashion. Each processor has a
   set of processors to receive from/ send to. When receiving it will
   first receive from the processors with the least amount of
   sub-processors (i.e. the ones which return first). When sending it
   needs to do the opposite: start sending to the processor with the
   most amount of sub-tree since this is the critical path.
2016-04-02 18:32:11 +01:00
493d9c8c95 ENH: genericPolyPatch: filter out duplicates when writing 2016-03-21 12:30:34 +00:00
3963149c05 src/OpenFOAM: Moved function documentation comments into .H files and removed duplicates 2016-02-29 21:21:41 +00:00
7ba41e0095 Removed duplicate, inconsistent and spurious comments in .C files 2016-02-29 18:33:54 +00:00
95d146ecdf Rationalized the indentation of C-preprocessor directives 2016-02-29 15:42:03 +00:00
dac76d680c tmp: encapsulate refCount to enable the option for tmp to use a specific version 2016-02-28 22:50:24 +00:00
15b7e87da7 tmp: Updated to store and preserve the const-ness of the reference to a constant object
This change requires that the de-reference operator '()' returns a
const-reference to the object stored irrespective of the const-ness of
object stored and the new member function 'ref()' is provided to return
an non-const reference to stored object which throws a fatal error if the
stored object is const.

In order to smooth the transition to this new safer 'tmp' the now
deprecated and unsafe non-const de-reference operator '()' is still
provided by default but may be switched-off with the compilation switch
'CONST_TMP'.

The main OpenFOAM library has already been upgraded and '-DCONST_TMP'
option specified in the 'options' file to switch to the new 'tmp'
behavior.  The rest of OpenFOAM-dev will be upgraded over the following
few weeks.

Henry G. Weller
CFD Direct
2016-02-22 16:23:21 +00:00
99a10ecea6 Boundary conditions: Added extrapolatedCalculatedFvPatchField
To be used instead of zeroGradientFvPatchField for temporary fields for
which zero-gradient extrapolation is use to evaluate the boundary field
but avoiding fields derived from temporary field using field algebra
inheriting the zeroGradient boundary condition by the reuse of the
temporary field storage.

zeroGradientFvPatchField should not be used as the default patch field
for any temporary fields and should be avoided for non-temporary fields
except where it is clearly appropriate;
extrapolatedCalculatedFvPatchField and calculatedFvPatchField are
generally more suitable defaults depending on the manner in which the
boundary values are specified or evaluated.

The entire OpenFOAM-dev code-base has been updated following the above
recommendations.

Henry G. Weller
CFD Direct
2016-02-20 22:44:37 +00:00
8b9698ad43 processorPolyPatch, processorCyclicPolyPatch: Rationalized the construction of the patch name
This change ensures that these patches are named consistently so that
they can be looked-up as required in e.g. patchMeanVelocityForce
2016-02-02 20:07:16 +00:00
9e3ce4ec7f Merge branch 'master' of develop.openfoam.com:Development/OpenFOAM-plus into feature-shared-file
Conflicts:
	applications/utilities/mesh/advanced/refinementLevel/refinementLevel.C
	applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C
	applications/utilities/miscellaneous/foamHelp/helpTypes/helpBoundary/helpBoundary.C
	applications/utilities/postProcessing/graphics/PV3Readers/PV3FoamReader/vtkPV3Foam/vtkPV3FoamUpdateInfo.C
	applications/utilities/postProcessing/graphics/PV4Readers/PV4FoamReader/vtkPV4Foam/vtkPV4FoamUpdateInfo.C
	applications/utilities/postProcessing/turbulence/createTurbulenceFields/createTurbulenceFields.C
	applications/utilities/postProcessing/velocityField/Co/Co.C
	applications/utilities/postProcessing/velocityField/Pe/Pe.C
	applications/utilities/preProcessing/applyBoundaryLayer/applyBoundaryLayer.C
	applications/utilities/preProcessing/changeDictionary/changeDictionary.C
	applications/utilities/preProcessing/setFields/setFields.C
	applications/utilities/surface/surfaceMeshConvert/surfaceMeshConvert.C
	applications/utilities/surface/surfaceMeshExport/surfaceMeshExport.C
	applications/utilities/surface/surfaceMeshImport/surfaceMeshImport.C
	applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C
	src/OpenFOAM/db/IOobject/IOobject.C
	src/OpenFOAM/db/IOobjects/CompactIOList/CompactIOList.C
	src/OpenFOAM/db/IOobjects/IOField/IOField.C
	src/OpenFOAM/db/IOobjects/IOList/IOList.C
	src/OpenFOAM/db/IOobjects/IOPtrList/IOPtrList.C
	src/OpenFOAM/db/IOobjects/IOdictionary/IOdictionary.C
	src/OpenFOAM/db/Time/findInstance.C
	src/OpenFOAM/db/regIOobject/regIOobject.C
	src/OpenFOAM/db/regIOobject/regIOobjectI.H
	src/OpenFOAM/db/regIOobject/regIOobjectRead.C
	src/OpenFOAM/db/regIOobject/regIOobjectWrite.C
	src/OpenFOAM/meshes/polyMesh/mapPolyMesh/mapDistribute/IOmapDistribute.C
	src/OpenFOAM/meshes/polyMesh/polyBoundaryMesh/polyBoundaryMesh.C
	src/OpenFOAM/meshes/polyMesh/zones/ZoneMesh/ZoneMesh.C
	src/dynamicMesh/fvMeshDistribute/IOmapDistributePolyMesh.C
	src/dynamicMesh/motionSolver/componentDisplacement/componentDisplacementMotionSolver.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/hexRef8Data.C
	src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8/refinementHistory.C
	src/dynamicMesh/polyTopoChange/polyTopoChanger/polyTopoChanger.C
	src/edgeMesh/edgeMeshFormats/edgeMesh/edgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedEdgeMeshFormats/extendedEdgeMeshFormat/extendedEdgeMeshFormat.C
	src/edgeMesh/extendedEdgeMesh/extendedFeatureEdgeMesh/extendedFeatureEdgeMesh.C
	src/fvMotionSolver/fvMotionSolvers/displacement/interpolation/displacementInterpolationMotionSolver.C
	src/fvMotionSolver/pointPatchFields/derived/uniformInterpolatedDisplacement/uniformInterpolatedDisplacementPointPatchVectorField.C
	src/lagrangian/basic/Cloud/CloudIO.C
	src/meshTools/sets/cellSources/fieldToCell/fieldToCell.C
	src/postProcessing/foamCalcFunctions/basic/addSubtract/addSubtract.C
	src/postProcessing/functionObjects/field/fieldCoordinateSystemTransform/fieldCoordinateSystemTransformTemplates.C
	src/postProcessing/functionObjects/field/readFields/readFieldsTemplates.C
	src/thermophysicalModels/radiation/radiationModels/fvDOM/radiativeIntensityRay/radiativeIntensityRay.C
	src/triSurface/triSurface/surfacePatch/surfacePatchIOList.C
2016-01-25 16:29:04 +00:00
e424059208 ENH: glboal file handling: initial commit
Moved file path handling to regIOobject and made it type specific so
now every object can have its own rules. Examples:
- faceZones are now processor local (and don't search up anymore)
- timeStampMaster is now no longer hardcoded inside IOdictionary
  (e.g. uniformDimensionedFields support it as well)
- the distributedTriSurfaceMesh is properly processor-local; no need
  for fileModificationChecking manipulation.
2016-01-25 13:03:15 +00:00
aa38e25c92 Info -> InfoInFunction and updated comments 2016-01-20 17:51:15 +00:00
68e86f97fe Info -> InfoInFunction and updated comments 2016-01-20 10:18:13 +00:00
56fa7c0906 Update code to use the simpler C++11 template syntax removing spaces between closing ">"s 2016-01-10 22:41:16 +00:00
9439d83f39 Make private member functions private
Resolves bug-report http://openfoam.org/mantisbt/view.php?id=1969
2016-01-10 12:49:35 +00:00
75cf86b769 Correct formatting: "forAll (" -> "forAll("
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1967
2016-01-09 23:10:16 +00:00
8864223aed ENH: copyright: make consistent with OpenFOAM-history 2015-12-19 14:22:30 +00:00
4fef499298 BUG: polyMesh: test for up-to-date data w.r.t. points 2015-12-09 17:03:15 +00:00
8400a1c19f ENH: Updated notImplemented(...)->NotImplemented messages 2015-12-08 22:56:15 +00:00
eafd5a3850 ENH: Updated Info, Warning and Error messages 2015-12-08 11:15:39 +00:00
3f55f752fc GIT: Resolve conflict with upstream merge from Foundation 2015-12-07 17:07:20 +00:00
916dcb8685 ENH: parallel: overhaul of parallel mapping
- redistributePar to have almost (complete) functionality of decomposePar+reconstructPar
- low-level distributed Field mapping
- support for mapping surfaceFields (including flipping faces)
- support for decomposing/reconstructing refinement data
2015-11-17 15:05:05 +00:00
1afb36a476 BUG: polyMesh: update patchGroups when polyMesh::readUpdate 2015-11-11 13:28:41 +00:00
cc3ef7b876 STYLE: cyclicPolyPatch: unused include files 2015-11-11 13:26:09 +00:00
18b42907af STYLE: processorPolyPatch: typo in comment 2015-11-11 13:25:37 +00:00
c48a203267 BUG: procesorPolyPatch: fixed check on oppositeness, correct tolerance 2015-11-11 12:54:08 +00:00
3457f567e5 ENH: uniformFixedValue: typo in comment 2015-11-11 12:52:51 +00:00
dc43311e62 src/OpenFOAM: Update ...IOErrorIn -> ...IOErrorInFunction
Avoids the clutter and maintenance effort associated with providing the
function signature string.
2015-11-10 21:13:04 +00:00
a4ab3f61db src/OpenFOAM: Update ...ErrorIn -> ...ErrorInFunction
Avoids the clutter and maintenance effort associated with providing the
function signature string.
2015-11-08 12:23:52 +00:00
d0a00a6b27 Merge branch 'develop' into feature-snappyHexMesh 2015-11-03 12:37:05 +00:00
865af48969 BUG: globalMeshData() : trigger of globalMeshData inside e.g. deltaCoeffs
Original fix (http://www.openfoam.org/mantisbt/view.php?id=1780)
did an increment to create a new communicator. This might
access the communicator-to-mpi_structure tables in PstreamGlobals.H outside
range. Instead allocate and release communicator.
2015-11-03 10:04:08 +00:00
42fb1b9e8e Updated notImplemented -> NotImplemented
The new NotImplemented macro uses __PRETTY_FUNCTION__ for GNU compatible
compilers otherwise __func__ to provide the function name string.
2015-11-01 10:26:37 +00:00
d95fc106b6 polyMesh: Ensure parallel consistency in findCell
by ensuring tetBasePtIs is called on all processors, even for those with
0 cells.  Also use unique communicator for globalMeshData to avoid data
transfer interference.

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1792
2015-10-21 12:47:02 +01:00
766142b4cc polyMesh: Correct CELL_TETS mode in findCell
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1792
2015-10-19 16:59:19 +01:00
4e9bfba3f9 ENH: syncTools: have local synchronisation (e.g. cyclics) only 2015-10-13 16:06:56 +01:00
bb0898d2e0 globalMeshData: Changed the communicator for the reductions
Avoids problems with overlapping communicationbetween these reductions
and the calculation of deltaCoeffs.  This is a temporary fix while code
reorganizations are undertaken to ensure the globalMeshData is updated
before deltaCoeffs are requested.

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1780
2015-09-13 22:21:53 +01:00
0ebd122b0a polyMeshFromShapeMesh: Set patch-face to corresponding cell-face
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1818
2015-08-08 14:30:06 +01:00